Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 4.6e-180 634.4 315 100.0
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 1.0e-179 633.3 315 99.7
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 6.2e-177 624.0 314 98.4
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 1.2e-175 619.8 315 97.5
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.6e-169 599.4 315 93.7
Peaxi162Scf00304g01342 Petunia axillaris HOM05D003935 ORTHO05D005096 1.8e-168 595.9 314 92.7
CSS0046772 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 9.3e-165 583.6 315 92.1
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 2.7e-164 582.0 315 91.1
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 2.7e-164 582.0 313 91.7
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 2.7e-164 582.0 314 92.4
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 3.5e-164 581.6 315 91.4
vmacro09915 Vaccinium macrocarpon HOM05D003935 ORTHO05D005096 6.7e-163 577.4 315 89.8
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 1.5e-162 576.2 313 90.7
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 1.5e-162 576.2 315 90.5
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 2.5e-162 575.5 313 89.1
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 7.4e-162 573.9 315 88.9
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 7.4e-162 573.9 315 91.1
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 2.8e-161 572.0 313 90.1
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 3.7e-161 571.6 315 90.2
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 3.7e-161 571.6 316 89.9
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 1.4e-160 569.7 315 88.3
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.8e-160 569.3 315 89.2
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 1.8e-160 569.3 316 89.2
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 2.4e-160 568.9 316 88.6
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 5.3e-160 567.8 313 88.5
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 6.9e-160 567.4 315 88.9
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 9.0e-160 567.0 315 87.9
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 9.0e-160 567.0 315 87.9
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 9.0e-160 567.0 330 86.4
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 1.2e-159 566.6 315 87.9
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 2.6e-159 565.5 313 89.1
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 3.4e-159 565.1 315 88.6
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 3.4e-159 565.1 316 88.9
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 3.4e-159 565.1 315 88.3
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 5.9e-159 564.3 338 84.9
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 1.7e-158 562.8 315 87.6
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 2.2e-158 562.4 316 86.7
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 2.9e-158 562.0 315 87.9
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 6.5e-158 560.8 315 87.0
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 8.5e-158 560.5 315 87.0
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 2.5e-157 558.9 315 87.3
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 3.2e-157 558.5 316 88.3
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 3.2e-157 558.5 316 88.3
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 4.2e-157 558.1 315 86.0
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 4.2e-157 558.1 315 87.3
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 7.2e-157 557.4 315 86.7
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.2e-156 556.6 316 88.0
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 1.2e-156 556.6 315 87.0
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 1.6e-156 556.2 317 88.0
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 1.6e-156 556.2 315 86.0
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 4.6e-156 554.7 315 85.7
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 1.0e-155 553.5 313 85.0
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.0e-155 553.5 316 87.3
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 1.8e-155 552.7 315 87.0
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 1.8e-155 552.7 315 85.7
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 2.3e-155 552.4 315 85.4
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 5.1e-155 551.2 313 86.9
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 5.1e-155 551.2 315 86.0
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 6.7e-155 550.8 315 86.7
QL02p025668 Quercus lobata HOM05D003935 ORTHO05D005096 6.7e-155 550.8 313 86.9
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 7.4e-154 547.4 312 86.5
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 9.7e-154 547.0 315 84.8
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 9.7e-154 547.0 315 87.3
