Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g015670 Solanum pennellii HOM05D002855 ORTHO05D004406 1.1e-95 353.2 174 100.0
Sopen06g015680 Solanum pennellii HOM05D002855 ORTHO05D004406 1.1e-95 353.2 174 100.0
Sopen06g015700 Solanum pennellii HOM05D002855 ORTHO05D004406 5.6e-87 324.3 173 93.1
Sopen10g033890 Solanum pennellii HOM05D002855 ORTHO05D004406 6.2e-86 320.9 173 90.8
Sopen10g033920 Solanum pennellii HOM05D002855 ORTHO05D004406 1.8e-85 319.3 173 90.8
PGSC0003DMG402010988 Solanum tuberosum HOM05D002855 ORTHO05D004406 3.2e-82 308.5 176 87.5
Sopen06g015720 Solanum pennellii HOM05D002855 ORTHO05D004406 5.5e-74 281.2 153 90.8
Sopen10g033910 Solanum pennellii HOM05D002855 ORTHO05D004406 5.3e-69 264.6 176 75.0
Sopen10g033900 Solanum pennellii HOM05D002855 ORTHO05D004406 1.1e-63 246.9 285 51.2
Sopen06g015690 Solanum pennellii HOM05D002855 ORTHO05D004406 2.7e-57 225.7 145 75.2
Nitab4.5_0011917g0020 Nicotiana tabacum HOM05D002855 ORTHO05D004406 2.0e-47 193.0 143 64.3
Sabra16G0140100 Salix brachista HOM05D002855 ORTHO05D004406 3.1e-45 185.7 143 62.9
Psat5g281800 Pisum sativum HOM05D002855 ORTHO05D004406 1.2e-44 183.7 143 62.2
Potri.001G233800 Populus trichocarpa HOM05D002855 ORTHO05D004406 1.2e-44 183.7 143 62.2
MD03G1106200 Malus domestica HOM05D002855 ORTHO05D004406 1.6e-44 183.3 143 61.5
Prupe.6G088700 Prunus persica HOM05D002855 ORTHO05D004406 1.6e-44 183.3 143 61.5
Duzib168G0993 Durio zibethinus HOM05D002855 ORTHO05D004406 2.0e-44 183.0 140 62.9
arahy.Tifrunner.gnm1.ann1.3PXT9K Arachis hypogaea HOM05D002855 ORTHO05D004406 2.6e-44 182.6 143 60.8
arahy.Tifrunner.gnm1.ann1.R78DWG Arachis hypogaea HOM05D002855 ORTHO05D004406 2.6e-44 182.6 143 60.8
Ca_01364_v3 Cicer arietinum L. HOM05D002855 ORTHO05D004406 2.6e-44 182.6 143 61.5
Lj3g0004926 Lotus japonicus HOM05D002855 ORTHO05D004406 2.6e-44 182.6 143 60.8
TWI75G0055 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 2.6e-44 182.6 143 61.5
TWI79G0463 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 2.6e-44 182.6 143 61.5
Peaxi162Scf00472g00082 Petunia axillaris HOM05D002855 ORTHO05D004406 3.5e-44 182.2 143 60.1
QL01p035172 Quercus lobata HOM05D002855 ORTHO05D004406 3.5e-44 182.2 143 61.5
RcHm_v2.0_Chr5g0062031 Rosa chinensis HOM05D002855 ORTHO05D004406 3.5e-44 182.2 145 60.0
Glyma.15G043500 Glycine max HOM05D002855 ORTHO05D004406 4.5e-44 181.8 143 60.8
Lalb_Chr22g0350071 Lupinus albus HOM05D002855 ORTHO05D004406 4.5e-44 181.8 143 60.8
CiPaw.13G102800 Carya illinoinensis HOM05D002855 ORTHO05D004406 5.9e-44 181.4 143 60.8
