Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g017350 Solanum pennellii HOM05D007537 ORTHO05D009602 5.7e-217 757.3 381 100.0
Solyc06g051360.3 Solanum lycopersicum HOM05D007537 ORTHO05D009602 2.4e-207 725.3 381 96.3
PGSC0003DMG400024236 Solanum tuberosum HOM05D007537 ORTHO05D009602 2.6e-185 652.1 388 86.9
Nitab4.5_0000797g0160 Nicotiana tabacum HOM05D007537 ORTHO05D009602 4.0e-146 521.9 393 72.3
Nitab4.5_0008231g0020 Nicotiana tabacum HOM05D007537 ORTHO05D009602 5.8e-145 518.1 392 71.2
Peaxi162Scf00284g01051 Petunia axillaris HOM05D007537 ORTHO05D009602 1.5e-137 493.4 397 70.0
Cc02_g06360 Coffea canephora HOM05D007537 ORTHO05D009602 1.4e-111 407.1 389 57.3
CSS0047961 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 4.7e-110 402.1 399 57.9
CSS0001440 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 2.2e-107 393.3 397 56.9
Rhsim09G0177700 Rhododendron simsii HOM05D007537 ORTHO05D009602 8.2e-107 391.3 395 56.5
Duzib114G0965 Durio zibethinus HOM05D007537 ORTHO05D009602 1.8e-106 390.2 390 56.4
Actinidia13942 Actinidia chinensis HOM05D007537 ORTHO05D009602 4.2e-103 379.0 388 57.0
COL.COLO4_25746 Corchorus olitorius HOM05D007537 ORTHO05D009602 1.1e-100 370.9 392 55.1
CSS0034530 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 9.7e-100 367.9 392 56.1
vmacro10037 Vaccinium macrocarpon HOM05D007537 ORTHO05D009602 9.1e-98 361.3 393 52.9
Thecc.10G014900 Theobroma cacao HOM05D007537 ORTHO05D009602 7.7e-97 358.2 388 52.6
Nn2g10869 Nelumbo nucifera HOM05D007537 ORTHO05D009602 5.5e-95 352.1 409 51.6
TAR633G2636 Trochodendron aralioides HOM05D007537 ORTHO05D009602 1.0e-93 347.8 387 54.3
Manes.07G130900 Manihot esculenta HOM05D007537 ORTHO05D009602 2.3e-93 346.7 392 53.1
Cfa001307 Carpinus fangiana HOM05D007537 ORTHO05D009602 8.8e-93 344.7 389 52.4
CiPaw.01G299800 Carya illinoinensis HOM05D007537 ORTHO05D009602 1.1e-90 337.8 388 51.8
Sabra08G0051400 Salix brachista HOM05D007537 ORTHO05D009602 5.3e-90 335.5 374 52.1
Aqoxy2G00863 Aquilegia oxysepala HOM05D007537 ORTHO05D009602 2.0e-89 333.6 396 51.5
RcHm_v2.0_Chr1g0370441 Rosa chinensis HOM05D007537 ORTHO05D009602 5.9e-89 332.0 397 50.6
MSTRG.27338 Avicennia marina HOM05D007537 ORTHO05D009602 7.7e-89 331.6 397 51.4
FAN03G1922 Fragaria x ananassa HOM05D007537 ORTHO05D009602 5.0e-88 328.9 394 50.0
FAN10G0956 Fragaria x ananassa HOM05D007537 ORTHO05D009602 8.5e-88 328.2 397 49.6
arahy.Tifrunner.gnm1.ann1.EU49LP Arachis hypogaea HOM05D007537 ORTHO05D009602 1.5e-87 327.4 402 50.2
Potri.008G069800 Populus trichocarpa HOM05D007537 ORTHO05D009602 1.9e-87 327.0 391 50.9