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.6e-153 546.2 316 86.1
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 1.6e-153 546.2 316 86.1
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 2.8e-153 545.4 313 85.6
Lj3g0013928 Lotus japonicus HOM05D003935 ORTHO05D005096 2.8e-153 545.4 315 84.1
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 2.8e-153 545.4 314 86.6
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 3.7e-153 545.0 315 87.0
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 4.8e-153 544.7 314 84.7
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 8.2e-153 543.9 315 84.4
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 8.2e-153 543.9 315 84.1
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 1.1e-152 543.5 314 84.4
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 2.4e-152 542.3 316 85.1
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 5.3e-152 541.2 315 85.1
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 9.1e-152 540.4 313 85.9
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 1.5e-151 539.7 314 84.1
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 2.0e-151 539.3 315 84.4
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 2.0e-151 539.3 315 84.4
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 2.6e-151 538.9 319 82.1
HanXRQChr16g0512861 Helianthus annuus HOM05D003935 ORTHO05D005096 3.4e-151 538.5 315 84.1
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 4.5e-151 538.1 309 86.4
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 5.9e-151 537.7 315 83.8
Lsat_1_v5_gn_5_9340 Lactuca sativa HOM05D003935 ORTHO05D005096 7.7e-151 537.3 315 83.5
unitig_37.g12492 Utricularia gibba HOM05D003935 ORTHO05D005096 7.7e-151 537.3 315 84.8
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 1.0e-150 537.0 316 83.9
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 1.0e-150 537.0 315 83.8
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 1.3e-150 536.6 315 84.8
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 6.5e-150 534.3 316 83.5
Haze_21276 Corylus avellana HOM05D003935 ORTHO05D005096 6.5e-150 534.3 322 82.3
Rhsim03G0165100 Rhododendron simsii HOM05D003935 ORTHO05D005096 3.2e-149 531.9 337 79.8
FvH4_7g09530 Fragaria vesca HOM05D003935 ORTHO05D005096 7.2e-149 530.8 317 84.9
FAN06G5089 Fragaria x ananassa HOM05D003935 ORTHO05D005096 7.2e-149 530.8 317 84.9
FAN01G1603 Fragaria x ananassa HOM05D003935 ORTHO05D005096 9.4e-149 530.4 317 84.5
FAN03G1633 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.2e-148 530.0 317 84.9
FAN06G4162 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.2e-148 530.0 317 84.9
FAN10G2569 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.1e-148 529.3 317 84.5
FAN10G4028 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.1e-148 529.3 317 84.5
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 2.7e-148 528.9 383 73.1
Prupe.2G123000 Prunus persica HOM05D003935 ORTHO05D005096 4.6e-148 528.1 315 84.4
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 2.3e-147 525.8 317 82.6
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 3.0e-147 525.4 315 84.4
CDE04G2838 Ceratophyllum demersum HOM05D003935 ORTHO05D005096 2.0e-146 522.7 306 83.3
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 7.4e-146 520.8 309 83.5
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 9.7e-146 520.4 317 84.2
BolC2t06285H Brassica oleracea HOM05D003935 ORTHO05D005096 1.3e-145 520.0 318 82.7
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 2.2e-145 519.2 321 81.0
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 4.8e-145 518.1 313 82.4
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 1.4e-141 506.5 309 82.5
ECA232G4201 Erigeron canadensis HOM05D003935 ORTHO05D005096 1.6e-140 503.1 296 81.8
BcaC03g13194 Brassica carinata HOM05D003935 ORTHO05D005096 2.7e-140 502.3 315 80.6
BraA02t04926Z Brassica rapa HOM05D003935 ORTHO05D005096 2.7e-140 502.3 315 80.6
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 2.3e-139 499.2 310 78.7
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 2.3e-139 499.2 283 85.5
Aa31LG3G18800 Aethionema arabicum HOM05D003935 ORTHO05D005096 5.2e-139 498.0 313 80.8
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 5.2e-139 498.0 282 87.2
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 4.4e-138 495.0 285 84.6
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 1.3e-137 493.4 311 79.7
CiPaw.07G237000 Carya illinoinensis HOM05D003935 ORTHO05D005096 2.8e-137 492.3 325 76.6
BraA03t13837Z Brassica rapa HOM05D003935 ORTHO05D005096 8.2e-137 490.7 315 78.4
A03p47100 Brassica napus HOM05D003935 ORTHO05D005096 1.4e-136 490.0 315 78.4
Ah.07g207480 Amaranthus hybridus HOM05D003935 ORTHO05D005096 9.1e-136 487.3 288 83.3
Mapoly0003s0208 Marchantia polymorpha HOM05D003935 ORTHO05D005096 5.9e-135 484.6 317 75.1
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 3.8e-134 481.9 315 77.8