CiPaw.13G103000 Carya illinoinensis HOM05D002855 ORTHO05D004406 5.9e-44 181.4 143 60.8
Migut.N02644 Erythranthe guttata HOM05D002855 ORTHO05D004406 5.9e-44 181.4 143 59.4
Glyma.13G330500 Glycine max HOM05D002855 ORTHO05D004406 5.9e-44 181.4 143 60.8
TPR.G11598 Trifolium pratense HOM05D002855 ORTHO05D004406 5.9e-44 181.4 143 60.8
MSTRG.18613 Avicennia marina HOM05D002855 ORTHO05D004406 7.7e-44 181.0 143 60.8
CANSAT54G2256 Cannabis sativa HOM05D002855 ORTHO05D004406 7.7e-44 181.0 143 60.8
Dinv32829 Davidia involucrata HOM05D002855 ORTHO05D004406 7.7e-44 181.0 143 60.8
Eucgr.B02434 Eucalyptus grandis HOM05D002855 ORTHO05D004406 7.7e-44 181.0 143 60.8
Gohir.A05G099600 Gossypium hirsutum HOM05D002855 ORTHO05D004406 7.7e-44 181.0 143 60.8
Gorai.009G103400 Gossypium raimondii HOM05D002855 ORTHO05D004406 7.7e-44 181.0 143 60.8
Oeu041006.2 Olea europaea HOM05D002855 ORTHO05D004406 7.7e-44 181.0 143 61.5
PSO384G0780 Papaver somniferum HOM05D002855 ORTHO05D004406 7.7e-44 181.0 143 60.8
Lalb_Chr22g0350101 Lupinus albus HOM05D002855 ORTHO05D004406 1.0e-43 180.6 143 60.1
Medtr2g096000 Medicago truncatula HOM05D002855 ORTHO05D004406 1.0e-43 180.6 143 60.8
TAR633G1422 Trochodendron aralioides HOM05D002855 ORTHO05D004406 1.0e-43 180.6 143 61.5
Ciclev10027686m.g Citrus clementina HOM05D002855 ORTHO05D004406 1.3e-43 180.3 143 60.1
Dinv18704 Davidia involucrata HOM05D002855 ORTHO05D004406 1.3e-43 180.3 143 60.1
Nn2g10571 Nelumbo nucifera HOM05D002855 ORTHO05D004406 1.3e-43 180.3 143 60.8
SHI05981 Sapria himalayana HOM05D002855 ORTHO05D004406 1.3e-43 180.3 145 60.7
Thecc.09G332800 Theobroma cacao HOM05D002855 ORTHO05D004406 1.3e-43 180.3 143 61.5
vmacro14496 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 1.3e-43 180.3 143 60.8
COL.COLO4_18410 Corchorus olitorius HOM05D002855 ORTHO05D004406 1.7e-43 179.9 143 60.1
Gohir.D05G099500 Gossypium hirsutum HOM05D002855 ORTHO05D004406 1.7e-43 179.9 143 60.1
MD11G1118300 Malus domestica HOM05D002855 ORTHO05D004406 1.7e-43 179.9 143 60.8
Manes.11G137500 Manihot esculenta HOM05D002855 ORTHO05D004406 1.7e-43 179.9 143 60.8
Nn2g12814 Nelumbo nucifera HOM05D002855 ORTHO05D004406 1.7e-43 179.9 143 60.8
Cfa011411 Carpinus fangiana HOM05D002855 ORTHO05D004406 2.2e-43 179.5 145 59.3
Cc01_g11990 Coffea canephora HOM05D002855 ORTHO05D004406 2.2e-43 179.5 143 59.4
Hma1.2p1_0746F.1_g212280 Hydrangea macrophylla HOM05D002855 ORTHO05D004406 2.2e-43 179.5 143 61.5
Manes.04G028200 Manihot esculenta HOM05D002855 ORTHO05D004406 2.2e-43 179.5 143 60.1