FAN06G1236 Fragaria x ananassa HOM05D007537 ORTHO05D009602 2.7e-86 323.2 396 51.5
Haze_17238 Corylus avellana HOM05D007537 ORTHO05D009602 6.1e-86 322.0 389 51.9
Gohir.D13G016000 Gossypium hirsutum HOM05D007537 ORTHO05D009602 2.3e-85 320.1 394 49.0
arahy.Tifrunner.gnm1.ann1.QLS93X Arachis hypogaea HOM05D007537 ORTHO05D009602 4.0e-85 319.3 414 48.8
LjContig00357g0012610 Lotus japonicus HOM05D007537 ORTHO05D009602 4.0e-85 319.3 356 53.1
FAN01G2979 Fragaria x ananassa HOM05D007537 ORTHO05D009602 1.2e-84 317.8 396 51.0
Medtr5g082850 Medicago truncatula HOM05D007537 ORTHO05D009602 2.0e-84 317.0 355 51.8
DCAR_011821 Daucus carota HOM05D007537 ORTHO05D009602 7.5e-84 315.1 364 50.5
ClCG07G004310 Citrullus lanatus HOM05D007537 ORTHO05D009602 9.8e-84 314.7 391 49.1
Prupe.2G251400 Prunus persica HOM05D007537 ORTHO05D009602 9.8e-84 314.7 401 50.4
Hund13875 Selenicereus undatus HOM05D007537 ORTHO05D009602 2.8e-83 313.2 419 48.4
Ca_05971_v3 Cicer arietinum L. HOM05D007537 ORTHO05D009602 1.1e-82 311.2 387 47.8
Ca_05972_v3 Cicer arietinum L. HOM05D007537 ORTHO05D009602 1.1e-82 311.2 387 47.8
FvH4_7g24610 Fragaria vesca HOM05D007537 ORTHO05D009602 1.1e-82 311.2 398 50.3
Glyma.02G257900 Glycine max HOM05D007537 ORTHO05D009602 9.1e-82 308.1 375 46.9
PSO384G1417 Papaver somniferum HOM05D007537 ORTHO05D009602 7.7e-81 305.1 429 46.2
Psat2g031640 Pisum sativum HOM05D007537 ORTHO05D009602 2.9e-80 303.1 386 47.7
Sed0013636 Sechium edule HOM05D007537 ORTHO05D009602 6.6e-80 302.0 387 47.8
Ciclev10031789m.g Citrus clementina HOM05D007537 ORTHO05D009602 6.1e-78 295.4 369 49.3
SGA_v2.0_scaffold44G16701 Striga asiatica HOM05D007537 ORTHO05D009602 8.0e-78 295.0 400 47.2
VMungo0647G0018 Vigna mungo HOM05D007537 ORTHO05D009602 4.4e-76 289.3 387 45.7
Gorai.013G017500 Gossypium raimondii HOM05D007537 ORTHO05D009602 1.3e-75 287.7 393 46.3
GSVIVG01032801001 Vitis vinifera HOM05D007537 ORTHO05D009602 1.3e-75 287.7 349 50.4
Aa31LG3G4310 Aethionema arabicum HOM05D007537 ORTHO05D009602 7.0e-74 282.0 389 45.8
Migut.F00693 Erythranthe guttata HOM05D007537 ORTHO05D009602 9.2e-74 281.6 316 51.9
PGR044G1397 Punica granatum HOM05D007537 ORTHO05D009602 3.5e-73 279.6 394 45.4
Phvul.008G223100 Phaseolus vulgaris HOM05D007537 ORTHO05D009602 1.3e-72 277.7 388 45.6
MBI03_g40958_MAGBIO Magnolia biondii HOM05D007537 ORTHO05D009602 2.3e-72 276.9 382 46.6
ECA233G1171 Erigeron canadensis HOM05D007537 ORTHO05D009602 2.9e-72 276.6 388 45.1
THA.LOC104823184 Tarenaya hassleriana HOM05D007537 ORTHO05D009602 5.0e-72 275.8 358 48.0
