Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g015690 Solanum pennellii HOM05D002855 ORTHO05D004406 7.0e-104 380.6 184 100.0
Sopen10g033910 Solanum pennellii HOM05D002855 ORTHO05D004406 4.1e-96 354.8 184 92.9
Sopen06g015720 Solanum pennellii HOM05D002855 ORTHO05D004406 2.9e-94 348.6 180 92.2
PGSC0003DMG402010988 Solanum tuberosum HOM05D002855 ORTHO05D004406 5.8e-82 307.8 184 79.9
Sopen10g033900 Solanum pennellii HOM05D002855 ORTHO05D004406 5.8e-74 281.2 292 54.1
Sopen10g033890 Solanum pennellii HOM05D002855 ORTHO05D004406 1.7e-73 279.6 174 77.0
Sopen10g033920 Solanum pennellii HOM05D002855 ORTHO05D004406 4.9e-73 278.1 174 76.4
Sopen06g015700 Solanum pennellii HOM05D002855 ORTHO05D004406 8.1e-68 260.8 172 73.8
Nitab4.5_0011917g0020 Nicotiana tabacum HOM05D002855 ORTHO05D004406 1.2e-58 230.3 171 64.9
Nitab4.5_0000202g0400 Nicotiana tabacum HOM05D002855 ORTHO05D004406 3.4e-58 228.8 171 64.3
Sopen06g015670 Solanum pennellii HOM05D002855 ORTHO05D004406 2.9e-57 225.7 145 75.2
Sopen06g015680 Solanum pennellii HOM05D002855 ORTHO05D004406 2.9e-57 225.7 145 75.2
Peaxi162Scf00472g00082 Petunia axillaris HOM05D002855 ORTHO05D004406 6.4e-57 224.6 171 63.2
Manes.04G028200 Manihot esculenta HOM05D002855 ORTHO05D004406 2.1e-55 219.5 168 61.3
Dinv18704 Davidia involucrata HOM05D002855 ORTHO05D004406 2.7e-55 219.2 182 57.7
Phvul.L002003 Phaseolus vulgaris HOM05D002855 ORTHO05D004406 4.6e-55 218.4 168 60.7
VMungo1080G0735 Vigna mungo HOM05D002855 ORTHO05D004406 4.6e-55 218.4 168 60.7
Aqoxy4G03112 Aquilegia oxysepala HOM05D002855 ORTHO05D004406 6.0e-55 218.0 168 60.1
Psat5g281800 Pisum sativum HOM05D002855 ORTHO05D004406 7.9e-55 217.6 168 60.7
QL01p035172 Quercus lobata HOM05D002855 ORTHO05D004406 7.9e-55 217.6 182 57.7
Rhsim01G0223400 Rhododendron simsii HOM05D002855 ORTHO05D004406 7.9e-55 217.6 190 56.3
Cc01_g11990 Coffea canephora HOM05D002855 ORTHO05D004406 1.0e-54 217.2 182 57.1
MD03G1106200 Malus domestica HOM05D002855 ORTHO05D004406 1.0e-54 217.2 168 60.1
Nn2g10571 Nelumbo nucifera HOM05D002855 ORTHO05D004406 1.0e-54 217.2 168 60.1
Prupe.6G088700 Prunus persica HOM05D002855 ORTHO05D004406 1.0e-54 217.2 168 60.1
Duzib168G0993 Durio zibethinus HOM05D002855 ORTHO05D004406 1.3e-54 216.9 173 59.5
Potri.001G233800 Populus trichocarpa HOM05D002855 ORTHO05D004406 1.3e-54 216.9 168 60.1
TAR369G1034 Trochodendron aralioides HOM05D002855 ORTHO05D004406 1.3e-54 216.9 168 59.5
arahy.Tifrunner.gnm1.ann1.3PXT9K Arachis hypogaea HOM05D002855 ORTHO05D004406 1.7e-54 216.5 168 59.5