Nitab4.5_0000202g0400 Nicotiana tabacum HOM05D002855 ORTHO05D004406 2.2e-43 179.5 140 62.9
Phvul.L002003 Phaseolus vulgaris HOM05D002855 ORTHO05D004406 2.2e-43 179.5 143 61.5
Sabra09G0017300 Salix brachista HOM05D002855 ORTHO05D004406 2.2e-43 179.5 143 60.8
SalBow3G0437 Salvia bowleyana HOM05D002855 ORTHO05D004406 2.2e-43 179.5 143 60.1
VMungo1080G0735 Vigna mungo HOM05D002855 ORTHO05D004406 2.2e-43 179.5 143 61.5
Atru.chr3.3777 Acer truncatum HOM05D002855 ORTHO05D004406 2.9e-43 179.1 143 60.1
Duzib170G0969 Durio zibethinus HOM05D002855 ORTHO05D004406 2.9e-43 179.1 143 60.1
Potri.009G026100 Populus trichocarpa HOM05D002855 ORTHO05D004406 2.9e-43 179.1 143 61.5
Cpa.g.sc139.9 Carica papaya HOM05D002855 ORTHO05D004406 3.8e-43 178.7 143 60.1
PGR102G1726 Punica granatum HOM05D002855 ORTHO05D004406 3.8e-43 178.7 145 60.0
Rhsim01G0223400 Rhododendron simsii HOM05D002855 ORTHO05D004406 3.8e-43 178.7 143 59.4
FvH4_3g34430 Fragaria vesca HOM05D002855 ORTHO05D004406 5.0e-43 178.3 143 59.4
FAN11G1910 Fragaria x ananassa HOM05D002855 ORTHO05D004406 5.0e-43 178.3 145 58.6
FAN16G1875 Fragaria x ananassa HOM05D002855 ORTHO05D004406 5.0e-43 178.3 145 58.6
FAN21G1667 Fragaria x ananassa HOM05D002855 ORTHO05D004406 5.0e-43 178.3 145 58.6
FAN25G2944 Fragaria x ananassa HOM05D002855 ORTHO05D004406 5.0e-43 178.3 145 58.6
TAR369G1034 Trochodendron aralioides HOM05D002855 ORTHO05D004406 5.0e-43 178.3 143 59.4
Migut.D02157 Erythranthe guttata HOM05D002855 ORTHO05D004406 6.5e-43 177.9 143 59.4
MBI14_g42162_MAGBIO Magnolia biondii HOM05D002855 ORTHO05D004406 1.1e-42 177.2 143 59.4
Gohir.A03G036400 Gossypium hirsutum HOM05D002855 ORTHO05D004406 1.5e-42 176.8 143 59.4
Gohir.D03G131800 Gossypium hirsutum HOM05D002855 ORTHO05D004406 1.5e-42 176.8 143 59.4
Gorai.003G138700 Gossypium raimondii HOM05D002855 ORTHO05D004406 1.5e-42 176.8 143 59.4
Haze_23986 Corylus avellana HOM05D002855 ORTHO05D004406 1.9e-42 176.4 143 58.7
Haze_23987 Corylus avellana HOM05D002855 ORTHO05D004406 1.9e-42 176.4 143 58.7
Peaxi162Scf00836g00219 Petunia axillaris HOM05D002855 ORTHO05D004406 1.9e-42 176.4 145 59.3
unitig_899.g14902 Utricularia gibba HOM05D002855 ORTHO05D004406 1.9e-42 176.4 145 57.9
Aqoxy4G03112 Aquilegia oxysepala HOM05D002855 ORTHO05D004406 3.2e-42 175.6 143 60.1
Gohir.A08G000105 Gossypium hirsutum HOM05D002855 ORTHO05D004406 3.2e-42 175.6 143 60.1
Sc12g0001880 Simmondsia chinensis HOM05D002855 ORTHO05D004406 3.2e-42 175.6 143 60.8
THA.LOC104810821 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 3.2e-42 175.6 143 60.8
