Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 4.7e-149 531.2 270 100.0
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 7.5e-147 523.9 270 98.9
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 1.3e-143 513.1 270 97.0
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 6.8e-132 474.2 270 89.3
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 2.0e-131 472.6 270 88.1
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 5.8e-131 471.1 270 87.8
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 2.1e-125 452.6 270 83.7
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 4.0e-124 448.4 270 83.7
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.3e-122 443.4 254 87.4
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 6.0e-120 434.5 252 86.1
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 8.1e-101 370.9 269 69.9
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 2.2e-98 362.8 269 68.4
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 4.9e-98 361.7 268 67.2
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 8.4e-98 360.9 270 68.9
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 1.0e-95 354.0 269 67.3
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 2.3e-95 352.8 265 67.2
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 6.7e-95 351.3 268 67.9
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 6.7e-95 351.3 206 85.9
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 5.7e-94 348.2 267 67.0
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 7.4e-94 347.8 266 66.2
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 2.1e-93 346.3 268 65.7
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 2.8e-93 345.9 273 64.8
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 4.8e-93 345.1 271 66.8
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 6.2e-93 344.7 238 70.2
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 5.3e-92 341.7 205 81.0
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 5.3e-92 341.7 268 66.0
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 6.9e-92 341.3 266 65.0
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 9.0e-92 340.9 268 65.3
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 9.0e-92 340.9 270 65.9
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 2.0e-91 339.7 266 64.3
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 2.0e-91 339.7 268 64.9
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 2.6e-91 339.3 267 64.0
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 3.4e-91 339.0 231 72.7
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 3.4e-91 339.0 205 81.0
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 4.5e-91 338.6 268 66.4
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 4.5e-91 338.6 268 66.4
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 4.5e-91 338.6 268 63.4
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 1.3e-90 337.0 223 74.9
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.3e-90 337.0 241 71.0
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 1.7e-90 336.7 271 64.9
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 2.9e-90 335.9 267 65.2
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 3.8e-90 335.5 250 70.0
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 5.0e-90 335.1 269 63.2
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 8.4e-90 334.3 240 69.2
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 1.1e-89 334.0 205 77.6
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 1.1e-89 334.0 269 64.3
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 1.4e-89 333.6 240 69.6
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 1.4e-89 333.6 238 71.0
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 3.2e-89 332.4 226 73.9
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 3.2e-89 332.4 268 63.4
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 3.2e-89 332.4 240 68.8
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 4.2e-89 332.0 236 72.0
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 5.5e-89 331.6 206 78.2
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 5.5e-89 331.6 240 69.6
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 5.5e-89 331.6 207 76.8
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 7.1e-89 331.3 267 64.0
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 7.1e-89 331.3 264 64.0
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 9.3e-89 330.9 211 76.3
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 9.3e-89 330.9 245 69.0
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 9.3e-89 330.9 270 63.3
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 1.6e-88 330.1 205 78.0
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 2.1e-88 329.7 210 76.7
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 2.7e-88 329.3 209 76.1
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 4.6e-88 328.6 245 69.0
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 6.1e-88 328.2 211 75.8
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.0e-87 327.4 266 64.3
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 1.0e-87 327.4 228 71.5
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 2.3e-87 326.2 196 86.7
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 2.3e-87 326.2 232 69.8
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 3.9e-87 325.5 239 67.8
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 3.9e-87 325.5 270 63.0
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 5.1e-87 325.1 249 65.5
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 5.1e-87 325.1 229 71.6
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 6.7e-87 324.7 266 61.7
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 6.7e-87 324.7 240 67.5
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 6.7e-87 324.7 253 66.8
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 2.5e-86 322.8 248 65.7
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 3.3e-86 322.4 240 66.7
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 4.3e-86 322.0 214 74.3
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 7.4e-86 321.2 207 74.9
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 9.7e-86 320.9 205 75.1
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 2.2e-85 319.7 231 69.3
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 4.8e-85 318.5 239 66.9
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 6.3e-85 318.2 207 76.8
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 6.3e-85 318.2 248 62.9
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 1.1e-84 317.4 247 65.2
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 3.1e-84 315.8 232 69.0
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 4.1e-84 315.5 269 62.8
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 4.1e-84 315.5 264 62.1
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 5.3e-84 315.1 232 67.7
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 5.3e-84 315.1 261 62.1
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 9.0e-84 314.3 267 63.3
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 9.0e-84 314.3 268 58.6
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 1.2e-83 313.9 234 65.4
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 1.5e-83 313.5 234 66.2
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 1.5e-83 313.5 234 65.4
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 1.5e-83 313.5 232 68.1
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 1.5e-83 313.5 234 67.1
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 7.7e-83 311.2 233 67.8
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 7.7e-83 311.2 232 67.7
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 7.7e-83 311.2 228 67.1
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 7.2e-81 304.7 266 61.7
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 1.6e-80 303.5 266 61.3
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 6.7e-79 298.1 193 74.6
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.5e-78 297.0 242 62.8
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 4.3e-78 295.4 244 62.3
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 8.2e-77 291.2 217 66.8
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 8.5e-74 281.2 221 66.5
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 1.4e-73 280.4 228 61.4
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 1.4e-73 280.4 206 65.5
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 1.9e-73 280.0 221 61.5
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 2.5e-73 279.6 202 67.8
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 1.4e-71 273.9 239 56.5
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 1.8e-71 273.5 239 59.8
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 8.2e-69 264.6 206 63.6
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 2.2e-61 240.0 215 61.4
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 2.8e-61 239.6 179 69.3
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 3.1e-60 236.1 206 55.8
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 2.0e-59 233.4 227 52.9
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 2.5e-57 226.5 205 52.7
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 5.7e-54 215.3 214 52.3
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 1.0e-50 204.5 209 50.7
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 5.0e-50 202.2 253 42.3
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 7.2e-49 198.4 241 39.8
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 1.6e-48 197.2 119 75.6
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 8.0e-48 194.9 172 59.9
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 8.8e-47 191.4 159 64.2
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 3.5e-43 179.5 109 79.8
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 6.4e-37 158.7 212 39.6
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 2.6e-30 136.7 102 68.6
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 1.3e-29 134.4 135 56.3
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 2.2e-29 133.7 130 56.9
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 1.4e-23 114.4 86 69.8
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 8.9e-23 111.7 167 37.1
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 1.2e-22 111.3 104 55.8
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 2.8e-16 90.1 61 75.4
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 5.2e-15 85.9 310 30.3
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 1.2e-11 74.7 101 45.5
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 2.3e-10 70.5 44 77.3
SGA_v2.0_scaffold250G44984 Striga asiatica HOM05D005616 ORTHO05D401959 6.2e-08 62.4 60 56.7


User provided reference genes

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