Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 0.0e+00 1485.3 727 100.0
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 0.0e+00 1464.5 727 98.6
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 0.0e+00 1283.5 725 86.8
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 0.0e+00 1275.0 727 86.7
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 0.0e+00 1272.7 726 85.8
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 0.0e+00 1226.5 724 83.1
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 6.5e-286 987.3 731 66.9
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 3.9e-275 951.4 723 63.5
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 1.9e-274 949.1 724 63.8
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 6.9e-272 940.6 727 63.1
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 1.5e-271 939.5 776 61.7
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 1.7e-270 936.0 721 63.5
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 7.9e-268 927.2 720 63.2
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 3.0e-267 925.2 717 63.3
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 6.7e-267 924.1 690 65.2
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 6.7e-267 924.1 720 63.1
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 7.4e-266 920.6 730 62.6
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 7.0e-264 914.1 699 63.5
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.5e-263 912.9 708 63.7
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 1.0e-262 910.2 727 61.1
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 8.5e-262 907.1 720 61.9
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 9.4e-261 903.7 725 61.9
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 3.9e-259 898.3 715 61.5
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 3.9e-259 898.3 722 61.1
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 1.5e-258 896.3 723 60.7
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 7.4e-258 894.0 715 60.6
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 1.7e-257 892.9 710 60.8
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 3.1e-256 888.6 706 61.8
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 9.1e-256 887.1 699 62.5
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 2.0e-255 885.9 687 61.7
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 5.9e-255 884.4 719 60.5
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.0e-254 883.6 690 62.5
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 1.0e-254 883.6 723 61.7
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.1e-253 880.2 690 62.5
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 3.2e-253 878.6 701 61.3
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 7.2e-253 877.5 690 62.3
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 1.6e-252 876.3 728 59.9
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.8e-251 872.8 717 60.9
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 2.6e-250 869.0 720 59.2
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 5.7e-250 867.8 656 63.6
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 2.8e-249 865.5 713 61.2
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 4.8e-249 864.8 720 59.0
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 8.2e-249 864.0 714 59.9
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.1e-248 863.6 717 60.1
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 9.1e-248 860.5 616 67.5
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 5.9e-247 857.8 749 57.1
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.3e-246 856.7 684 61.7
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 2.2e-246 855.9 716 59.4
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 2.2e-246 855.9 683 61.6
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 2.2e-246 855.9 721 59.2
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 3.8e-246 855.1 715 59.0
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 3.8e-246 855.1 688 61.8
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 1.1e-245 853.6 698 61.3
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 3.2e-245 852.0 724 60.9
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.2e-244 850.1 715 59.2
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 2.1e-244 849.4 710 59.9
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 3.6e-244 848.6 704 60.5
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 1.4e-243 846.7 705 60.3
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 1.4e-243 846.7 715 59.2
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 4.0e-243 845.1 677 60.4
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 1.5e-242 843.2 690 60.9
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.5e-242 843.2 738 59.3
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 3.4e-242 842.0 711 59.4
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 7.5e-242 840.9 716 57.1
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 1.7e-241 839.7 714 58.1
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 3.7e-241 838.6 721 58.1
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.4e-240 836.6 753 57.8
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 1.6e-239 833.2 593 69.0
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 3.3e-237 825.5 705 59.3
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 9.5e-237 823.9 683 60.3
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 1.2e-234 817.0 678 59.4
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 2.2e-233 812.8 681 59.3
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 4.9e-233 811.6 673 59.3
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 8.3e-233 810.8 633 62.2
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 1.6e-231 806.6 686 57.9
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 2.3e-230 802.7 702 56.3
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 7.3e-229 797.7 592 65.4
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 5.8e-226 788.1 680 57.5
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 1.4e-224 783.5 694 58.1
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 7.0e-224 781.2 701 57.3
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.2e-223 780.4 724 55.4
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 7.8e-223 777.7 619 61.2
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 1.7e-222 776.5 894 47.8
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 5.0e-222 775.0 738 52.8
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.6e-220 770.0 697 55.5
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.2e-218 763.8 709 56.4