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 4.2e-133 478.4 462 57.8
Pp3c8_11900 Physcomitrium patens HOM05D003935 ORTHO05D005096 1.2e-130 470.3 311 76.2
Lsat_1_v5_gn_9_51820 Lactuca sativa HOM05D003935 ORTHO05D005096 7.5e-130 467.6 313 76.4
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 1.5e-122 443.4 262 84.0
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 2.2e-121 439.5 240 88.8
SMO134G0003 Selaginella moellendorffii HOM05D003935 ORTHO05D005096 3.7e-121 438.7 313 68.4
Os01g0200000 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 6.3e-121 438.0 316 69.9
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 9.1e-120 434.1 284 75.7
Zm00001eb391210 Zea mays HOM05D003935 ORTHO05D005096 2.0e-114 416.4 314 67.2
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 2.6e-98 362.8 213 81.7
CBR_g28076 Chara braunii HOM05D003935 ORTHO05D000002 1.4e-83 313.9 252 61.1
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 3.4e-82 309.3 177 85.3
MD07G1099100 Malus domestica HOM05D003935 ORTHO05D005096 2.4e-80 303.1 192 78.1
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 1.6e-79 300.4 173 85.5
Cre02.g102350 Chlamydomonas reinhardtii HOM05D003935 ORTHO05D005096 4.0e-75 285.8 308 51.3
MCO14G260 Micromonas commoda HOM05D003935 ORTHO05D005096 1.9e-72 276.9 315 48.6
arahy.Tifrunner.gnm1.ann1.VY970J Arachis hypogaea HOM05D003935 ORTHO05D005096 3.0e-70 269.6 164 80.5
AagrBONN_evm.TU.Sc2ySwM_369.216 Anthoceros agrestis HOM05D003935 ORTHO05D005096 3.1e-67 259.6 273 52.4
Nn051s41922 Nelumbo nucifera HOM05D003935 ORTHO05D005096 9.0e-67 258.1 151 81.5
Nn1g09078 Nelumbo nucifera HOM05D003935 ORTHO05D005096 9.0e-67 258.1 151 81.5
SEGI_20183 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 1.1e-64 251.1 189 64.0
arahy.Tifrunner.gnm1.ann1.XHAQ77 Arachis hypogaea HOM05D003935 ORTHO05D005096 8.1e-60 235.0 184 67.4
PRCOL_00004022 Prasinoderma coloniale HOM05D003935 ORTHO05D005096 1.4e-59 234.2 300 44.0
CsaV3_4G004080 Cucumis sativus L. HOM05D003935 ORTHO05D044846 1.8e-59 233.8 280 48.9
Nitab4.5_0001358g0040 Nicotiana tabacum HOM05D003935 ORTHO05D001473 9.9e-58 228.0 112 96.4
Haze_27326 Corylus avellana HOM05D003935 ORTHO05D005096 3.8e-57 226.1 311 42.8
Os10g0560450 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 9.6e-53 211.5 185 60.5
Rhsim01G0073400 Rhododendron simsii HOM05D003935 ORTHO05D005096 8.4e-49 198.4 149 70.5
MELO3C032833.2 Cucumis melo HOM05D003935 ORTHO05D044846 9.3e-48 194.9 304 43.4
Rhsim06G0236800 Rhododendron simsii HOM05D003935 ORTHO05D005096 9.3e-48 194.9 142 71.1
Zm00001eb363440 Zea mays HOM05D003935 ORTHO05D005096 1.6e-44 184.1 113 75.2
Zm00001eb216570 Zea mays HOM05D003935 ORTHO05D005096 3.7e-44 183.0 130 66.9
Zm00001eb003720 Zea mays HOM05D003935 ORTHO05D005096 6.3e-44 182.2 113 74.3
Zm00001eb078430 Zea mays HOM05D003935 ORTHO05D005096 6.3e-44 182.2 113 74.3
SEGI_13739 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 1.1e-43 181.4 103 83.5
Rhsim11G0131000 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.4e-43 181.0 179 58.1
AL7G47000 Arabidopsis lyrata HOM05D003935 ORTHO05D003430 6.9e-43 178.7 169 56.2
BcaB05g21605 Brassica carinata HOM05D003935 ORTHO05D005096 4.5e-42 176.0 137 65.7
Lj2A404G32 Lonicera japonica HOM05D000092 ORTHO05D000042 2.2e-36 157.1 277 35.7
Rhsim06G0096100 Rhododendron simsii HOM05D003935 ORTHO05D005096 6.3e-36 155.6 116 70.7
BcaC04g19029 Brassica carinata HOM05D003935 ORTHO05D005096 2.7e-31 140.2 114 65.8
BcaB01g00746 Brassica carinata HOM05D003935 ORTHO05D005096 1.4e-30 137.9 108 65.7
SEGI_32586 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 4.1e-27 126.3 68 85.3
A09p20840 Brassica napus HOM05D000772 ORTHO05D003239 9.4e-24 115.2 80 73.8
BraA09t37687Z Brassica rapa HOM05D000772 ORTHO05D003239 9.4e-24 115.2 80 73.8
Actinidia10778 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.0e-22 111.7 90 70.0
MD07G1099000 Malus domestica HOM05D003935 ORTHO05D005096 1.5e-21 107.8 60 83.3
CBR_g28077 Chara braunii HOM05D003935 ORTHO05D005096 5.7e-21 105.9 74 64.9
Lj9A23G20 Lonicera japonica HOM05D000092 ORTHO05D000042 8.2e-20 102.1 117 46.2
arahy.Tifrunner.gnm1.ann1.W2J7UU Arachis hypogaea HOM05D003935 ORTHO05D023770 2.2e-17 94.0 53 90.6
SalBow2G0135 Salvia bowleyana HOM05D003935 ORTHO05D357983 1.1e-16 91.7 47 89.4
C03p26610 Brassica napus HOM05D003935 ORTHO05D023770 1.5e-16 91.3 53 79.2
Rhsim12G0075300 Rhododendron simsii HOM05D016728 ORTHO05D338590 1.9e-16 90.9 102 53.9
Zm00001eb269920 Zea mays HOM05D001580 ORTHO05D001517 8.0e-15 85.5 52 78.8
BcaC03g17887 Brassica carinata HOM05D003935 ORTHO05D005096 1.3e-09 68.2 44 72.7
Zm00001eb395010 Zea mays HOM05D034860 ORTHO05D442630 2.3e-06 57.4 37 59.5
BcaC02g10492 Brassica carinata HOM05D036142 ORTHO05D023770 3.0e-06 57.0 67 47.8
C04p28240 Brassica napus HOM05D036142 ORTHO05D023770 3.0e-06 57.0 67 47.8
BolC4t24369H Brassica oleracea HOM05D036142 ORTHO05D023770 3.0e-06 57.0 67 47.8


User provided reference genes

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