Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g007140 Solanum pennellii HOM05D007207 ORTHO05D009041 7.6e-149 531.2 435 100.0
Solyc06g016750.3 Solanum lycopersicum HOM05D007207 ORTHO05D009041 2.3e-113 413.3 447 77.2
PGSC0003DMG401030137 Solanum tuberosum HOM05D038777 ORTHO05D009041 1.5e-96 357.5 403 76.4
CAN.G934.2 Capsicum annuum HOM05D007207 ORTHO05D009041 6.8e-57 225.7 477 57.0
Peaxi162Scf00686g00043 Petunia axillaris HOM05D007207 ORTHO05D009041 8.1e-42 175.6 104 81.7
MSTRG.17815 Avicennia marina HOM05D007207 ORTHO05D009041 1.4e-33 148.3 100 69.0
Dinv32761 Davidia involucrata HOM05D007207 ORTHO05D009041 1.8e-33 147.9 104 68.3
Hma1.2p1_1030F.1_g249850 Hydrangea macrophylla HOM05D007207 ORTHO05D009041 9.3e-30 135.6 95 65.3
Actinidia20448 Actinidia chinensis HOM05D007207 ORTHO05D009041 3.5e-29 133.7 98 69.4
Lsat_1_v5_gn_1_65500 Lactuca sativa HOM05D007207 ORTHO05D009041 7.9e-29 132.5 98 63.3
Cc01_g11290 Coffea canephora HOM05D007207 ORTHO05D009041 1.5e-27 128.3 97 60.8
HanXRQChr01g0018341 Helianthus annuus HOM05D007207 ORTHO05D009041 3.3e-27 127.1 131 51.9
SalBow3G2981 Salvia bowleyana HOM05D007207 ORTHO05D009041 7.3e-27 125.9 100 53.0
Nitab4.5_0003581g0040 Nicotiana tabacum HOM05D038777 ORTHO05D049402 1.6e-26 124.8 376 62.2
ECA248G1375 Erigeron canadensis HOM05D000214 ORTHO05D000131 1.4e-25 121.7 101 58.4
SGA_v2.0_scaffold80G25756 Striga asiatica HOM05D007207 ORTHO05D009041 1.4e-25 121.7 134 46.3
Nn2g13070 Nelumbo nucifera HOM05D007207 ORTHO05D009041 1.8e-25 121.3 102 61.8
TWI79G0777 Tripterygium wilfordii HOM05D007207 ORTHO05D009041 6.9e-25 119.4 96 59.4
TAR633G1504 Trochodendron aralioides HOM05D000656 ORTHO05D000871 1.2e-24 118.6 90 60.0
MD03G1114400 Malus domestica HOM05D007207 ORTHO05D009041 3.4e-24 117.1 96 54.2
CANSAT54G0517 Cannabis sativa HOM05D007207 ORTHO05D009041 7.6e-24 115.9 89 58.4
CiPaw.13G111000 Carya illinoinensis HOM05D007207 ORTHO05D009041 9.9e-24 115.5 96 55.2
QL01p022653 Quercus lobata HOM05D007207 ORTHO05D009041 2.2e-23 114.4 103 53.4
Psat7g224520 Pisum sativum HOM05D007207 ORTHO05D009041 8.4e-23 112.5 96 56.2
Hund08142 Selenicereus undatus HOM05D007207 ORTHO05D009041 8.4e-23 112.5 101 56.4
Manes.04G022800 Manihot esculenta HOM05D007207 ORTHO05D009041 1.4e-22 111.7 89 56.2
QL01p022696 Quercus lobata HOM05D007207 ORTHO05D009041 1.4e-22 111.7 103 52.4
Duzib170G0585 Durio zibethinus HOM05D007207 ORTHO05D009041 1.9e-22 111.3 91 53.8
Sed0024734 Sechium edule HOM05D007207 ORTHO05D009041 1.9e-22 111.3 95 51.6
GSVIVG01025169001 Vitis vinifera HOM05D007207 ORTHO05D009041 1.9e-22 111.3 98 54.1
TWI75G1762 Tripterygium wilfordii HOM05D007207 ORTHO05D009041 2.4e-22 110.9 96 56.2
Ca_05249_v3 Cicer arietinum L. HOM05D007207 ORTHO05D009041 3.2e-22 110.5 94 55.3
Rhsim01G0217900 Rhododendron simsii HOM05D007207 ORTHO05D009041 7.1e-22 109.4 134 47.8
Duzib168G2405 Durio zibethinus HOM05D007207 ORTHO05D009041 9.3e-22 109.0 94 52.1