arahy.Tifrunner.gnm1.ann1.R78DWG Arachis hypogaea HOM05D002855 ORTHO05D004406 1.7e-54 216.5 168 59.5
Ca_01364_v3 Cicer arietinum L. HOM05D002855 ORTHO05D004406 1.7e-54 216.5 168 60.1
Duzib170G0969 Durio zibethinus HOM05D002855 ORTHO05D004406 1.7e-54 216.5 173 57.8
Lj3g0004926 Lotus japonicus HOM05D002855 ORTHO05D004406 1.7e-54 216.5 168 60.1
Nitab4.5_0002380g0080 Nicotiana tabacum HOM05D002855 ORTHO05D004406 1.7e-54 216.5 168 60.1
Nitab4.5_0003784g0030 Nicotiana tabacum HOM05D002855 ORTHO05D004406 1.7e-54 216.5 168 60.1
Peaxi162Scf00836g00219 Petunia axillaris HOM05D002855 ORTHO05D004406 1.7e-54 216.5 168 60.1
Solyc11g072810.2 Solanum lycopersicum HOM05D002855 ORTHO05D004406 1.7e-54 216.5 168 60.1
Sopen11g030480 Solanum pennellii HOM05D002855 ORTHO05D004406 1.7e-54 216.5 168 60.1
PGSC0003DMG400015522 Solanum tuberosum HOM05D002855 ORTHO05D004406 1.7e-54 216.5 168 60.1
CiPaw.13G103000 Carya illinoinensis HOM05D002855 ORTHO05D004406 2.3e-54 216.1 168 59.5
RcHm_v2.0_Chr5g0062031 Rosa chinensis HOM05D002855 ORTHO05D004406 2.3e-54 216.1 168 59.5
Sabra16G0140100 Salix brachista HOM05D002855 ORTHO05D004406 2.3e-54 216.1 168 60.1
CANSAT54G2256 Cannabis sativa HOM05D002855 ORTHO05D004406 3.0e-54 215.7 168 60.1
CiPaw.13G102800 Carya illinoinensis HOM05D002855 ORTHO05D004406 3.0e-54 215.7 168 59.5
COL.COLO4_18410 Corchorus olitorius HOM05D002855 ORTHO05D004406 3.0e-54 215.7 168 59.5
Glyma.15G043500 Glycine max HOM05D002855 ORTHO05D004406 3.0e-54 215.7 168 59.5
Hma1.2p1_0746F.1_g212280 Hydrangea macrophylla HOM05D002855 ORTHO05D004406 3.0e-54 215.7 182 57.7
Lalb_Chr22g0350071 Lupinus albus HOM05D002855 ORTHO05D004406 3.0e-54 215.7 168 59.5
Nn2g12814 Nelumbo nucifera HOM05D002855 ORTHO05D004406 3.0e-54 215.7 168 60.1
Cpa.g.sc139.9 Carica papaya HOM05D002855 ORTHO05D004406 3.9e-54 215.3 168 60.1
Migut.N02644 Erythranthe guttata HOM05D002855 ORTHO05D004406 3.9e-54 215.3 168 58.3
Eucgr.B02434 Eucalyptus grandis HOM05D002855 ORTHO05D004406 3.9e-54 215.3 179 58.1
Glyma.13G330500 Glycine max HOM05D002855 ORTHO05D004406 3.9e-54 215.3 168 59.5
Gohir.A05G099600 Gossypium hirsutum HOM05D002855 ORTHO05D004406 3.9e-54 215.3 168 59.5
Gorai.009G103400 Gossypium raimondii HOM05D002855 ORTHO05D004406 3.9e-54 215.3 168 59.5
Manes.11G137500 Manihot esculenta HOM05D002855 ORTHO05D004406 3.9e-54 215.3 168 60.1
TPR.G11598 Trifolium pratense HOM05D002855 ORTHO05D004406 3.9e-54 215.3 168 59.5
TWI75G0055 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 3.9e-54 215.3 168 60.1
TWI79G0463 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 3.9e-54 215.3 168 60.1
