Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 3.3e-264 914.4 444 100.0
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 2.4e-259 898.3 444 97.7
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 2.0e-253 878.6 444 95.7
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 5.6e-224 780.8 444 83.8
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 2.8e-223 778.5 444 84.5
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 7.6e-221 770.4 444 83.3
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 3.2e-219 765.0 444 82.0
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 6.5e-188 661.0 444 69.1
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 4.6e-186 654.8 444 69.4
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 3.9e-185 651.7 443 68.8
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 6.3e-183 644.4 456 67.8
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 3.4e-181 638.6 444 67.3
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 2.2e-180 636.0 443 68.2
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 2.9e-180 635.6 444 68.2
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 8.5e-180 634.0 444 68.0
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 7.2e-179 630.9 432 70.1
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 3.7e-175 618.6 444 66.0
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 1.2e-173 613.6 444 65.1
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 1.3e-172 610.1 442 66.1
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 1.1e-171 607.1 444 65.3
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 1.4e-171 606.7 442 65.8
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 2.5e-171 605.9 446 65.2
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 5.5e-171 604.7 444 64.0
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 9.4e-171 604.0 444 63.5
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 4.7e-170 601.7 444 65.8
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 8.8e-169 597.4 477 60.8
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 9.7e-168 594.0 444 63.7
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.7e-167 593.2 444 65.3
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 2.8e-167 592.4 444 65.5
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 8.2e-167 590.9 444 63.3
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 1.1e-166 590.5 444 64.0
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 1.8e-166 589.7 443 63.2
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 5.3e-166 588.2 443 63.0
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 7.0e-166 587.8 444 63.3
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 7.0e-166 587.8 444 63.7
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 1.2e-165 587.0 444 64.4
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 2.6e-165 585.9 442 63.8
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 3.5e-165 585.5 445 63.8
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 3.5e-165 585.5 446 60.8
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 5.9e-165 584.7 444 61.7
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 3.8e-164 582.0 444 62.6
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 6.5e-164 581.3 445 64.3
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 8.5e-164 580.9 444 60.4
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 1.1e-163 580.5 444 64.2
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 1.5e-163 580.1 442 62.2
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.9e-163 579.7 445 62.5
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 5.5e-163 578.2 443 62.1
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 5.5e-163 578.2 446 62.6
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 9.4e-163 577.4 418 66.7
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 2.1e-162 576.2 442 62.4
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 3.6e-162 575.5 445 62.2
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 3.6e-162 575.5 444 61.5
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 6.1e-162 574.7 445 61.1
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 6.1e-162 574.7 444 61.7
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 8.0e-162 574.3 489 57.9
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 4.0e-161 572.0 445 61.6
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 1.2e-160 570.5 446 59.9
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 1.2e-160 570.5 446 60.5
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 1.5e-160 570.1 444 61.9
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 4.4e-160 568.5 442 62.2
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 1.7e-159 566.6 444 62.6
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 1.8e-158 563.1 444 60.8
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 9.1e-158 560.8 447 60.4
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 4.5e-157 558.5 444 61.0
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 2.2e-156 556.2 447 59.5
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 6.5e-156 554.7 444 59.9
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 4.2e-155 552.0 442 61.3
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 9.4e-155 550.8 444 59.9
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 1.2e-154 550.4 445 59.6
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 1.2e-154 550.4 445 59.6
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.4e-153 547.0 364 70.9
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 2.0e-152 543.1 444 59.7
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 1.7e-151 540.0 420 61.2
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 2.2e-151 539.7 442 59.7
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 3.7e-151 538.9 444 59.2
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 4.8e-151 538.5 444 59.0
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 2.4e-150 536.2 442 60.4
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 1.6e-149 533.5 459 57.7
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 3.5e-149 532.3 444 59.5
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 3.5e-149 532.3 444 59.5
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 1.7e-148 530.0 446 59.9
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 1.7e-148 530.0 446 59.9
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 5.0e-148 528.5 364 70.3
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 1.5e-147 526.9 444 57.9
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 1.2e-146 523.9 400 62.5
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 1.2e-146 523.9 440 60.9
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 1.3e-143 513.8 444 59.0
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 1.1e-142 510.8 383 65.0
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 1.4e-142 510.4 444 57.0
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 1.4e-142 510.4 386 63.2
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.8e-142 510.0 419 60.4
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 1.6e-138 496.9 442 56.3
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 2.1e-138 496.5 382 63.9
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 2.2e-135 486.5 381 60.4
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 1.6e-133 480.3 444 52.0
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 2.7e-133 479.6 367 64.0
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 6.0e-133 478.4 444 54.7
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 1.0e-132 477.6 447 54.4
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 1.3e-132 477.2 444 51.8
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 3.0e-132 476.1 390 59.5
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 1.5e-131 473.8 445 53.5
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 8.0e-130 468.0 353 65.4
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 7.0e-126 454.9 445 53.3
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 7.0e-126 454.9 445 53.3
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 7.0e-126 454.9 445 53.3
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 6.6e-124 448.4 463 50.8
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 1.2e-120 437.6 417 52.8
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 1.2e-120 437.6 444 52.0
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 2.2e-119 433.3 458 49.8
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 2.4e-118 429.9 445 50.1
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 2.5e-115 419.9 449 50.3
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 1.3e-111 407.5 418 52.2
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 1.8e-105 387.1 308 61.4
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 4.0e-105 386.0 308 61.4
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 2.6e-96 356.7 444 43.2
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 9.9e-96 354.8 446 46.0
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 4.6e-93 345.9 439 42.6
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 3.3e-91 339.7 230 70.9
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 7.4e-91 338.6 442 40.7
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 3.7e-90 336.3 426 43.2
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 6.2e-90 335.5 245 64.5
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 1.4e-89 334.3 445 42.7
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 1.0e-87 328.2 358 51.4
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 1.7e-87 327.4 436 41.1
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 1.9e-83 313.9 446 43.3
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 7.4e-83 312.0 382 45.3
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 7.4e-75 285.4 312 50.0
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 7.2e-70 268.9 184 68.5
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 2.7e-69 266.9 231 59.7
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 5.5e-62 242.7 513 32.9
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 5.1e-60 236.1 486 34.0
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 5.7e-51 206.1 142 71.1
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.6e-48 198.0 148 59.5
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 3.0e-36 157.1 102 67.6
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 9.8e-35 152.1 497 29.2
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 5.9e-32 142.9 137 52.6
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 2.0e-27 127.9 93 65.6
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 4.6e-24 116.7 89 64.0
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 1.2e-21 108.6 72 66.7
HanXRQChr12g0370191 Helianthus annuus HOM05D001043 ORTHO05D006432 5.6e-14 83.2 69 56.5
MCO09G831 Micromonas commoda HOM05D001043 ORTHO05D006432 2.8e-13 80.9 381 28.1
SEGI_33750 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 1.1e-12 79.0 97 44.3


User provided reference genes

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