Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 1.9e-187 659.1 345 100.0
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 2.1e-186 655.6 345 99.1
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 3.0e-180 635.2 345 95.9
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 1.8e-161 572.8 324 90.7
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 2.5e-155 552.4 345 82.3
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 2.8e-154 548.9 345 81.7
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 8.1e-154 547.4 345 81.2
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 5.3e-153 544.7 345 81.7
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 2.4e-150 535.8 345 80.0
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 4.2e-150 535.0 345 80.9
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 5.4e-150 534.6 345 79.7
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 7.1e-150 534.3 345 80.6
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 3.5e-149 531.9 345 78.3
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 4.6e-149 531.6 347 79.0
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 7.9e-149 530.8 345 80.3
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 1.3e-148 530.0 345 78.0
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 1.8e-148 529.6 345 79.1
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 3.0e-148 528.9 344 78.2
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 1.1e-147 526.9 346 79.5
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 2.5e-147 525.8 346 78.9
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 3.3e-147 525.4 347 79.3
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 3.3e-147 525.4 345 78.8
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 3.3e-147 525.4 345 78.8
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 5.6e-147 524.6 345 78.8
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 9.6e-147 523.9 392 72.4
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 9.6e-147 523.9 348 79.0
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 3.6e-146 521.9 345 76.5
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 9.0e-145 517.3 344 78.5
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 1.2e-144 516.9 346 77.2
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 1.5e-144 516.5 345 76.8
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 2.0e-144 516.2 345 76.5
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 2.6e-144 515.8 343 76.1
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 2.6e-144 515.8 345 75.9
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 4.5e-144 515.0 345 77.1
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 4.5e-144 515.0 345 77.1
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 1.3e-143 513.5 345 77.4
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 2.2e-143 512.7 345 76.8
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 3.8e-143 511.9 345 77.1
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 4.9e-143 511.5 345 78.6
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 3.2e-142 508.8 345 74.5
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 4.2e-142 508.4 345 74.5
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 4.2e-142 508.4 345 76.2
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 5.5e-142 508.1 346 75.4
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 9.3e-142 507.3 343 73.8
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 2.1e-141 506.1 345 76.2
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 2.7e-141 505.8 344 76.5
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 2.7e-141 505.8 345 74.5
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 2.7e-141 505.8 345 76.2
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 3.5e-141 505.4 346 75.1
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 4.6e-141 505.0 367 74.4
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 4.6e-141 505.0 345 75.4
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.0e-140 503.8 345 74.2
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 1.0e-140 503.8 345 74.5
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.3e-140 503.4 345 73.9
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 1.3e-140 503.4 345 74.5
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 1.3e-140 503.4 347 75.5
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 3.0e-140 502.3 343 73.5
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 8.7e-140 500.7 343 72.9
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 8.7e-140 500.7 350 75.4
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 1.1e-139 500.4 343 73.2
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 1.1e-139 500.4 343 73.2
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 1.1e-139 500.4 343 73.2
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 2.5e-139 499.2 347 75.2
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 2.5e-139 499.2 345 75.9
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 3.3e-139 498.8 337 75.7
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 3.3e-139 498.8 343 72.9
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 3.3e-139 498.8 343 72.9
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 3.3e-139 498.8 343 72.9
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 3.3e-139 498.8 343 73.2
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 4.3e-139 498.4 343 72.9
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 5.6e-139 498.0 343 73.8
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 7.4e-139 497.7 345 74.8
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 1.6e-138 496.5 336 74.1
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 2.1e-138 496.1 343 72.6
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 2.8e-138 495.7 345 73.6
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 3.7e-138 495.4 343 72.3
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 6.2e-138 494.6 343 72.3
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 1.1e-137 493.8 351 73.8
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 4.0e-137 491.9 355 70.4
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 2.0e-136 489.6 343 74.1
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 7.6e-136 487.6 355 69.9
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 3.8e-135 485.3 345 73.3
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 3.8e-135 485.3 358 71.2
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 4.9e-135 485.0 345 71.3
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 8.4e-135 484.2 345 72.5
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 7.4e-131 471.1 309 77.0
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.3e-130 470.3 313 79.2
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 2.8e-130 469.2 308 80.2
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 4.8e-130 468.4 337 71.8
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 6.3e-130 468.0 339 69.3
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 1.4e-129 466.8 345 71.9
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 3.4e-128 462.2 336 70.8
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 1.0e-127 460.7 415 61.9
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 5.0e-127 458.4 336 72.0
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 1.3e-124 450.3 295 80.0
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 5.1e-124 448.4 272 82.0
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 6.7e-124 448.0 397 62.7
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 1.9e-123 446.4 308 74.4
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 1.6e-122 443.4 272 80.9
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 1.5e-120 436.8 345 68.4
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 1.0e-119 434.1 345 68.4
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 5.5e-118 428.3 343 67.1
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 9.1e-113 411.0 328 70.1
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 8.5e-111 404.4 418 56.5
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.4e-110 403.7 345 64.1
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 1.6e-109 400.2 435 58.4
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 1.6e-109 400.2 292 73.6
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 2.1e-109 399.8 345 63.5
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 6.3e-106 388.3 344 65.4
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 1.6e-104 383.6 222 86.0
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 1.5e-102 377.1 343 60.9
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 6.7e-100 368.2 384 54.2
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 4.8e-98 362.1 222 80.2
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.4e-92 344.0 345 58.0
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 2.0e-91 340.1 250 70.8
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 7.7e-88 328.2 204 80.4
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 3.8e-79 299.3 333 48.6
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 2.3e-76 290.0 249 61.8
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 2.2e-74 283.5 249 61.8
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 4.1e-73 279.3 169 81.7
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 3.6e-69 266.2 200 65.0
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 1.8e-68 263.8 302 46.4
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 1.1e-62 244.6 254 54.3
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 1.7e-58 230.7 124 96.8
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 4.1e-57 226.1 232 57.8
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 8.1e-53 211.8 144 77.1
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 1.1e-52 211.5 144 70.1
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 3.1e-52 209.9 154 69.5
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 4.9e-50 202.6 165 63.6
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 5.1e-47 192.6 329 38.6
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 2.8e-45 186.8 131 73.3
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 6.4e-42 175.6 110 80.9
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 7.1e-41 172.2 184 54.3
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 1.2e-40 171.4 341 34.6
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 1.7e-39 167.5 342 33.0
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 2.5e-38 163.7 323 32.2
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 3.3e-30 136.7 113 63.7
Oeu040341.1 Olea europaea HOM05D005314 ORTHO05D006522 5.8e-27 125.9 74 83.8
Gohir.D07G021800 Gossypium hirsutum HOM05D005314 ORTHO05D006522 6.2e-21 105.9 95 58.9
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 1.1e-20 105.1 95 63.2
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 4.0e-20 103.2 106 57.5
SEGI_34785 Sequoiadendron giganteum HOM05D005314 ORTHO05D006522 3.8e-18 96.7 73 63.0


User provided reference genes

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