vmacro14496 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 3.9e-54 215.3 174 59.2
MSTRG.18613 Avicennia marina HOM05D002855 ORTHO05D004406 5.1e-54 214.9 168 59.5
FvH4_3g34430 Fragaria vesca HOM05D002855 ORTHO05D004406 5.1e-54 214.9 168 59.5
FAN11G1910 Fragaria x ananassa HOM05D002855 ORTHO05D004406 5.1e-54 214.9 168 59.5
FAN16G1875 Fragaria x ananassa HOM05D002855 ORTHO05D004406 5.1e-54 214.9 168 59.5
FAN21G1667 Fragaria x ananassa HOM05D002855 ORTHO05D004406 5.1e-54 214.9 168 59.5
FAN25G2944 Fragaria x ananassa HOM05D002855 ORTHO05D004406 5.1e-54 214.9 168 59.5
Gohir.A08G000105 Gossypium hirsutum HOM05D002855 ORTHO05D004406 5.1e-54 214.9 168 59.5
Oeu041006.2 Olea europaea HOM05D002855 ORTHO05D004406 5.1e-54 214.9 182 57.7
Sabra09G0017300 Salix brachista HOM05D002855 ORTHO05D004406 5.1e-54 214.9 182 56.6
SHI05981 Sapria himalayana HOM05D002855 ORTHO05D004406 5.1e-54 214.9 178 57.3
CAN.G84.3 Capsicum annuum HOM05D002855 ORTHO05D004406 6.6e-54 214.5 168 59.5
Gohir.D08G009200 Gossypium hirsutum HOM05D002855 ORTHO05D004406 6.6e-54 214.5 168 59.5
Gorai.004G002400 Gossypium raimondii HOM05D002855 ORTHO05D004406 6.6e-54 214.5 168 59.5
Lalb_Chr22g0350101 Lupinus albus HOM05D002855 ORTHO05D004406 6.6e-54 214.5 168 58.9
THA.LOC104810821 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 6.6e-54 214.5 168 59.5
Cfa011411 Carpinus fangiana HOM05D002855 ORTHO05D004406 8.7e-54 214.2 182 56.0
Gohir.D05G099500 Gossypium hirsutum HOM05D002855 ORTHO05D004406 8.7e-54 214.2 168 58.9
SalBow3G0437 Salvia bowleyana HOM05D002855 ORTHO05D004406 8.7e-54 214.2 179 57.0
MD11G1118300 Malus domestica HOM05D002855 ORTHO05D004406 1.1e-53 213.8 168 59.5
Dinv32829 Davidia involucrata HOM05D002855 ORTHO05D004406 1.5e-53 213.4 182 57.1
Hma1.2p1_0035F.1_g021730 Hydrangea macrophylla HOM05D002855 ORTHO05D004406 1.5e-53 213.4 182 57.1
MBI14_g42162_MAGBIO Magnolia biondii HOM05D002855 ORTHO05D004406 1.5e-53 213.4 168 58.9
Medtr2g096000 Medicago truncatula HOM05D002855 ORTHO05D004406 1.5e-53 213.4 168 58.9
Ciclev10027686m.g Citrus clementina HOM05D002855 ORTHO05D004406 1.9e-53 213.0 168 58.3
Haze_23986 Corylus avellana HOM05D002855 ORTHO05D004406 1.9e-53 213.0 182 56.0
Haze_23987 Corylus avellana HOM05D002855 ORTHO05D004406 1.9e-53 213.0 182 56.0
Migut.D02157 Erythranthe guttata HOM05D002855 ORTHO05D004406 2.5e-53 212.6 168 58.9
Rhsim01G0216000 Rhododendron simsii HOM05D002855 ORTHO05D004406 2.5e-53 212.6 179 56.4
SGA_v2.0_scaffold194G40747 Striga asiatica HOM05D002855 ORTHO05D004406 2.5e-53 212.6 179 56.4
