Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g012010 Solanum pennellii HOM05D001774 ORTHO05D001663 4.0e-40 167.5 79 100.0
CAN.G1425.1 Capsicum annuum HOM05D001774 ORTHO05D001663 1.1e-21 106.3 56 85.7
PGSC0003DMG401008489 Solanum tuberosum HOM05D001774 ORTHO05D001663 1.1e-21 106.3 56 85.7
Sopen09g007340 Solanum pennellii HOM05D001774 ORTHO05D001663 1.9e-21 105.5 56 85.7
Solyc09g014510.3 Solanum lycopersicum HOM05D001774 ORTHO05D001663 7.1e-21 103.6 59 81.4
CAN.G154.13 Capsicum annuum HOM05D001774 ORTHO05D001663 2.1e-20 102.1 56 82.1
Nitab4.5_0000335g0180 Nicotiana tabacum HOM05D001774 ORTHO05D001663 1.0e-19 99.8 56 78.6
Nitab4.5_0019787g0010 Nicotiana tabacum HOM05D001774 ORTHO05D001663 1.0e-19 99.8 56 78.6
Peaxi162Scf00141g00333 Petunia axillaris HOM05D001774 ORTHO05D001663 2.3e-19 98.6 56 78.6
Peaxi162Scf00016g00150 Petunia axillaris HOM05D001774 ORTHO05D001663 1.5e-18 95.9 56 78.6
Oeu055162.1 Olea europaea HOM05D001774 ORTHO05D001663 8.1e-17 90.1 56 66.1
vmacro20255 Vaccinium macrocarpon HOM05D001774 ORTHO05D001663 2.4e-16 88.6 60 66.7
Cc06_g17370 Coffea canephora HOM05D001774 ORTHO05D001663 3.1e-16 88.2 60 65.0
Hma1.2p1_0362F.1_g136140 Hydrangea macrophylla HOM05D001774 ORTHO05D001663 4.0e-16 87.8 59 66.1
DCAR_011314 Daucus carota HOM05D001774 ORTHO05D001663 1.2e-15 86.3 56 71.4
CSS0046582 Camellia sinensis var. sinensis HOM05D000553 ORTHO05D000460 2.6e-15 85.1 60 65.0
TAR623G1447 Trochodendron aralioides HOM05D001774 ORTHO05D001663 3.4e-15 84.7 74 51.4
Actinidia11597 Actinidia chinensis HOM05D001774 ORTHO05D001663 5.8e-15 84.0 60 63.3
Manes.08G091600 Manihot esculenta HOM05D001774 ORTHO05D001663 7.6e-15 83.6 59 61.0
CSS0021801 Camellia sinensis var. sinensis HOM05D000553 ORTHO05D001663 9.9e-15 83.2 60 63.3
Eucgr.A00507 Eucalyptus grandis HOM05D001774 ORTHO05D001663 9.9e-15 83.2 60 63.3
Actinidia29108 Actinidia chinensis HOM05D001774 ORTHO05D001663 1.7e-14 82.4 59 64.4
Lj9A29T10 Lonicera japonica HOM05D001774 ORTHO05D001663 1.7e-14 82.4 60 61.7
GSVIVG01033968001 Vitis vinifera HOM05D001774 ORTHO05D001663 2.2e-14 82.0 71 53.5
Lj3A954T66 Lonicera japonica HOM05D001774 ORTHO05D001663 2.9e-14 81.6 60 61.7
Thecc.05G017300 Theobroma cacao HOM05D001774 ORTHO05D001663 2.9e-14 81.6 70 55.7
MD04G1151200 Malus domestica HOM05D001774 ORTHO05D001663 4.9e-14 80.9 57 64.9
Atru.chr8.2226 Acer truncatum HOM05D001774 ORTHO05D001663 6.4e-14 80.5 59 61.0
Potri.016G115100 Populus trichocarpa HOM05D001774 ORTHO05D001663 6.4e-14 80.5 59 61.0
Prupe.6G276100 Prunus persica HOM05D001774 ORTHO05D001663 6.4e-14 80.5 57 63.2
Sed0022286 Sechium edule HOM05D001774 ORTHO05D001663 6.4e-14 80.5 71 52.1
Rhsim05G0212800 Rhododendron simsii HOM05D001774 ORTHO05D001663 8.4e-14 80.1 60 60.0
Rhsim05G0213900 Rhododendron simsii HOM05D001774 ORTHO05D001663 8.4e-14 80.1 60 60.0