ClCG02G020560 Citrullus lanatus HOM05D002855 ORTHO05D004406 4.2e-42 175.3 145 57.9
CsaV3_6G022000 Cucumis sativus L. HOM05D002855 ORTHO05D004406 4.2e-42 175.3 145 57.9
Gohir.D08G009200 Gossypium hirsutum HOM05D002855 ORTHO05D004406 4.2e-42 175.3 143 60.1
Gorai.004G002400 Gossypium raimondii HOM05D002855 ORTHO05D004406 4.2e-42 175.3 143 60.1
Hma1.2p1_0035F.1_g021730 Hydrangea macrophylla HOM05D002855 ORTHO05D004406 4.2e-42 175.3 143 58.7
MELO3C025710.2 Cucumis melo HOM05D002855 ORTHO05D004406 5.5e-42 174.9 145 57.9
Rhsim01G0216000 Rhododendron simsii HOM05D002855 ORTHO05D004406 9.4e-42 174.1 143 58.0
EL10Ac7g15933 Beta vulgaris HOM05D002855 ORTHO05D004406 1.2e-41 173.7 143 58.7
AUR62001859 Chenopodium quinoa HOM05D002855 ORTHO05D004406 1.2e-41 173.7 143 58.7
AUR62009654 Chenopodium quinoa HOM05D002855 ORTHO05D004406 1.2e-41 173.7 143 58.7
Nitab4.5_0002380g0080 Nicotiana tabacum HOM05D002855 ORTHO05D004406 1.2e-41 173.7 143 58.7
Nitab4.5_0003784g0030 Nicotiana tabacum HOM05D002855 ORTHO05D004406 1.2e-41 173.7 143 58.7
Solyc11g072810.2 Solanum lycopersicum HOM05D002855 ORTHO05D004406 1.2e-41 173.7 143 58.7
Sopen11g030480 Solanum pennellii HOM05D002855 ORTHO05D004406 1.2e-41 173.7 143 58.7
PGSC0003DMG400015522 Solanum tuberosum HOM05D002855 ORTHO05D004406 1.2e-41 173.7 143 58.7
DCAR_018861 Daucus carota HOM05D002855 ORTHO05D004406 1.6e-41 173.3 143 57.3
SGA_v2.0_scaffold194G40747 Striga asiatica HOM05D002855 ORTHO05D004406 1.6e-41 173.3 143 58.7
ATR0594G221 Amborella trichopoda HOM05D002855 ORTHO05D004406 2.1e-41 172.9 143 58.0
DCAR_018860 Daucus carota HOM05D002855 ORTHO05D004406 2.1e-41 172.9 143 57.3
TAR623G1741 Trochodendron aralioides HOM05D002855 ORTHO05D004406 2.7e-41 172.6 143 58.7
CSS0016445 Camellia sinensis var. sinensis HOM05D002855 ORTHO05D004406 4.7e-41 171.8 140 59.3
CAN.G84.3 Capsicum annuum HOM05D002855 ORTHO05D004406 4.7e-41 171.8 143 58.0
Lsat_1_v5_gn_5_166940 Lactuca sativa HOM05D002855 ORTHO05D004406 4.7e-41 171.8 143 59.4
SEGI_18775 Sequoiadendron giganteum HOM05D002855 ORTHO05D004406 4.7e-41 171.8 143 58.7
MBI05_g19645_MAGBIO Magnolia biondii HOM05D002855 ORTHO05D004406 6.1e-41 171.4 145 58.6
THA.LOC104814856 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 6.1e-41 171.4 143 58.0
AL5G24520 Arabidopsis lyrata HOM05D002855 ORTHO05D004406 8.0e-41 171.0 143 60.1
AT3G45830 Arabidopsis thaliana HOM05D002855 ORTHO05D004406 8.0e-41 171.0 143 60.1
unitig_736.g22427 Utricularia gibba HOM05D002855 ORTHO05D004406 8.0e-41 171.0 143 56.6
Sed0021885 Sechium edule HOM05D002855 ORTHO05D004406 1.0e-40 170.6 145 55.9