unitig_899.g14902 Utricularia gibba HOM05D002855 ORTHO05D004406 2.5e-53 212.6 168 57.7
Carub.0005s1167 Capsella rubella HOM05D002855 ORTHO05D004406 3.3e-53 212.2 168 60.1
Potri.009G026100 Populus trichocarpa HOM05D002855 ORTHO05D004406 3.3e-53 212.2 168 59.5
Atru.chr3.3777 Acer truncatum HOM05D002855 ORTHO05D004406 4.3e-53 211.8 168 58.3
AL5G24520 Arabidopsis lyrata HOM05D002855 ORTHO05D004406 4.3e-53 211.8 168 60.1
Sc12g0001880 Simmondsia chinensis HOM05D002855 ORTHO05D004406 4.3e-53 211.8 168 58.9
Thecc.09G332800 Theobroma cacao HOM05D002855 ORTHO05D004406 4.3e-53 211.8 168 58.9
HPP92_001698 Vanilla planifolia HOM05D002855 ORTHO05D004406 4.3e-53 211.8 168 58.3
CSS0016445 Camellia sinensis var. sinensis HOM05D002855 ORTHO05D004406 5.6e-53 211.5 168 59.5
CDE02G2912 Ceratophyllum demersum HOM05D002855 ORTHO05D004406 5.6e-53 211.5 168 58.3
TAR623G1741 Trochodendron aralioides HOM05D002855 ORTHO05D004406 5.6e-53 211.5 168 59.5
Gohir.A03G036400 Gossypium hirsutum HOM05D002855 ORTHO05D004406 7.3e-53 211.1 168 58.3
Gohir.D03G131800 Gossypium hirsutum HOM05D002855 ORTHO05D004406 7.3e-53 211.1 168 58.3
Gorai.003G138700 Gossypium raimondii HOM05D002855 ORTHO05D004406 7.3e-53 211.1 168 58.3
AT3G45830 Arabidopsis thaliana HOM05D002855 ORTHO05D004406 9.6e-53 210.7 168 59.5
EL10Ac7g15933 Beta vulgaris HOM05D002855 ORTHO05D004406 9.6e-53 210.7 173 57.2
TAR633G1422 Trochodendron aralioides HOM05D002855 ORTHO05D004406 1.3e-52 210.3 168 58.3
ATR0594G221 Amborella trichopoda HOM05D002855 ORTHO05D004406 2.1e-52 209.5 168 56.5
Hund18948 Selenicereus undatus HOM05D002855 ORTHO05D004406 2.1e-52 209.5 177 55.9
AUR62001859 Chenopodium quinoa HOM05D002855 ORTHO05D004406 2.8e-52 209.1 173 56.6
AUR62009654 Chenopodium quinoa HOM05D002855 ORTHO05D004406 2.8e-52 209.1 173 56.6
ClCG02G020560 Citrullus lanatus HOM05D002855 ORTHO05D004406 2.8e-52 209.1 168 57.7
MELO3C025710.2 Cucumis melo HOM05D002855 ORTHO05D004406 2.8e-52 209.1 168 57.7
CsaV3_6G022000 Cucumis sativus L. HOM05D002855 ORTHO05D004406 2.8e-52 209.1 168 57.7
Lsat_1_v5_gn_5_166940 Lactuca sativa HOM05D002855 ORTHO05D004406 3.6e-52 208.8 182 54.9
Thhalv10002373m.g Eutrema salsugineum HOM05D002855 ORTHO05D004406 4.8e-52 208.4 168 59.5
CARHR154140 Cardamine hirsuta HOM05D002855 ORTHO05D004406 8.1e-52 207.6 168 58.3
PSO384G0780 Papaver somniferum HOM05D002855 ORTHO05D004406 8.1e-52 207.6 168 56.5
PGR102G1726 Punica granatum HOM05D002855 ORTHO05D004406 8.1e-52 207.6 168 57.1
ECA248G3817 Erigeron canadensis HOM05D002855 ORTHO05D004406 1.1e-51 207.2 168 57.1