EL10Ac8g18556 Beta vulgaris HOM05D001774 ORTHO05D001663 1.1e-13 79.7 60 58.3
CiPaw.09G208500 Carya illinoinensis HOM05D001774 ORTHO05D001663 1.1e-13 79.7 61 60.7
Migut.J00180 Erythranthe guttata HOM05D001774 ORTHO05D001663 1.1e-13 79.7 55 63.6
Gohir.D01G217700 Gossypium hirsutum HOM05D001774 ORTHO05D001663 1.1e-13 79.7 56 66.1
Gorai.002G264100 Gossypium raimondii HOM05D001774 ORTHO05D001663 1.1e-13 79.7 56 66.1
Duzib106G0434 Durio zibethinus HOM05D001774 ORTHO05D001663 1.4e-13 79.3 70 52.9
ECA238G2690 Erigeron canadensis HOM05D001774 ORTHO05D001663 1.4e-13 79.3 55 65.5
HanXRQChr11g0342121 Helianthus annuus HOM05D001774 ORTHO05D001663 1.4e-13 79.3 55 65.5
Ciclev10022484m.g Citrus clementina HOM05D001774 ORTHO05D001663 1.9e-13 79.0 71 50.7
RcHm_v2.0_Chr3g0463251 Rosa chinensis HOM05D001774 ORTHO05D001663 1.9e-13 79.0 55 61.8
EL10Ac8g18553 Beta vulgaris HOM05D001774 ORTHO05D001663 2.4e-13 78.6 60 56.7
Dinv23095 Davidia involucrata HOM05D001774 ORTHO05D001663 2.4e-13 78.6 57 59.6
Ciclev10012931m.g Citrus clementina HOM05D001774 ORTHO05D001663 4.2e-13 77.8 71 49.3
MELO3C009173.2 Cucumis melo HOM05D001774 ORTHO05D001663 4.2e-13 77.8 70 51.4
CsaV3_3G033870 Cucumis sativus L. HOM05D001774 ORTHO05D001663 4.2e-13 77.8 70 51.4
TWI77G0126 Tripterygium wilfordii HOM05D001774 ORTHO05D001663 5.4e-13 77.4 72 51.4
Duzib093G1838 Durio zibethinus HOM05D001774 ORTHO05D001663 7.1e-13 77.0 59 59.3
Gohir.A01G227900 Gossypium hirsutum HOM05D001774 ORTHO05D001663 7.1e-13 77.0 54 66.7
MBI19_g27177_MAGBIO Magnolia biondii HOM05D001774 ORTHO05D001663 7.1e-13 77.0 71 50.7
Nn2g10207 Nelumbo nucifera HOM05D001774 ORTHO05D001663 7.1e-13 77.0 60 56.7
Nn2g11462 Nelumbo nucifera HOM05D001774 ORTHO05D001663 7.1e-13 77.0 60 56.7
MBI05_g34498_MAGBIO Magnolia biondii HOM05D001774 ORTHO05D001663 9.3e-13 76.6 71 50.7
Sc18g0000980 Simmondsia chinensis HOM05D001774 ORTHO05D001663 9.3e-13 76.6 56 58.9
FAN02G1616 Fragaria x ananassa HOM05D001774 ORTHO05D001663 1.2e-12 76.3 56 57.1
FAN05G3715 Fragaria x ananassa HOM05D000133 ORTHO05D003668 1.2e-12 76.3 56 57.1
COL.COLO4_14546 Corchorus olitorius HOM05D001774 ORTHO05D001663 1.6e-12 75.9 56 60.7
FvH4_6g11550 Fragaria vesca HOM05D001774 ORTHO05D001663 1.6e-12 75.9 55 58.2
FAN14G0465 Fragaria x ananassa HOM05D001774 ORTHO05D001663 1.6e-12 75.9 55 58.2
PSO161G0120 Papaver somniferum HOM05D001774 ORTHO05D001663 1.6e-12 75.9 60 55.0
QL07p035813 Quercus lobata HOM05D001774 ORTHO05D001663 1.6e-12 75.9 62 56.5
arahy.Tifrunner.gnm1.ann1.YH1IQ1 Arachis hypogaea HOM05D001774 ORTHO05D001663 2.1e-12 75.5 60 58.3
ClCG10G022070 Citrullus lanatus HOM05D001774 ORTHO05D001663 2.1e-12 75.5 60 56.7
Lj1g0007958 Lotus japonicus HOM05D001774 ORTHO05D001663 2.1e-12 75.5 60 58.3
PGR031G1394 Punica granatum HOM05D001774 ORTHO05D001663 2.1e-12 75.5 60 56.7
TWI53G1418 Tripterygium wilfordii HOM05D001774 ORTHO05D001663 2.1e-12 75.5 60 56.7