TPR.G38413 Trifolium pratense HOM05D007537 ORTHO05D009602 8.6e-72 275.0 333 48.0
Gohir.A13G014800 Gossypium hirsutum HOM05D007537 ORTHO05D009602 7.3e-71 271.9 303 52.8
AUR62022900 Chenopodium quinoa HOM05D007537 ORTHO05D009602 1.6e-70 270.8 388 46.4
Lsat_1_v5_gn_8_12620 Lactuca sativa HOM05D007537 ORTHO05D009602 1.6e-70 270.8 300 49.3
BcaB04g21148 Brassica carinata HOM05D007537 ORTHO05D009602 2.0e-68 263.8 394 43.7
BolC1t05333H Brassica oleracea HOM05D007537 ORTHO05D009602 3.4e-68 263.1 395 43.5
AUR62012265 Chenopodium quinoa HOM05D007537 ORTHO05D009602 4.4e-68 262.7 447 42.5
HanXRQChr08g0221761 Helianthus annuus HOM05D007537 ORTHO05D009602 4.4e-68 262.7 315 50.8
BcaC09g48157 Brassica carinata HOM05D007537 ORTHO05D009602 2.9e-67 260.0 395 43.5
Lalb_Chr04g0250531 Lupinus albus HOM05D007537 ORTHO05D009602 3.7e-67 259.6 395 42.3
CARHR085730 Cardamine hirsuta HOM05D007537 ORTHO05D009602 1.4e-66 257.7 390 43.6
Sp3g09450 Schrenkiella parvula HOM05D007537 ORTHO05D009602 1.4e-66 257.7 393 43.0
Ah.10g036610 Amaranthus hybridus HOM05D007537 ORTHO05D009602 1.9e-66 257.3 408 42.6
Thhalv10020993m.g Eutrema salsugineum HOM05D007537 ORTHO05D009602 2.4e-66 256.9 394 42.6
Carub.0003s1045 Capsella rubella HOM05D007537 ORTHO05D009602 1.1e-63 248.1 400 40.8
Eucgr.J00197 Eucalyptus grandis HOM05D007537 ORTHO05D009602 3.3e-63 246.5 302 48.3
BraA01t04198Z Brassica rapa HOM05D007537 ORTHO05D009602 7.3e-63 245.4 390 41.3
Dinv21742 Davidia involucrata HOM05D007537 ORTHO05D009602 3.6e-62 243.0 203 62.6
AL3G22670 Arabidopsis lyrata HOM05D007537 ORTHO05D009602 1.8e-61 240.7 395 42.5
CsaV3_5G010250 Cucumis sativus L. HOM05D007537 ORTHO05D009602 2.6e-60 236.9 280 51.1
AT3G11150 Arabidopsis thaliana HOM05D007537 ORTHO05D009602 5.8e-60 235.7 391 41.4
MELO3C026792.2 Cucumis melo HOM05D007537 ORTHO05D009602 7.5e-60 235.3 279 50.5
Sc10g0002440 Simmondsia chinensis HOM05D007537 ORTHO05D009602 1.2e-57 228.0 390 42.3
EL10Ac2g04847 Beta vulgaris HOM05D007537 ORTHO05D009602 5.1e-56 222.6 412 40.5
BcaB04g21146 Brassica carinata HOM05D007537 ORTHO05D009602 5.2e-45 186.0 282 43.3
Oeu004692.1 Olea europaea HOM05D007537 ORTHO05D009602 1.6e-38 164.5 228 45.2
HPP92_007582 Vanilla planifolia HOM05D007537 ORTHO05D009602 3.6e-38 163.3 378 34.4
Atru.chr12.52 Acer truncatum HOM05D007537 ORTHO05D009602 1.4e-37 161.4 331 37.5
Os01g0830500 Oryza sativa ssp. japonica HOM05D007537 ORTHO05D009602 2.1e-33 147.5 354 31.9
CSS0044280 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 1.3e-32 144.8 121 58.7
ATR0681G199 Amborella trichopoda HOM05D007537 ORTHO05D009602 8.7e-32 142.1 392 32.9
