Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g019520 Solanum pennellii HOM05D006283 ORTHO05D007727 1.1e-184 649.8 314 100.0
Solyc06g054450.3 Solanum lycopersicum HOM05D006283 ORTHO05D007727 2.0e-159 565.8 274 98.9
CAN.G1247.5 Capsicum annuum HOM05D006283 ORTHO05D007727 1.1e-138 496.9 273 86.1
Peaxi162Scf00126g00015 Petunia axillaris HOM05D006283 ORTHO05D007727 1.2e-132 476.9 266 82.7
PGSC0003DMG400030791 Solanum tuberosum HOM05D006283 ORTHO05D007727 7.0e-128 461.1 223 96.4
Nitab4.5_0000130g0340 Nicotiana tabacum HOM05D006283 ORTHO05D007727 5.9e-127 458.0 257 83.7
Dinv22729 Davidia involucrata HOM05D006283 ORTHO05D007727 3.2e-117 425.6 261 74.7
Cc03_g13090 Coffea canephora HOM05D006283 ORTHO05D007727 1.2e-116 423.7 261 73.6
TAR362G0864 Trochodendron aralioides HOM05D006283 ORTHO05D007727 3.0e-115 419.1 261 72.8
SalBow3G2028 Salvia bowleyana HOM05D006283 ORTHO05D007727 1.5e-114 416.8 261 72.4
GSVIVG01010753001 Vitis vinifera HOM05D006283 ORTHO05D007727 4.4e-114 415.2 273 70.7
Hma1.2p1_0847F.1_g227833 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 1.3e-113 413.7 247 75.3
Eucgr.H00372 Eucalyptus grandis HOM05D006283 ORTHO05D007727 2.8e-113 412.5 263 72.2
DCAR_029916 Daucus carota HOM05D006283 ORTHO05D007727 1.1e-112 410.6 271 66.8
Migut.N02075 Erythranthe guttata HOM05D006283 ORTHO05D007727 5.4e-112 408.3 262 71.0
Ciclev10021635m.g Citrus clementina HOM05D006283 ORTHO05D007727 1.6e-111 406.8 262 71.8
Actinidia35975 Actinidia chinensis HOM05D006283 ORTHO05D007727 2.7e-111 406.0 261 71.3
CiPaw.02G054900 Carya illinoinensis HOM05D006283 ORTHO05D007727 4.5e-111 405.2 261 69.7
HanXRQChr16g0525531 Helianthus annuus HOM05D006283 ORTHO05D007727 4.5e-111 405.2 266 69.9
Atru.chr3.1494 Acer truncatum HOM05D006283 ORTHO05D007727 7.7e-111 404.4 282 66.3
Lsat_1_v5_gn_4_30241 Lactuca sativa HOM05D006283 ORTHO05D007727 1.0e-110 404.1 273 67.8
MSTRG.9766 Avicennia marina HOM05D006283 ORTHO05D007727 1.3e-110 403.7 261 70.1
Manes.11G120300 Manihot esculenta HOM05D006283 ORTHO05D007727 1.7e-110 403.3 261 69.0
Potri.019G051300 Populus trichocarpa HOM05D006283 ORTHO05D007727 2.5e-109 399.4 268 69.0
CsaV3_4G003450 Cucumis sativus L. HOM05D006283 ORTHO05D007727 7.2e-109 397.9 265 68.7
Rhsim09G0027900 Rhododendron simsii HOM05D006283 ORTHO05D007727 7.2e-109 397.9 279 65.9
Actinidia34602 Actinidia chinensis HOM05D006283 ORTHO05D007727 9.4e-109 397.5 261 70.1
MELO3C017715.2 Cucumis melo HOM05D006283 ORTHO05D007727 2.1e-108 396.4 265 68.7
Prupe.1G192800 Prunus persica HOM05D006283 ORTHO05D007727 3.6e-108 395.6 274 66.1
Nn1g09881 Nelumbo nucifera HOM05D006283 ORTHO05D007727 6.1e-108 394.8 272 68.4
THA.LOC104803704 Tarenaya hassleriana HOM05D006283 ORTHO05D007727 8.0e-108 394.4 269 68.4