Carub.0005s1167 Capsella rubella HOM05D002855 ORTHO05D004406 1.8e-40 169.9 143 59.4
Hund18948 Selenicereus undatus HOM05D002855 ORTHO05D004406 1.8e-40 169.9 143 58.0
ECA248G3817 Erigeron canadensis HOM05D002855 ORTHO05D004406 5.2e-40 168.3 146 56.8
CDE02G2912 Ceratophyllum demersum HOM05D002855 ORTHO05D004406 1.2e-39 167.2 143 57.3
HanXRQChr14g0429221 Helianthus annuus HOM05D002855 ORTHO05D004406 1.5e-39 166.8 143 57.3
HanXRQChr04g0110371 Helianthus annuus HOM05D002855 ORTHO05D004406 2.0e-39 166.4 143 58.0
Cc06_g03300 Coffea canephora HOM05D002855 ORTHO05D004406 2.6e-39 166.0 141 57.4
Mapoly0002s0042 Marchantia polymorpha HOM05D002855 ORTHO05D004406 2.6e-39 166.0 145 57.9
HPP92_001698 Vanilla planifolia HOM05D002855 ORTHO05D004406 2.6e-39 166.0 140 57.1
Thhalv10002373m.g Eutrema salsugineum HOM05D002855 ORTHO05D004406 3.3e-39 165.6 143 58.0
Pp3c17_22910 Physcomitrium patens HOM05D002855 ORTHO05D004406 3.3e-39 165.6 143 57.3
CARHR154140 Cardamine hirsuta HOM05D002855 ORTHO05D004406 4.4e-39 165.2 143 57.3
Actinidia14088 Actinidia chinensis HOM05D002855 ORTHO05D004406 9.7e-39 164.1 144 55.6
HPP92_000643 Vanilla planifolia HOM05D002855 ORTHO05D004406 9.7e-39 164.1 140 56.4
Ciclev10011193m.g Citrus clementina HOM05D002855 ORTHO05D004406 1.7e-38 163.3 146 54.8
Sp5g15700 Schrenkiella parvula HOM05D002855 ORTHO05D004406 1.7e-38 163.3 140 58.6
Ah.08g215040 Amaranthus hybridus HOM05D002855 ORTHO05D004406 8.2e-38 161.0 121 61.2
BcaB01g01053 Brassica carinata HOM05D002855 ORTHO05D004406 1.1e-37 160.6 145 55.2
BcaC01g01947 Brassica carinata HOM05D002855 ORTHO05D004406 1.4e-37 160.2 143 55.9
C03p70400 Brassica napus HOM05D002855 ORTHO05D004406 1.4e-37 160.2 143 55.9
BolC3t19280H Brassica oleracea HOM05D002855 ORTHO05D004406 1.4e-37 160.2 143 55.9
BraA06t25210Z Brassica rapa HOM05D002855 ORTHO05D004406 1.4e-37 160.2 143 55.9
Lj2P104T63 Lonicera japonica HOM05D002855 ORTHO05D004406 2.4e-37 159.5 147 54.4
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 2.4e-37 159.5 143 53.8
PSO832G3558 Papaver somniferum HOM05D002855 ORTHO05D004406 5.3e-37 158.3 153 53.6
AagrBONN_evm.TU.Sc2ySwM_228.4027 Anthoceros agrestis HOM05D002855 ORTHO05D004406 2.0e-36 156.4 143 53.8
Actinidia37270 Actinidia chinensis HOM05D002855 ORTHO05D004406 4.5e-36 155.2 135 57.0
Atru.chr8.2509 Acer truncatum HOM05D002855 ORTHO05D004406 1.3e-35 153.7 146 52.7
Duzib128G1501 Durio zibethinus HOM05D002855 ORTHO05D004406 1.3e-35 153.7 147 51.7
Thecc.05G049900 Theobroma cacao HOM05D002855 ORTHO05D004406 1.7e-35 153.3 147 52.4
