Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 1.1e-122 443.4 220 100.0
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 4.9e-120 434.5 220 98.2
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 2.4e-106 389.0 217 89.9
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 1.1e-90 337.0 218 78.4
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 2.0e-89 332.8 225 76.9
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 1.9e-71 273.1 228 68.0
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 3.9e-69 265.4 194 73.2
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 5.7e-68 261.5 221 67.0
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 3.6e-54 215.7 222 56.8
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 6.3e-51 204.9 172 69.2
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 2.9e-48 196.1 230 50.9
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.9e-47 193.4 227 51.1
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 5.5e-47 191.8 185 56.2
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 4.4e-44 182.2 151 63.6
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 5.7e-44 181.8 220 48.6
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 9.7e-44 181.0 193 54.9
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 1.7e-43 180.3 175 53.1
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 8.2e-43 177.9 154 63.0
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 1.2e-41 174.1 195 47.7
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 7.7e-41 171.4 205 46.3
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 1.0e-40 171.0 220 46.4
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.7e-40 170.2 221 43.0
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 3.8e-40 169.1 211 47.4
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 1.9e-39 166.8 197 49.7
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 7.2e-39 164.9 192 46.9
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 9.4e-39 164.5 157 54.8
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 9.4e-39 164.5 211 46.0
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 1.2e-38 164.1 207 41.5
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 2.7e-38 162.9 164 53.0
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 6.1e-38 161.8 154 53.9
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 6.1e-38 161.8 182 50.0
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 1.8e-37 160.2 193 45.1
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 4.0e-37 159.1 154 53.9
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 4.0e-37 159.1 154 53.9
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 4.0e-37 159.1 177 48.6
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 6.8e-37 158.3 158 52.5
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 8.8e-37 157.9 151 55.0
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 1.5e-36 157.1 221 44.3
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 1.5e-36 157.1 182 50.0
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 1.5e-36 157.1 154 56.5
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 2.6e-36 156.4 180 46.1
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 2.6e-36 156.4 180 46.1
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 2.6e-36 156.4 176 50.0
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 2.6e-36 156.4 168 51.8
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 3.4e-36 156.0 181 45.9
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 3.4e-36 156.0 153 53.6
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 4.4e-36 155.6 152 49.3
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 4.4e-36 155.6 160 49.4
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 4.4e-36 155.6 152 49.3
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 4.4e-36 155.6 160 49.4
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 4.4e-36 155.6 151 53.0
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 7.5e-36 154.8 160 49.4
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 7.5e-36 154.8 160 49.4
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 1.3e-35 154.1 192 46.4
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.7e-35 153.7 180 47.2
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 2.2e-35 153.3 179 48.0
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 2.2e-35 153.3 182 47.3
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 2.8e-35 152.9 159 52.2
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 2.8e-35 152.9 194 46.9
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 2.8e-35 152.9 151 52.3
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 3.7e-35 152.5 160 51.9
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 4.8e-35 152.1 232 42.2
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 4.8e-35 152.1 232 42.2
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 6.3e-35 151.8 183 47.5
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.8e-34 150.2 210 40.5
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 2.4e-34 149.8 146 52.7
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 3.1e-34 149.4 225 41.8
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 3.1e-34 149.4 172 48.3
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 3.1e-34 149.4 157 47.8
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 4.1e-34 149.1 167 47.3
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 5.4e-34 148.7 155 46.5
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 7.0e-34 148.3 151 51.0
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 2.0e-33 146.7 202 39.1
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 2.0e-33 146.7 202 39.1
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 2.0e-33 146.7 165 44.2
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 2.7e-33 146.4 217 39.2
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 4.5e-33 145.6 152 52.0
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 5.9e-33 145.2 204 39.7
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 5.9e-33 145.2 168 47.0
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 7.7e-33 144.8 208 38.5
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 7.7e-33 144.8 216 41.2
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 7.7e-33 144.8 208 39.9
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 1.0e-32 144.4 200 42.0