Sed0021885 Sechium edule HOM05D002855 ORTHO05D004406 1.1e-51 207.2 174 56.3
unitig_736.g22427 Utricularia gibba HOM05D002855 ORTHO05D004406 1.1e-51 207.2 168 56.5
HPP92_000643 Vanilla planifolia HOM05D002855 ORTHO05D004406 2.4e-51 206.1 168 57.1
Pp3c17_22910 Physcomitrium patens HOM05D002855 ORTHO05D004406 5.3e-51 204.9 168 55.4
THA.LOC104814856 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 5.3e-51 204.9 163 57.7
DCAR_018860 Daucus carota HOM05D002855 ORTHO05D004406 9.0e-51 204.1 182 53.8
DCAR_018861 Daucus carota HOM05D002855 ORTHO05D004406 9.0e-51 204.1 182 53.8
Mapoly0002s0042 Marchantia polymorpha HOM05D002855 ORTHO05D004406 9.0e-51 204.1 168 57.1
Actinidia14088 Actinidia chinensis HOM05D002855 ORTHO05D004406 1.2e-50 203.8 169 58.6
HanXRQChr04g0110371 Helianthus annuus HOM05D002855 ORTHO05D004406 1.2e-50 203.8 168 56.5
BcaB01g01053 Brassica carinata HOM05D002855 ORTHO05D004406 1.5e-50 203.4 168 57.1
BcaC01g01947 Brassica carinata HOM05D002855 ORTHO05D004406 2.0e-50 203.0 168 57.1
C03p70400 Brassica napus HOM05D002855 ORTHO05D004406 2.0e-50 203.0 168 57.1
BolC3t19280H Brassica oleracea HOM05D002855 ORTHO05D004406 2.0e-50 203.0 168 57.1
MBI05_g19645_MAGBIO Magnolia biondii HOM05D002855 ORTHO05D004406 2.6e-50 202.6 168 57.1
BraA06t25210Z Brassica rapa HOM05D002855 ORTHO05D004406 9.9e-50 200.7 168 56.5
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 2.9e-49 199.1 162 57.4
Thecc.05G049900 Theobroma cacao HOM05D002855 ORTHO05D004406 4.9e-49 198.4 171 56.7
Sp5g15700 Schrenkiella parvula HOM05D002855 ORTHO05D004406 6.4e-49 198.0 164 56.7
Ciclev10011193m.g Citrus clementina HOM05D002855 ORTHO05D004406 8.4e-49 197.6 171 55.0
Lj2P104T63 Lonicera japonica HOM05D002855 ORTHO05D004406 1.4e-48 196.8 168 56.5
AagrBONN_evm.TU.Sc2ySwM_228.4027 Anthoceros agrestis HOM05D002855 ORTHO05D004406 1.9e-48 196.4 168 53.0
Duzib128G1501 Durio zibethinus HOM05D002855 ORTHO05D004406 5.4e-48 194.9 171 55.6
HanXRQChr14g0429221 Helianthus annuus HOM05D002855 ORTHO05D004406 7.1e-48 194.5 160 56.2
SEGI_18775 Sequoiadendron giganteum HOM05D002855 ORTHO05D004406 7.1e-48 194.5 162 55.6
Cc06_g03300 Coffea canephora HOM05D002855 ORTHO05D004406 9.3e-48 194.1 169 55.0
Ah.08g215040 Amaranthus hybridus HOM05D002855 ORTHO05D004406 1.6e-47 193.4 150 58.7
CBR_g17672 Chara braunii HOM05D002855 ORTHO05D004406 1.8e-46 189.9 168 54.8
Os05g0117864 Oryza sativa ssp. japonica HOM05D002855 ORTHO05D004406 1.1e-45 187.2 175 52.6
COL.COLO4_10308 Corchorus olitorius HOM05D002855 ORTHO05D004406 1.5e-45 186.8 170 54.7