CBR_g17672 Chara braunii HOM05D002855 ORTHO05D004406 3.8e-35 152.1 140 55.0
Pp3c14_23790 Physcomitrium patens HOM05D002855 ORTHO05D004406 5.0e-35 151.8 143 53.1
COL.COLO4_10308 Corchorus olitorius HOM05D002855 ORTHO05D004406 3.2e-34 149.1 149 51.7
Sc01g0003750 Simmondsia chinensis HOM05D002855 ORTHO05D004406 7.2e-34 147.9 140 52.9
Os05g0117864 Oryza sativa ssp. japonica HOM05D002855 ORTHO05D004406 2.1e-33 146.4 145 51.7
Prupe.6G245300 Prunus persica HOM05D002855 ORTHO05D004406 2.1e-33 146.4 124 57.3
RcHm_v2.0_Chr3g0468071 Rosa chinensis HOM05D000001 ORTHO05D009676 2.1e-33 146.4 155 52.9
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 2.7e-33 146.0 127 55.1
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 2.7e-33 146.0 127 55.1
Actinidia00807 Actinidia chinensis HOM05D002855 ORTHO05D004406 6.1e-33 144.8 102 63.7
CSS0021829 Camellia sinensis var. sinensis HOM05D002855 ORTHO05D004406 6.1e-33 144.8 117 61.5
Zm00001eb265670 Zea mays HOM05D002855 ORTHO05D004406 3.0e-32 142.5 150 48.7
RhsimUnG0121200 Rhododendron simsii HOM05D002855 ORTHO05D004406 1.2e-31 140.6 140 49.3
Zm00001eb355300 Zea mays HOM05D002855 ORTHO05D004406 1.5e-31 140.2 150 47.3
FvH4_6g14860 Fragaria vesca HOM05D002855 ORTHO05D035540 3.4e-31 139.0 128 53.1
SMO118G0514 Selaginella moellendorffii HOM05D002855 ORTHO05D004406 8.3e-30 134.4 121 56.2
FvH4_6g14850 Fragaria vesca HOM05D002855 ORTHO05D004406 2.4e-29 132.9 154 47.4
FAN09G2794 Fragaria x ananassa HOM05D002855 ORTHO05D035540 1.2e-28 130.6 128 50.8
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 1.2e-28 130.6 154 46.8
FAN09G4588 Fragaria x ananassa HOM05D000001 ORTHO05D009676 9.8e-23 110.9 153 43.8
Actinidia07087 Actinidia chinensis HOM05D002855 ORTHO05D004406 1.8e-21 106.7 140 45.0
Dinv37233 Davidia involucrata HOM05D002855 ORTHO05D004406 2.4e-21 106.3 69 69.6
Gorai.001G248600 Gossypium raimondii HOM05D002855 ORTHO05D004406 5.2e-16 88.6 99 48.5
Gohir.D13G096325 Gossypium hirsutum HOM05D002855 ORTHO05D004406 6.4e-14 81.6 99 45.5
Lj2E1045T0 Lonicera japonica HOM05D002855 ORTHO05D004406 2.5e-10 69.7 43 69.8
vmacro20088 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 1.5e-07 60.5 49 53.1
Actinidia03767 Actinidia chinensis HOM05D002855 ORTHO05D004406 9.8e-07 57.8 92 34.8
CDE09G0123 Ceratophyllum demersum HOM05D002855 ORTHO05D004406 2.9e-06 56.2 50 58.0
FAN05G2826 Fragaria x ananassa HOM05D000001 ORTHO05D009676 3.7e-06 55.8 38 60.5


User provided reference genes

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