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.3e-32 144.1 172 45.9
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 1.3e-32 144.1 151 48.3
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 1.7e-32 143.7 192 46.4
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 2.2e-32 143.3 202 38.1
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 2.2e-32 143.3 159 46.5
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 3.8e-32 142.5 184 44.0
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 6.5e-32 141.7 155 46.5
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 6.5e-32 141.7 184 44.0
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 1.5e-31 140.6 164 43.3
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 2.5e-31 139.8 172 45.3
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 2.5e-31 139.8 183 44.8
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 3.2e-31 139.4 193 43.5
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 3.2e-31 139.4 215 38.6
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 4.2e-31 139.0 204 38.2
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 4.2e-31 139.0 202 39.1
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 4.2e-31 139.0 202 39.1
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 5.5e-31 138.7 219 37.4
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 2.8e-30 136.3 151 47.0
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 3.6e-30 136.0 153 45.1
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 4.7e-30 135.6 154 44.8
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 4.7e-30 135.6 209 38.3
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 6.8e-29 131.7 187 44.4
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.5e-28 130.6 137 51.8
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 4.4e-28 129.0 159 50.9
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 5.7e-28 128.6 170 42.9
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 7.5e-28 128.3 177 37.9
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 9.8e-28 127.9 201 37.3
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 2.2e-27 126.7 184 41.3
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 2.2e-27 126.7 169 42.0
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 2.2e-27 126.7 167 41.9
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 3.7e-27 125.9 176 47.7
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 4.9e-27 125.6 143 51.7
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 8.3e-27 124.8 161 39.1
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.8e-26 123.6 149 47.7
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 2.4e-26 123.2 161 43.5
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 5.4e-26 122.1 171 40.4
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 5.4e-26 122.1 155 49.7
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 5.4e-26 122.1 154 45.5
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 5.4e-26 122.1 181 39.8
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 7.0e-26 121.7 171 40.4
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 9.2e-26 121.3 229 37.1
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 9.2e-26 121.3 178 39.9
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 1.6e-25 120.6 223 34.1
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.0e-25 120.2 171 40.4
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 5.9e-25 118.6 177 40.7
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 1.0e-24 117.9 183 39.3
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.3e-24 116.7 129 45.7
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 3.8e-24 115.9 190 39.5
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 3.8e-24 115.9 190 39.5
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 5.0e-24 115.5 168 41.7
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 6.6e-24 115.2 169 37.9
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 3.3e-23 112.8 227 34.4
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 3.3e-23 112.8 169 37.9
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 4.3e-23 112.5 177 35.6
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.3e-23 112.5 125 46.4
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 9.5e-23 111.3 154 39.0
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 1.6e-22 110.5 125 46.4
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 1.6e-22 110.5 159 37.1
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 4.7e-22 109.0 161 37.9
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 6.1e-22 108.6 173 38.7
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 1.0e-21 107.8 196 36.7
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 1.0e-21 107.8 146 42.5
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 2.3e-21 106.7 178 38.2
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 6.8e-21 105.1 162 42.0
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 9.8e-20 101.3 90 57.8
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 2.9e-19 99.8 183 35.0
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 3.7e-19 99.4 179 35.2
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 3.2e-18 96.3 114 55.3
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 9.2e-18 94.7 196 33.7
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 2.0e-17 93.6 197 33.0
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 3.0e-16 89.7 150 36.0
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 1.1e-15 87.8 180 32.8
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 1.6e-14 84.0 187 30.5
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 1.8e-13 80.5 164 29.9
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 6.8e-13 78.6 163 30.7
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 8.9e-13 78.2 124 34.7
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 1.2e-12 77.8 64 57.8
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 4.1e-10 69.3 105 38.1
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 1.0e-08 64.7 123 36.6
Pp3c10_16350 Physcomitrium patens HOM05D004173 ORTHO05D004885 1.0e-08 64.7 144 34.0
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 1.3e-08 64.3 72 48.6
ECA233G6175 Erigeron canadensis HOM05D004173 ORTHO05D004885 1.9e-07 60.5 117 39.3


User provided reference genes

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