Zm00001eb265670 Zea mays HOM05D002855 ORTHO05D004406 1.9e-45 186.4 175 52.0
Atru.chr8.2509 Acer truncatum HOM05D002855 ORTHO05D004406 3.3e-45 185.7 167 52.1
Pp3c14_23790 Physcomitrium patens HOM05D002855 ORTHO05D004406 9.6e-45 184.1 160 52.5
Zm00001eb355300 Zea mays HOM05D002855 ORTHO05D004406 1.3e-44 183.7 175 50.9
RcHm_v2.0_Chr3g0468071 Rosa chinensis HOM05D000001 ORTHO05D009676 2.8e-44 182.6 173 56.1
PSO832G3558 Papaver somniferum HOM05D002855 ORTHO05D004406 1.4e-43 180.3 168 51.8
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 1.8e-43 179.9 175 50.3
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 1.8e-43 179.9 175 50.3
Sc01g0003750 Simmondsia chinensis HOM05D002855 ORTHO05D004406 1.8e-43 179.9 177 52.0
Actinidia00807 Actinidia chinensis HOM05D002855 ORTHO05D004406 1.2e-42 177.2 131 59.5
RhsimUnG0121200 Rhododendron simsii HOM05D002855 ORTHO05D004406 4.5e-42 175.3 169 50.3
FvH4_6g14860 Fragaria vesca HOM05D002855 ORTHO05D035540 5.8e-42 174.9 158 55.7
FvH4_6g14850 Fragaria vesca HOM05D002855 ORTHO05D004406 7.1e-40 167.9 173 50.3
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 9.3e-40 167.5 173 50.3
FAN09G2794 Fragaria x ananassa HOM05D002855 ORTHO05D035540 2.3e-38 162.9 158 53.2
Actinidia37270 Actinidia chinensis HOM05D002855 ORTHO05D004406 2.4e-35 152.9 131 58.0
Prupe.6G245300 Prunus persica HOM05D002855 ORTHO05D004406 1.5e-34 150.2 138 51.4
FAN09G4588 Fragaria x ananassa HOM05D000001 ORTHO05D009676 3.8e-33 145.6 173 47.4
CSS0021829 Camellia sinensis var. sinensis HOM05D002855 ORTHO05D004406 6.5e-33 144.8 120 61.7
Actinidia07087 Actinidia chinensis HOM05D002855 ORTHO05D004406 4.2e-32 142.1 168 44.6
SMO118G0514 Selaginella moellendorffii HOM05D002855 ORTHO05D004406 4.2e-32 142.1 116 59.5
Dinv37233 Davidia involucrata HOM05D002855 ORTHO05D004406 1.1e-29 134.0 97 60.8
Gorai.001G248600 Gossypium raimondii HOM05D002855 ORTHO05D004406 2.0e-21 106.7 139 43.9
Gohir.D13G096325 Gossypium hirsutum HOM05D002855 ORTHO05D004406 6.3e-20 101.7 139 42.4
Lj2E1045T0 Lonicera japonica HOM05D002855 ORTHO05D004406 1.4e-19 100.5 71 57.7
Actinidia03767 Actinidia chinensis HOM05D002855 ORTHO05D004406 2.5e-16 89.7 108 41.7
vmacro20088 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 2.7e-15 86.3 156 34.0
CDE09G0123 Ceratophyllum demersum HOM05D002855 ORTHO05D004406 2.3e-14 83.2 168 33.3
FAN05G2826 Fragaria x ananassa HOM05D000001 ORTHO05D009676 9.7e-13 77.8 66 51.5


User provided reference genes

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