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.2e-218 763.8 676 54.3
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 2.0e-218 763.1 689 54.7
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.3e-217 760.4 690 54.2
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 2.9e-217 759.2 680 54.1
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.4e-216 756.1 686 54.2
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 4.1e-216 755.4 694 53.5
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 9.2e-216 754.2 734 53.7
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 1.6e-215 753.4 679 54.1
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 6.0e-215 751.5 686 53.8
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 1.3e-214 750.4 725 52.4
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 1.3e-214 750.4 688 54.2
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 3.0e-214 749.2 733 51.4
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 5.1e-214 748.4 681 53.9
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 2.5e-213 746.1 681 53.5
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 4.3e-213 745.3 734 51.6
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 7.3e-213 744.6 679 55.5
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 1.2e-212 743.8 686 53.4
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 1.2e-212 743.8 686 53.4
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 6.2e-212 741.5 686 52.9
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 1.8e-211 740.0 688 53.3
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 8.9e-211 737.6 688 56.5
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 3.4e-210 735.7 747 50.7
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 3.4e-210 735.7 689 53.1
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.1e-207 726.5 693 52.2
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.5e-207 725.7 722 53.0
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.7e-206 723.4 684 52.2
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 1.1e-205 720.7 681 55.1
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.5e-205 720.3 763 51.0
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 4.4e-202 708.8 652 56.0
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 5.8e-202 708.4 672 56.4
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 9.9e-202 707.6 536 65.7
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 2.4e-200 703.0 691 53.3
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 6.0e-199 698.4 761 47.0
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 3.9e-198 695.7 681 53.7
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 1.2e-196 690.6 679 50.8
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 4.4e-194 682.2 732 48.9
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.3e-193 680.6 701 50.9
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 1.1e-192 677.6 680 52.8
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 7.3e-189 664.8 717 49.7
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.4e-187 660.6 746 49.1
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 7.4e-181 638.3 693 47.8
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 1.6e-180 637.1 531 58.8
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 1.5e-173 614.0 715 47.3
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 3.7e-172 609.4 563 55.6
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 6.2e-172 608.6 327 95.1
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 2.4e-171 606.7 681 48.2
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 2.2e-148 530.4 544 50.4
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 6.8e-134 482.3 326 67.5
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 2.4e-131 473.8 427 52.2
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 3.1e-123 446.8 391 55.8
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 2.0e-114 417.5 281 68.3
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 1.0e-110 405.2 402 51.2
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 2.6e-109 400.6 212 94.8
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 7.3e-104 382.5 214 82.7
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 6.8e-102 375.9 409 48.9
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 8.9e-102 375.6 464 44.8
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 3.0e-97 360.5 315 52.1
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 6.6e-89 332.8 595 35.5
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 1.1e-83 315.5 311 47.6
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 4.2e-83 313.5 579 34.4
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 2.4e-78 297.7 547 34.7
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 1.5e-61 241.9 179 62.6
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 7.9e-58 229.6 211 54.5
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 6.9e-54 216.5 146 68.5
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.9e-51 208.4 211 50.2
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 1.2e-50 205.7 251 47.8
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 3.0e-49 201.1 226 47.3
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 6.9e-46 189.9 121 67.8
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 2.1e-42 178.3 129 63.6
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.5e-40 171.4 391 30.7
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 5.0e-36 157.1 189 47.6
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 5.0e-36 157.1 99 70.7
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 5.0e-36 157.1 99 70.7
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 5.0e-36 157.1 99 70.7
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 1.4e-30 139.0 282 35.1
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 2.5e-27 128.3 256 33.6
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 1.2e-26 125.9 254 33.9
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 6.1e-26 123.6 163 39.9
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 3.8e-20 104.4 59 78.0
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.7e-18 98.2 82 61.0
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 4.7e-18 97.4 238 30.3
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 8.0e-18 96.7 148 38.5
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.8e-14 85.5 131 36.6
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 7.7e-13 80.1 48 70.8
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 7.7e-13 80.1 48 70.8
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 4.7e-10 70.9 54 61.1


User provided reference genes

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