Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.9e-59 232.3 116 100.0
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 1.9e-59 232.3 116 100.0
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.4e-57 226.1 116 96.6
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 1.9e-38 162.5 111 77.5
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 6.1e-37 157.5 109 77.1
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 8.8e-36 153.7 111 74.8
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 2.0e-35 152.5 110 70.9
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 2.2e-34 149.1 111 65.8
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 3.7e-34 148.3 111 73.0
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 3.1e-33 145.2 110 66.4
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 4.1e-33 144.8 111 64.9
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 1.2e-32 143.3 115 68.7
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 1.9e-30 136.0 112 66.1
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 9.7e-27 123.6 110 60.0
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 1.3e-26 123.2 114 59.6
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 4.8e-26 121.3 107 61.7
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 8.2e-26 120.6 106 60.4
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 1.1e-25 120.2 116 56.9
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 5.3e-25 117.9 110 60.0
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 7.0e-25 117.5 115 55.7
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 9.1e-25 117.1 107 61.7
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 2.6e-24 115.5 105 55.2
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 5.9e-24 114.4 105 58.1
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.3e-23 113.2 105 54.3
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.3e-23 113.2 102 59.8
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.7e-23 112.8 105 62.9
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 5.0e-23 111.3 116 53.4
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 1.6e-21 106.3 107 53.3
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 6.1e-21 104.4 96 58.3
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 1.0e-20 103.6 104 55.8
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.4e-20 103.2 105 56.2
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.8e-20 102.8 110 57.3
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 5.2e-20 101.3 111 53.2
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 5.2e-20 101.3 96 55.2
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 8.8e-20 100.5 107 58.9
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 1.2e-19 100.1 94 54.3
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 2.6e-19 99.0 101 51.5
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 2.6e-19 99.0 100 55.0
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 4.4e-19 98.2 100 60.0
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 5.7e-19 97.8 96 54.2
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 5.7e-19 97.8 93 53.8
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 5.7e-19 97.8 92 53.3
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 7.5e-19 97.4 108 50.9
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 7.5e-19 97.4 96 53.1
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 7.5e-19 97.4 96 53.1
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 9.7e-19 97.1 94 52.1
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 9.7e-19 97.1 108 52.8
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 9.7e-19 97.1 105 53.3
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.3e-18 96.7 102 50.0
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.3e-18 96.7 103 50.5
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 1.7e-18 96.3 114 51.8
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 1.7e-18 96.3 109 54.1
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 1.7e-18 96.3 109 54.1
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.7e-18 96.3 102 50.0
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.2e-18 95.9 111 50.5
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 2.2e-18 95.9 112 54.5
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 2.8e-18 95.5 110 50.9
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.8e-18 95.5 110 51.8
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 4.8e-18 94.7 111 52.3
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 4.8e-18 94.7 110 51.8
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 6.3e-18 94.4 107 51.4
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 6.3e-18 94.4 105 44.8
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 8.3e-18 94.0 112 52.7
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 8.3e-18 94.0 104 49.0
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 8.3e-18 94.0 111 49.5
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 8.3e-18 94.0 96 49.0
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 1.1e-17 93.6 96 54.2
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.8e-17 92.8 104 48.1
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 1.8e-17 92.8 96 52.1
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 4.1e-17 91.7 100 54.0
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 9.1e-17 90.5 106 50.0
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 9.1e-17 90.5 108 49.1
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 1.2e-16 90.1 104 49.0
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 1.2e-16 90.1 105 47.6
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.2e-16 90.1 105 53.3
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 1.6e-16 89.7 90 48.9
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.6e-16 89.7 97 47.4
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.6e-16 89.7 97 47.4
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 1.6e-16 89.7 105 49.5
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 1.6e-16 89.7 88 51.1
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 2.0e-16 89.4 99 51.5
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 2.7e-16 89.0 109 46.8
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.5e-16 88.6 93 50.5
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 4.5e-16 88.2 104 51.0
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 5.9e-16 87.8 91 57.1
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.3e-15 86.7 101 51.5
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 1.7e-15 86.3 91 51.6
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 1.7e-15 86.3 107 47.7
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.2e-15 85.9 103 52.4
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 2.9e-15 85.5 106 50.9