MD01G1154400 Malus domestica HOM05D007537 ORTHO05D009602 3.1e-29 133.7 137 55.5
Glyma.14G058602 Glycine max HOM05D007537 ORTHO05D009602 2.1e-25 120.9 201 41.8
SEGI_28444 Sequoiadendron giganteum HOM05D007537 ORTHO05D008256 8.1e-22 109.0 388 26.5
SEGI_29994 Sequoiadendron giganteum HOM05D007537 ORTHO05D008256 8.1e-22 109.0 388 26.5
Oeu004690.1 Olea europaea HOM05D007537 ORTHO05D009602 2.5e-18 97.4 110 52.7
SEGI_01266 Sequoiadendron giganteum HOM05D007537 ORTHO05D009602 4.3e-15 86.7 398 23.6
SEGI_41305 Sequoiadendron giganteum HOM05D007537 ORTHO05D009602 4.1e-13 80.1 391 22.8
MD01G1154300 Malus domestica HOM05D007537 ORTHO05D009602 1.2e-12 78.6 97 59.8
Peaxi162Scf00038g00918 Petunia axillaris HOM05D006831 ORTHO05D008256 2.2e-11 74.3 326 26.1
DCAR_016191 Daucus carota HOM05D006831 ORTHO05D008256 1.4e-10 71.6 295 23.1
Sc24g0000130 Simmondsia chinensis HOM05D000018 ORTHO05D001766 3.2e-10 70.5 235 27.2
EL10Ac8g19896 Beta vulgaris HOM05D000018 ORTHO05D001766 9.3e-10 68.9 210 29.0
Hma1.2p1_0430F.1_g151466 Hydrangea macrophylla HOM05D006831 ORTHO05D008256 1.6e-09 68.2 325 24.6
Rhsim08G0227100 Rhododendron simsii HOM05D006831 ORTHO05D008256 2.1e-09 67.8 347 24.2
vmacro18857 Vaccinium macrocarpon HOM05D006831 ORTHO05D008256 3.0e-08 63.9 371 25.1
Dinv30442 Davidia involucrata HOM05D006831 ORTHO05D008256 6.7e-08 62.8 304 25.3
FAN02G3719 Fragaria x ananassa HOM05D006831 ORTHO05D008256 8.7e-08 62.4 320 21.9
arahy.Tifrunner.gnm1.ann1.PZV35V Arachis hypogaea HOM05D000858 ORTHO05D001578 1.5e-07 61.6 249 23.7
CSS0014632 Camellia sinensis var. sinensis HOM05D006831 ORTHO05D008256 2.5e-07 60.8 364 23.1
QL05p020342 Quercus lobata HOM05D006831 ORTHO05D008256 2.5e-07 60.8 296 23.6
Prupe.3G060100 Prunus persica HOM05D006831 ORTHO05D008256 3.3e-07 60.5 299 23.1
arahy.Tifrunner.gnm1.ann1.GJFG9F Arachis hypogaea HOM05D000018 ORTHO05D001766 4.3e-07 60.1 238 26.1
PSO339G1224 Papaver somniferum HOM05D000858 ORTHO05D001578 4.3e-07 60.1 246 26.8
Ciclev10025849m.g Citrus clementina HOM05D006831 ORTHO05D008256 5.7e-07 59.7 343 23.9
Sopen05g011720 Solanum pennellii HOM05D000004 ORTHO05D000002 5.7e-07 59.7 37 70.3
CAN.G1143.6 Capsicum annuum HOM05D006831 ORTHO05D008256 7.4e-07 59.3 90 32.2
Potri.001G189400 Populus trichocarpa HOM05D006831 ORTHO05D008256 7.4e-07 59.3 301 22.9
Psat4g173520 Pisum sativum HOM05D000858 ORTHO05D001578 9.7e-07 58.9 245 24.5
RcHm_v2.0_Chr5g0003991 Rosa chinensis HOM05D000018 ORTHO05D001766 1.3e-06 58.5 239 23.0
PGSC0003DMG400007231 Solanum tuberosum HOM05D000018 ORTHO05D000187 1.6e-06 58.2 240 22.5