PGR142G0689 Punica granatum HOM05D006283 ORTHO05D007727 1.4e-107 393.7 262 69.8
Gohir.D10G129700 Gossypium hirsutum HOM05D006283 ORTHO05D007727 1.8e-107 393.3 270 66.7
Gorai.011G143000 Gossypium raimondii HOM05D006283 ORTHO05D007727 1.8e-107 393.3 270 66.7
TWI15G0224 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 3.0e-107 392.5 265 66.4
TWI15G1054 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 3.0e-107 392.5 265 66.4
Thecc.04G180000 Theobroma cacao HOM05D006283 ORTHO05D007727 2.0e-106 389.8 278 64.4
Aqoxy2G04092 Aquilegia oxysepala HOM05D006283 ORTHO05D007727 2.6e-106 389.4 262 66.4
Lj3g0020373 Lotus japonicus HOM05D006283 ORTHO05D007727 2.6e-106 389.4 263 67.7
AL5G41290 Arabidopsis lyrata HOM05D006283 ORTHO05D007727 7.5e-106 387.9 270 66.3
ECA234G3618 Erigeron canadensis HOM05D006283 ORTHO05D007727 7.5e-106 387.9 254 68.5
MD04G1040100 Malus domestica HOM05D006283 ORTHO05D007727 1.3e-105 387.1 280 63.6
FvH4_4g10770 Fragaria vesca HOM05D006283 ORTHO05D007727 1.7e-105 386.7 262 67.2
Gohir.A10G137000 Gossypium hirsutum HOM05D006283 ORTHO05D007727 1.7e-105 386.7 275 63.6
PSO675G6362 Papaver somniferum HOM05D006283 ORTHO05D007727 1.7e-105 386.7 262 66.4
AT3G59390 Arabidopsis thaliana HOM05D006283 ORTHO05D007727 6.3e-105 384.8 276 65.6
Thhalv10006168m.g Eutrema salsugineum HOM05D006283 ORTHO05D007727 6.3e-105 384.8 270 65.9
PSO017G4585 Papaver somniferum HOM05D006283 ORTHO05D007727 8.3e-105 384.4 261 65.9
CARHR169780 Cardamine hirsuta HOM05D006283 ORTHO05D007727 1.1e-104 384.0 270 65.2
Glyma.11G127900 Glycine max HOM05D006283 ORTHO05D007727 1.1e-104 384.0 278 62.6
Carub.0005s2613 Capsella rubella HOM05D006283 ORTHO05D007727 9.1e-104 380.9 276 64.5
RcHm_v2.0_Chr4g0406391 Rosa chinensis HOM05D006283 ORTHO05D007727 9.1e-104 380.9 277 64.3
CANSAT78G1066 Cannabis sativa HOM05D006283 ORTHO05D007727 1.2e-103 380.6 270 64.1
Phvul.011G054600 Phaseolus vulgaris HOM05D006283 ORTHO05D007727 1.2e-103 380.6 262 65.3
Sp5g03750 Schrenkiella parvula HOM05D006283 ORTHO05D007727 2.7e-103 379.4 270 65.6
Sed0010312 Sechium edule HOM05D006283 ORTHO05D007727 3.5e-103 379.0 260 65.8
Ca_20784_v3 Cicer arietinum L. HOM05D006283 ORTHO05D007727 7.7e-103 377.9 264 65.5
TPR.G34200 Trifolium pratense HOM05D006283 ORTHO05D007727 2.3e-102 376.3 274 63.9
C06p26110 Brassica napus HOM05D006283 ORTHO05D007727 2.9e-102 375.9 270 64.1
Oeu034461.3 Olea europaea HOM05D006283 ORTHO05D007727 2.9e-102 375.9 259 66.8
Sed0022341 Sechium edule HOM05D006283 ORTHO05D007727 3.8e-102 375.6 272 66.5
A07p24630 Brassica napus HOM05D006283 ORTHO05D007727 5.0e-102 375.2 270 64.1
BolC6t37776H Brassica oleracea HOM05D006283 ORTHO05D007727 5.0e-102 375.2 270 64.1
VMungo1127G0333 Vigna mungo HOM05D006283 ORTHO05D007727 6.6e-102 374.8 262 63.7