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 5.0e-15 84.7 107 47.7
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 6.5e-15 84.3 110 48.2
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 8.5e-15 84.0 109 46.8
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 1.5e-14 83.2 109 48.6
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.9e-14 82.8 101 51.5
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 2.5e-14 82.4 92 51.1
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.2e-14 82.0 97 45.4
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 3.2e-14 82.0 111 47.7
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 4.2e-14 81.6 116 43.1
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 5.5e-14 81.3 92 48.9
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 7.2e-14 80.9 126 41.3
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 7.2e-14 80.9 126 41.3
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 7.2e-14 80.9 107 46.7
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 9.4e-14 80.5 103 46.6
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 9.4e-14 80.5 111 47.7
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 1.6e-13 79.7 91 51.6
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.1e-13 79.3 92 48.9
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 2.7e-13 79.0 87 44.8
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 2.7e-13 79.0 123 43.1
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 3.6e-13 78.6 102 49.0
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 6.1e-13 77.8 98 49.0
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 6.1e-13 77.8 108 43.5
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 6.1e-13 77.8 101 44.6
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 6.1e-13 77.8 92 47.8
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 8.0e-13 77.4 97 49.5
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 8.0e-13 77.4 96 42.7
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 1.0e-12 77.0 95 46.3
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 1.8e-12 76.3 111 46.8
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 2.3e-12 75.9 100 47.0
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 2.3e-12 75.9 111 45.9
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 2.3e-12 75.9 95 47.4
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.3e-12 75.9 90 54.4
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 3.0e-12 75.5 99 47.5
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 3.0e-12 75.5 111 45.9
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 3.0e-12 75.5 101 44.6
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 5.2e-12 74.7 98 46.9
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.2e-12 74.7 95 44.2
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 5.2e-12 74.7 96 49.0
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 5.2e-12 74.7 98 43.9
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 6.8e-12 74.3 94 43.6
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 6.8e-12 74.3 90 54.4
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 8.8e-12 73.9 91 47.3
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.2e-11 73.6 98 49.0
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.5e-11 73.2 104 43.3
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 2.0e-11 72.8 95 44.2
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 2.6e-11 72.4 105 44.8
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 2.6e-11 72.4 102 44.1
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 2.6e-11 72.4 111 45.9
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 2.6e-11 72.4 111 45.9
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 2.6e-11 72.4 111 45.9
PGSC0003DMG400013448 Solanum tuberosum HOM05D003940 ORTHO05D004461 2.6e-11 72.4 61 65.6
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 3.4e-11 72.0 92 46.7
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 3.4e-11 72.0 109 45.0
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 3.4e-11 72.0 98 48.0
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 4.4e-11 71.6 124 41.1
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 4.4e-11 71.6 117 40.2
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 4.4e-11 71.6 110 47.3
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 9.8e-11 70.5 102 46.1
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 9.8e-11 70.5 95 45.3
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 2.2e-10 69.3 104 47.1
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 2.2e-10 69.3 98 46.9
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 2.8e-10 68.9 102 45.1
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 4.8e-10 68.2 95 43.2
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 6.3e-10 67.8 98 44.9
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 6.3e-10 67.8 92 43.5
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 6.3e-10 67.8 92 43.5
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 8.3e-10 67.4 96 44.8
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.1e-09 67.0 101 47.5
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.1e-09 67.0 96 45.8
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 1.4e-09 66.6 94 42.6
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 1.4e-09 66.6 94 42.6
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 2.4e-09 65.9 94 44.7
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 2.4e-09 65.9 96 43.8
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 3.1e-09 65.5 94 42.6
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 3.1e-09 65.5 105 44.8
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 4.1e-09 65.1 94 42.6
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 1.2e-08 63.5 102 42.2
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 1.6e-08 63.2 97 41.2
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 1.6e-08 63.2 97 41.2
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 1.6e-08 63.2 123 39.0
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 4.5e-08 61.6 111 40.5
FvH4_7g33480 Fragaria vesca HOM05D003940 ORTHO05D004461 4.5e-08 61.6 71 47.9
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 1.0e-07 60.5 99 39.4
FAN26G1611 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.3e-07 60.1 83 44.6
HPP92_025972 Vanilla planifolia HOM05D027912 ORTHO05D004461 8.6e-07 57.4 95 40.0
ATR0680G398 Amborella trichopoda HOM05D003940 ORTHO05D004461 3.3e-06 55.5 83 47.0
HPP92_008406 Vanilla planifolia HOM05D027912 ORTHO05D004461 4.2e-06 55.1 113 36.3
HPP92_027996 Vanilla planifolia HOM05D027912 ORTHO05D004461 4.2e-06 55.1 105 39.0
unitig_33.g30216 Utricularia gibba HOM05D003940 ORTHO05D004461 7.2e-06 54.3 47 61.7


User provided reference genes

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