CAN.G541.11 Capsicum annuum HOM05D000018 ORTHO05D000187 2.2e-06 57.8 265 21.9
Lj5A54G57 Lonicera japonica HOM05D006831 ORTHO05D008256 2.2e-06 57.8 318 22.0
arahy.Tifrunner.gnm1.ann1.ZG0GPL Arachis hypogaea HOM05D000018 ORTHO05D001766 2.8e-06 57.4 238 26.1
Sabra01G0151300 Salix brachista HOM05D006831 ORTHO05D008256 2.8e-06 57.4 310 22.6
DCAR_010021 Daucus carota HOM05D000018 ORTHO05D001766 3.7e-06 57.0 216 24.5
Nitab4.5_0000662g0210 Nicotiana tabacum HOM05D000018 ORTHO05D010444 3.7e-06 57.0 219 23.3
RcHm_v2.0_Chr2g0140341 Rosa chinensis HOM05D006831 ORTHO05D008256 3.7e-06 57.0 324 22.2
Sopen03g039800 Solanum pennellii HOM05D006831 ORTHO05D008256 3.7e-06 57.0 85 34.1
PGSC0003DMG400002528 Solanum tuberosum HOM05D006831 ORTHO05D008256 3.7e-06 57.0 85 34.1
FAN05G0684 Fragaria x ananassa HOM05D000018 ORTHO05D000187 4.8e-06 56.6 224 24.1
Prupe.6G258800 Prunus persica HOM05D000018 ORTHO05D000187 4.8e-06 56.6 221 22.6
QL05p058025 Quercus lobata HOM05D000858 ORTHO05D001578 4.8e-06 56.6 264 24.2
Solyc03g116270.3 Solanum lycopersicum HOM05D000018 ORTHO05D007339 4.8e-06 56.6 234 24.4
BcaB05g25140 Brassica carinata HOM05D000858 ORTHO05D001578 6.3e-06 56.2 242 24.8
CSS0010875 Camellia sinensis var. sinensis HOM05D000858 ORTHO05D001578 6.3e-06 56.2 340 24.4
DCAR_022528 Daucus carota HOM05D000018 ORTHO05D001766 6.3e-06 56.2 211 26.1
Lj6g0027045 Lotus japonicus HOM05D000018 ORTHO05D000187 6.3e-06 56.2 241 22.0
Nn6g35309 Nelumbo nucifera HOM05D006831 ORTHO05D008256 6.3e-06 56.2 311 24.1
Sabra16G0249200 Salix brachista HOM05D000858 ORTHO05D001578 6.3e-06 56.2 259 25.1
Sed0026254 Sechium edule HOM05D000858 ORTHO05D001578 6.3e-06 56.2 271 24.7
SMO172G0001 Selaginella moellendorffii HOM05D000018 ORTHO05D001172 6.3e-06 56.2 227 22.9
Solyc02g071490.4 Solanum lycopersicum HOM05D000018 ORTHO05D000187 6.3e-06 56.2 247 21.1
arahy.Tifrunner.gnm1.ann1.BL6FL8 Arachis hypogaea HOM05D000018 ORTHO05D000187 8.2e-06 55.8 241 24.9
MSTRG.11030 Avicennia marina HOM05D006831 ORTHO05D008256 8.2e-06 55.8 324 23.5
Ciclev10021090m.g Citrus clementina HOM05D000858 ORTHO05D001578 8.2e-06 55.8 244 26.2
ECA233G5662 Erigeron canadensis HOM05D000858 ORTHO05D002556 8.2e-06 55.8 256 23.4
FvH4_3g02670 Fragaria vesca HOM05D000018 ORTHO05D001766 8.2e-06 55.8 230 22.6
FAN14G1280 Fragaria x ananassa HOM05D006831 ORTHO05D008256 8.2e-06 55.8 303 22.8
Gohir.D10G067400 Gossypium hirsutum HOM05D006831 ORTHO05D008256 8.2e-06 55.8 352 22.2
Lsat_1_v5_gn_1_113080 Lactuca sativa HOM05D000018 ORTHO05D000187 8.2e-06 55.8 254 24.4


User provided reference genes

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