BraA07t30108Z Brassica rapa HOM05D006283 ORTHO05D007727 8.6e-102 374.4 270 64.1
Sc13g0006800 Simmondsia chinensis HOM05D006283 ORTHO05D007727 1.1e-101 374.0 286 59.8
Medtr4g067140 Medicago truncatula HOM05D006283 ORTHO05D007727 3.0e-99 365.9 259 64.1
Aa31LG10G13740 Aethionema arabicum HOM05D006283 ORTHO05D007727 8.9e-99 364.4 265 63.0
Lalb_Chr01g0003171 Lupinus albus HOM05D006283 ORTHO05D007727 3.7e-97 359.0 263 62.4
Lalb_Chr03g0026141 Lupinus albus HOM05D006283 ORTHO05D007727 4.6e-95 352.1 266 61.3
FAN12G2405 Fragaria x ananassa HOM05D006283 ORTHO05D007727 1.8e-91 340.1 255 62.4
EL10Ac3g05930 Beta vulgaris HOM05D006283 ORTHO05D007727 5.2e-91 338.6 244 65.2
Zm00001eb406800 Zea mays HOM05D006283 ORTHO05D007727 2.0e-90 336.7 256 58.6
COL.COLO4_07661 Corchorus olitorius HOM05D006283 ORTHO05D007727 4.4e-90 335.5 251 61.4
Duzib151G0050 Durio zibethinus HOM05D006283 ORTHO05D007727 1.4e-88 330.5 256 60.5
Haze_01514 Corylus avellana HOM05D006283 ORTHO05D007727 2.7e-87 326.2 280 57.1
unitig_747.g21679 Utricularia gibba HOM05D006283 ORTHO05D007727 2.7e-87 326.2 236 59.7
BcaC08g44981 Brassica carinata HOM05D006283 ORTHO05D007727 3.0e-86 322.8 239 62.8
BcaB02g07471 Brassica carinata HOM05D006283 ORTHO05D007727 5.0e-86 322.0 247 61.9
Hund12011 Selenicereus undatus HOM05D006283 ORTHO05D007727 1.9e-85 320.1 203 70.9
CDE08G0087 Ceratophyllum demersum HOM05D006283 ORTHO05D007727 2.5e-85 319.7 231 64.1
arahy.Tifrunner.gnm1.ann1.7GR0QN Arachis hypogaea HOM05D006283 ORTHO05D007727 1.7e-81 307.0 241 58.5
arahy.Tifrunner.gnm1.ann1.9EYB94 Arachis hypogaea HOM05D006283 ORTHO05D007727 2.2e-81 306.6 241 58.5
AUR62015391 Chenopodium quinoa HOM05D006283 ORTHO05D007727 1.9e-80 303.5 195 69.2
SGA_v2.0_scaffold12G06158 Striga asiatica HOM05D006283 ORTHO05D007727 1.7e-78 297.0 300 52.7
HPP92_009172 Vanilla planifolia HOM05D006283 ORTHO05D007727 3.3e-77 292.7 232 57.3
AUR62002299 Chenopodium quinoa HOM05D006283 ORTHO05D007727 5.8e-74 282.0 184 69.6
Pp3c25_2030 Physcomitrium patens HOM05D006283 ORTHO05D007727 7.6e-74 281.6 253 52.2
Duzib268G1109 Durio zibethinus HOM05D006283 ORTHO05D007727 1.3e-73 280.8 177 72.3
SMO119G0098 Selaginella moellendorffii HOM05D006283 ORTHO05D007727 4.1e-72 275.8 241 48.5
Mapoly0093s0081 Marchantia polymorpha HOM05D006283 ORTHO05D007727 2.1e-71 273.5 237 48.5
Glyma.12G052600 Glycine max HOM05D006283 ORTHO05D007727 2.3e-62 243.4 184 60.3
QL10p048744 Quercus lobata HOM05D006283 ORTHO05D007727 3.3e-61 239.6 148 70.9
Lj3A196G22 Lonicera japonica HOM05D006283 ORTHO05D007727 2.4e-59 233.4 138 73.2
Sabra19G0057300 Salix brachista HOM05D006283 ORTHO05D007727 1.5e-53 214.2 152 67.1
SEGI_31631 Sequoiadendron giganteum HOM05D006283 ORTHO05D007727 1.8e-51 207.2 185 53.0