SGA_v2.0_scaffold240G44096 Striga asiatica HOM05D001774 ORTHO05D001663 2.7e-12 75.1 56 58.9
arahy.Tifrunner.gnm1.ann1.AC6B4W Arachis hypogaea HOM05D001774 ORTHO05D001663 3.5e-12 74.7 60 58.3
CANSAT35G1096 Cannabis sativa HOM05D001774 ORTHO05D001663 3.5e-12 74.7 60 58.3
DCAR_015088 Daucus carota HOM05D001774 ORTHO05D001663 3.5e-12 74.7 74 52.7
Lalb_Chr19g0124661 Lupinus albus HOM05D001774 ORTHO05D001663 4.6e-12 74.3 60 58.3
SEGI_08914 Sequoiadendron giganteum HOM05D001774 ORTHO05D001663 6.0e-12 73.9 71 50.7
ATR0618G357 Amborella trichopoda HOM05D001774 ORTHO05D001663 7.9e-12 73.6 70 48.6
AUR62033412 Chenopodium quinoa HOM05D001774 ORTHO05D001663 7.9e-12 73.6 60 51.7
FAN14G1014 Fragaria x ananassa HOM05D001774 ORTHO05D001663 7.9e-12 73.6 55 56.4
unitig_748.g7516 Utricularia gibba HOM05D001774 ORTHO05D001663 1.0e-11 73.2 56 51.8
SGA_v2.0_scaffold110G31220 Striga asiatica HOM05D001774 ORTHO05D001663 1.8e-11 72.4 55 56.4
Migut.L02007 Erythranthe guttata HOM05D001774 ORTHO05D001663 2.3e-11 72.0 56 53.6
PSO478G0585 Papaver somniferum HOM05D001774 ORTHO05D001663 2.3e-11 72.0 60 53.3
Phvul.008G105000 Phaseolus vulgaris HOM05D001774 ORTHO05D001663 3.0e-11 71.6 60 56.7
SalBow4G0683 Salvia bowleyana HOM05D001774 ORTHO05D001663 3.0e-11 71.6 60 55.0
SGA_v2.0_scaffold14G07149 Striga asiatica HOM05D001774 ORTHO05D001663 3.0e-11 71.6 56 57.1
Cpa.g.sc163.21 Carica papaya HOM05D001774 ORTHO05D001663 3.9e-11 71.2 56 53.6
Carub.0003s0811 Capsella rubella HOM05D001774 ORTHO05D001663 6.7e-11 70.5 59 52.5
TPR.G37909 Trifolium pratense HOM05D001774 ORTHO05D001663 8.7e-11 70.1 60 55.0
ECA248G3867 Erigeron canadensis HOM05D000034 ORTHO05D001663 1.5e-10 69.3 59 52.5
FvH4_6g28771 Fragaria vesca HOM05D001774 ORTHO05D001663 1.5e-10 69.3 55 54.5
FAN14G0095 Fragaria x ananassa HOM05D000537 ORTHO05D000415 1.5e-10 69.3 55 54.5
AL3G20000 Arabidopsis lyrata HOM05D001774 ORTHO05D001663 1.9e-10 68.9 59 52.5
BcaC05g29632 Brassica carinata HOM05D001774 ORTHO05D001663 1.9e-10 68.9 59 50.8
BcaC09g48000 Brassica carinata HOM05D001774 ORTHO05D001663 1.9e-10 68.9 59 50.8
A05p39860 Brassica napus HOM05D000553 ORTHO05D001663 1.9e-10 68.9 59 54.2
BraA05t22770Z Brassica rapa HOM05D000553 ORTHO05D001663 1.9e-10 68.9 59 54.2
FAN09G3969 Fragaria x ananassa HOM05D000537 ORTHO05D000415 1.9e-10 68.9 60 51.7
VMungo1127G0298 Vigna mungo HOM05D001774 ORTHO05D001663 1.9e-10 68.9 65 53.8
BcaC09g48044 Brassica carinata HOM05D001774 ORTHO05D001663 2.5e-10 68.6 59 50.8
BNapus_Darmor_BZH_scaffold_167p00220 Brassica napus HOM05D001774 ORTHO05D001663 2.5e-10 68.6 59 50.8
BolC1t05483H Brassica oleracea HOM05D001774 ORTHO05D001663 2.5e-10 68.6 59 50.8
BraA01t04324Z Brassica rapa HOM05D001774 ORTHO05D001663 2.5e-10 68.6 59 50.8
Glyma.18G200000 Glycine max HOM05D001774 ORTHO05D001663 2.5e-10 68.6 60 53.3
Medtr5g007850 Medicago truncatula HOM05D001774 ORTHO05D001663 2.5e-10 68.6 56 53.6
