Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 5.7e-181 637.5 330 100.0
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 8.2e-180 633.6 330 99.4
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 3.9e-153 545.0 332 85.2
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 4.3e-152 541.6 331 84.9
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 6.1e-151 537.7 335 85.4
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 2.3e-113 412.9 333 65.2
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 1.5e-112 410.2 334 65.9
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 1.1e-110 404.1 331 63.7
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 3.0e-105 386.0 332 60.5
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 1.3e-103 380.6 332 60.2
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 1.6e-103 380.2 330 60.0
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 1.6e-103 380.2 332 60.8
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 2.0e-101 373.2 330 59.1
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 3.8e-100 369.0 343 65.3
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 1.0e-97 360.9 331 56.5
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 1.1e-96 357.5 332 56.3
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 1.1e-94 350.9 332 55.7
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 1.8e-94 350.1 331 56.5
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 2.6e-93 346.3 331 57.4
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 3.4e-93 345.9 335 55.2
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 3.4e-93 345.9 336 56.2
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 1.0e-92 344.4 335 55.2
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 1.3e-92 344.0 333 54.4
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 1.9e-91 340.1 332 52.7
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 2.5e-91 339.7 356 52.5
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 3.2e-91 339.3 331 55.0
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 5.5e-91 338.6 331 54.7
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 7.1e-91 338.2 341 55.7
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 2.3e-89 333.2 329 53.5
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 6.7e-89 331.6 312 56.4
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 1.1e-88 330.9 329 52.6
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 1.5e-88 330.5 341 54.5
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 7.4e-88 328.2 330 52.1
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 7.4e-88 328.2 342 54.7
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 1.8e-86 323.6 331 55.6
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 3.1e-86 322.8 333 53.2
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 4.1e-86 322.4 305 56.4
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 1.2e-85 320.9 330 53.9
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 1.2e-85 320.9 330 53.9
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 1.5e-85 320.5 334 53.0
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 3.8e-84 315.8 332 49.7
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 1.6e-82 310.5 336 50.9
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 3.6e-82 309.3 330 50.0
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 1.0e-81 307.8 216 72.7
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 1.4e-81 307.4 332 50.6
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 2.3e-81 306.6 332 52.1
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 3.0e-81 306.2 332 50.9
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 3.0e-81 306.2 330 48.8
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 3.9e-81 305.8 332 50.0
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 5.1e-81 305.4 336 48.5
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 8.8e-81 304.7 332 51.2
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 2.0e-80 303.5 334 50.3
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 4.3e-80 302.4 342 49.7
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 5.7e-80 302.0 341 48.7
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 7.4e-80 301.6 338 48.2
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 1.7e-79 300.4 334 48.2
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 4.8e-79 298.9 287 55.7
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 4.8e-79 298.9 331 50.2
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 6.3e-79 298.5 331 50.8
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 8.2e-79 298.1 330 49.1
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.4e-78 297.4 349 49.0
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 1.4e-78 297.4 334 51.2
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 1.4e-78 297.4 340 49.1
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 3.1e-78 296.2 337 48.7
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 3.1e-78 296.2 331 49.8
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 4.1e-78 295.8 342 49.1
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 5.3e-78 295.4 330 48.2
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.2e-77 294.3 344 48.5
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.2e-77 294.3 342 48.8
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.5e-77 293.9 349 48.4
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 2.0e-77 293.5 330 49.1
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 2.6e-77 293.1 334 48.5
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 4.5e-77 292.4 342 48.5
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 1.7e-76 290.4 336 48.5
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 2.9e-76 289.7 331 48.6
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 1.1e-75 287.7 334 48.5
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 4.2e-75 285.8 334 48.5
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 5.5e-75 285.4 336 48.2
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 2.1e-74 283.5 337 46.6
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 2.7e-74 283.1 333 45.9
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 2.7e-74 283.1 252 59.5
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 2.7e-74 283.1 352 47.4
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 1.0e-73 281.2 337 47.8
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 1.4e-73 280.8 337 46.3
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 3.9e-73 279.3 337 45.7
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 6.7e-73 278.5 338 46.2
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 1.1e-72 277.7 335 50.4
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 2.0e-72 276.9 334 45.5
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 5.7e-72 275.4 335 47.2
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 9.7e-72 274.6 333 46.2
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 1.7e-71 273.9 356 45.2
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 2.8e-71 273.1 278 54.0
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 3.1e-70 269.6 304 48.4
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 3.5e-69 266.2 330 46.1
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 1.3e-68 264.2 243 59.3
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 3.8e-68 262.7 335 44.8
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 8.5e-68 261.5 337 45.1
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 8.5e-68 261.5 337 45.1
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 1.9e-67 260.4 337 44.8
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 3.2e-67 259.6 356 42.7
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 7.2e-67 258.5 337 44.2
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 1.6e-66 257.3 337 43.9
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 1.6e-66 257.3 277 50.5
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 1.1e-64 251.1 335 44.2
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 2.0e-64 250.4 339 44.5
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 2.6e-64 250.0 336 42.6
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 3.3e-64 249.6 338 42.6
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 8.2e-63 245.0 350 42.9
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 9.1e-62 241.5 335 42.4
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 2.6e-61 240.0 331 41.4
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 1.0e-60 238.0 285 47.0
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 9.4e-59 231.5 250 49.6
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 8.0e-58 228.4 333 41.7
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 1.8e-57 227.3 332 41.6
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 1.8e-57 227.3 335 40.9
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 4.0e-57 226.1 338 40.5
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 8.5e-52 208.4 291 43.0
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 8.5e-52 208.4 212 56.6
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 3.6e-50 203.0 289 42.9
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 4.7e-50 202.6 240 47.1
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 1.2e-48 198.0 349 38.7
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 4.1e-46 189.5 358 37.4
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 3.6e-42 176.4 352 35.2
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 8.9e-41 171.8 333 35.1
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 6.3e-39 165.6 310 36.5
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 6.3e-39 165.6 333 35.1
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 6.3e-39 165.6 269 39.0
BolC8t50021H Brassica oleracea HOM05D004671 ORTHO05D005638 5.6e-35 152.5 154 48.1
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 7.3e-35 152.1 167 53.3
C08p23970 Brassica napus HOM05D004671 ORTHO05D005638 1.2e-34 151.4 154 48.7
BcaC07g39376 Brassica carinata HOM05D004671 ORTHO05D005638 1.2e-32 144.8 149 47.7
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 4.9e-31 139.4 288 35.4
BcaB01g00761 Brassica carinata HOM05D004671 ORTHO05D005638 5.4e-30 136.0 213 39.0
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 8.9e-25 118.6 245 35.1
MCO01G383 Micromonas commoda HOM05D004671 ORTHO05D005638 1.1e-17 95.1 296 26.0
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 5.2e-17 92.8 298 25.8
CBR_g5701 Chara braunii HOM05D004671 ORTHO05D005638 6.8e-17 92.4 187 28.9
AL5G14400 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 3.4e-16 90.1 236 32.2
CBR_g26425 Chara braunii HOM05D004671 ORTHO05D005638 1.3e-07 61.6 98 34.7


User provided reference genes

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