Hma1.2p1_0639F.1_g194055 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 5.3e-51 205.7 132 74.2
Hma1.2p1_0847F.1_g227840 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 5.3e-51 205.7 132 74.2
FAN07G2518 Fragaria x ananassa HOM05D006283 ORTHO05D007727 3.8e-49 199.5 140 65.7
ATR0824G015 Amborella trichopoda HOM05D006283 ORTHO05D007727 1.1e-48 198.0 146 62.3
QL10p048749 Quercus lobata HOM05D006283 ORTHO05D007727 1.1e-43 181.4 116 68.1
FAN12G0556 Fragaria x ananassa HOM05D006283 ORTHO05D007727 1.8e-43 180.6 129 61.2
vmacro00624 Vaccinium macrocarpon HOM05D006283 ORTHO05D007727 1.5e-42 177.6 150 59.3
RcHm_v2.0_Chr4g0406831 Rosa chinensis HOM05D006283 ORTHO05D007727 5.8e-42 175.6 154 55.2
Cre16.g673841 Chlamydomonas reinhardtii HOM05D006283 ORTHO05D007727 2.5e-32 143.7 239 32.6
Peaxi162Scf00126g00003 Petunia axillaris HOM05D006283 ORTHO05D007727 1.2e-31 141.4 111 64.0
Prupe.1G193700 Prunus persica HOM05D006283 ORTHO05D007727 3.7e-28 129.8 106 57.5
ClCG07G015660 Citrullus lanatus HOM05D006283 ORTHO05D007727 6.3e-28 129.0 264 35.6
Lj3A196T13 Lonicera japonica HOM05D006283 ORTHO05D007727 7.9e-23 112.1 95 53.7
Psat7g091240 Pisum sativum HOM05D006283 ORTHO05D007727 1.5e-21 107.8 160 37.5
RcHm_v2.0_Chr4g0406821 Rosa chinensis HOM05D006283 ORTHO05D007727 1.5e-21 107.8 62 72.6
HanXRQChr16g0525261 Helianthus annuus HOM05D006283 ORTHO05D007727 1.2e-18 98.2 68 64.7
vmacro00625 Vaccinium macrocarpon HOM05D006283 ORTHO05D007727 5.0e-17 92.8 44 90.9
Hma1.2p1_0639F.1_g194050 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 1.6e-15 87.8 43 88.4
Hma1.2p1_0847F.1_g227839 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 1.6e-15 87.8 43 88.4
PRCOL_00001858 Prasinoderma coloniale HOM05D006283 ORTHO05D007727 1.1e-13 81.6 146 31.5
Os11g0267100 Oryza sativa ssp. japonica HOM05D006283 ORTHO05D007727 1.3e-09 68.2 77 44.2
CSS0010514 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.7e-09 67.8 38 76.3
CSS0034877 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.7e-09 67.8 38 76.3
C09p49630 Brassica napus HOM05D006283 ORTHO05D007727 8.5e-09 65.5 39 74.4
BolC3t18408H Brassica oleracea HOM05D006283 ORTHO05D007727 8.5e-09 65.5 39 74.4
CSS0022675 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 8.5e-09 65.5 73 46.6
CSS0026672 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 8.5e-09 65.5 73 46.6
Cfa015166 Carpinus fangiana HOM05D006283 ORTHO05D007727 1.1e-08 65.1 43 65.1
MCO13G376 Micromonas commoda HOM05D006283 ORTHO05D007727 3.2e-08 63.5 158 27.8
HanXRQChr12g0365531 Helianthus annuus HOM05D006283 ORTHO05D007727 4.7e-07 59.7 83 43.4
Ah.07g201980 Amaranthus hybridus HOM05D006283 ORTHO05D007727 8.0e-07 58.9 52 51.9


User provided reference genes

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