CARHR083320 Cardamine hirsuta HOM05D001774 ORTHO05D001663 3.3e-10 68.2 59 49.2
Lsat_1_v5_gn_5_153041 Lactuca sativa HOM05D001774 ORTHO05D001663 3.3e-10 68.2 59 52.5
Psat2g188080 Pisum sativum HOM05D001774 ORTHO05D001663 3.3e-10 68.2 60 53.3
VMungo1383G3037 Vigna mungo HOM05D001774 ORTHO05D001663 3.3e-10 68.2 55 60.0
C05p58900 Brassica napus HOM05D000553 ORTHO05D001663 4.3e-10 67.8 59 50.8
HanXRQChr01g0005961 Helianthus annuus HOM05D001774 ORTHO05D001663 4.3e-10 67.8 59 50.8
Aqoxy4G02600 Aquilegia oxysepala HOM05D001774 ORTHO05D001663 5.6e-10 67.4 60 48.3
AT3G08980 Arabidopsis thaliana HOM05D001774 ORTHO05D001663 7.4e-10 67.0 59 50.8
Thhalv10022228m.g Eutrema salsugineum HOM05D001774 ORTHO05D001663 9.6e-10 66.6 59 49.2
BolC5t34543H Brassica oleracea HOM05D001774 ORTHO05D001663 1.3e-09 66.2 59 50.8
Migut.J00177 Erythranthe guttata HOM05D007005 ORTHO05D008799 1.3e-09 66.2 46 60.9
Glyma.07G148800 Glycine max HOM05D001774 ORTHO05D001663 2.1e-09 65.5 60 51.7
THA.LOC104823289 Tarenaya hassleriana HOM05D001774 ORTHO05D001663 2.1e-09 65.5 59 50.8
CDE02G1377 Ceratophyllum demersum HOM05D001774 ORTHO05D001663 2.8e-09 65.1 70 41.4
Os03g0147900 Oryza sativa ssp. japonica HOM05D001774 ORTHO05D001663 3.7e-09 64.7 57 49.1
Sabra16G0111000 Salix brachista HOM05D001774 ORTHO05D001663 8.1e-09 63.5 43 58.1
HPP92_024364 Vanilla planifolia HOM05D001774 ORTHO05D001663 1.1e-08 63.2 69 43.5
Pp3c9_26010 Physcomitrium patens HOM05D001774 ORTHO05D001663 1.4e-08 62.8 70 45.7
Aa31LG5G18950 Aethionema arabicum HOM05D001774 ORTHO05D001663 2.4e-08 62.0 54 50.0
Haze_20993 Corylus avellana HOM05D001774 ORTHO05D001663 3.1e-08 61.6 48 54.2
Zm00001eb418310 Zea mays HOM05D001774 ORTHO05D001663 4.0e-08 61.2 56 48.2
Lsat_1_v5_gn_2_104441 Lactuca sativa HOM05D001774 ORTHO05D001663 5.3e-08 60.8 45 62.2
FAN09G4027 Fragaria x ananassa HOM05D001774 ORTHO05D001663 6.9e-08 60.5 45 55.6
Nn4g26597 Nelumbo nucifera HOM05D001774 ORTHO05D001663 9.0e-08 60.1 43 58.1
Os04g0165600 Oryza sativa ssp. japonica HOM05D001774 ORTHO05D001663 9.0e-08 60.1 56 48.2
Zm00001eb003850 Zea mays HOM05D001774 ORTHO05D001663 9.0e-08 60.1 53 47.2
MD12G1165200 Malus domestica HOM05D001774 ORTHO05D001663 4.5e-07 57.8 56 51.8
AUR62011038 Chenopodium quinoa HOM05D001774 ORTHO05D001663 9.9e-07 56.6 43 53.5
Mapoly0053s0064 Marchantia polymorpha HOM05D001774 ORTHO05D001663 1.7e-06 55.8 60 41.7
AagrBONN_evm.TU.Sc2ySwM_117.149 Anthoceros agrestis HOM05D001774 ORTHO05D001663 2.2e-06 55.5 70 38.6
arahy.Tifrunner.gnm1.ann1.GEX0PH Arachis hypogaea HOM05D001774 ORTHO05D001663 6.4e-06 53.9 44 54.5
FAN05G4917 Fragaria x ananassa HOM05D001774 ORTHO05D001663 6.4e-06 53.9 44 52.3
Ah.04g163930 Amaranthus hybridus HOM05D001774 ORTHO05D001663 8.4e-06 53.5 79 32.9


User provided reference genes

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