Sc06g0010040 Simmondsia chinensis HOM05D007207 ORTHO05D009041 9.3e-22 109.0 96 55.2
Ciclev10030232m.g Citrus clementina HOM05D007207 ORTHO05D009041 1.6e-21 108.2 93 51.6
Lj3g0024872 Lotus japonicus HOM05D007207 ORTHO05D009041 2.7e-21 107.5 95 55.8
Thecc.09G257600 Theobroma cacao HOM05D007207 ORTHO05D009041 3.5e-21 107.1 89 53.9
Gohir.A07G117400 Gossypium hirsutum HOM05D007207 ORTHO05D009041 4.6e-21 106.7 96 52.1
Potri.009G012300 Populus trichocarpa HOM05D007207 ORTHO05D009041 4.6e-21 106.7 89 59.6
FvH4_3g32640 Fragaria vesca HOM05D007207 ORTHO05D009041 6.0e-21 106.3 96 50.0
FAN11G2184 Fragaria x ananassa HOM05D007207 ORTHO05D009041 6.0e-21 106.3 96 50.0
RcHm_v2.0_Chr5g0059711 Rosa chinensis HOM05D007207 ORTHO05D009041 6.0e-21 106.3 102 50.0
THA.LOC104815749 Tarenaya hassleriana HOM05D007207 ORTHO05D009041 7.9e-21 105.9 94 50.0
FAN25G0070 Fragaria x ananassa HOM05D007207 ORTHO05D009041 1.0e-20 105.5 90 53.3
PSO339G6489 Papaver somniferum HOM05D007207 ORTHO05D009041 1.0e-20 105.5 101 54.5
VMungo1127G1112 Vigna mungo HOM05D007207 ORTHO05D009041 1.0e-20 105.5 88 54.5
EL10Ac9g22498 Beta vulgaris HOM05D007207 ORTHO05D009041 1.8e-20 104.8 102 53.9
Gohir.D07G121800 Gossypium hirsutum HOM05D007207 ORTHO05D009041 1.8e-20 104.8 96 52.1
Gorai.001G131300 Gossypium raimondii HOM05D007207 ORTHO05D009041 1.8e-20 104.8 96 52.1
PGR102G0648 Punica granatum HOM05D007207 ORTHO05D009041 1.8e-20 104.8 96 53.1
Glyma.12G069100 Glycine max HOM05D007207 ORTHO05D009041 3.0e-20 104.0 130 41.5
PSO063G2032 Papaver somniferum HOM05D007207 ORTHO05D009041 3.0e-20 104.0 101 54.5
AUR62039621 Chenopodium quinoa HOM05D007207 ORTHO05D009041 3.9e-20 103.6 147 43.5
CARHR007760 Cardamine hirsuta HOM05D007207 ORTHO05D009041 5.1e-20 103.2 98 48.0
Phvul.011G077500 Phaseolus vulgaris HOM05D007207 ORTHO05D009041 5.1e-20 103.2 88 52.3
TPR.G17530 Trifolium pratense HOM05D007207 ORTHO05D009041 6.7e-20 102.8 88 55.7
Medtr4g059710 Medicago truncatula HOM05D007207 ORTHO05D009041 8.7e-20 102.4 94 50.0
FAN21G0351 Fragaria x ananassa HOM05D007207 ORTHO05D009041 1.1e-19 102.1 96 47.9
BcaC07g42510 Brassica carinata HOM05D007207 ORTHO05D009041 3.3e-19 100.5 98 46.9
A09p66080 Brassica napus HOM05D007207 ORTHO05D009041 4.3e-19 100.1 98 48.0
BraA09t41946Z Brassica rapa HOM05D007207 ORTHO05D009041 4.3e-19 100.1 98 48.0
Carub.0001s0733 Capsella rubella HOM05D007207 ORTHO05D009041 7.4e-19 99.4 94 46.8
BcaB02g06697 Brassica carinata HOM05D007207 ORTHO05D009041 1.3e-18 98.6 98 45.9
Actinidia03739 Actinidia chinensis HOM05D007207 ORTHO05D009041 1.6e-18 98.2 118 48.3
AT1G07980 Arabidopsis thaliana HOM05D007207 ORTHO05D009041 1.6e-18 98.2 144 39.6
Aa31LG2G9300 Aethionema arabicum HOM05D007207 ORTHO05D009041 2.8e-18 97.4 94 45.7
A06p05070 Brassica napus HOM05D007207 ORTHO05D009041 2.8e-18 97.4 98 44.9
BraA06t23713Z Brassica rapa HOM05D007207 ORTHO05D009041 2.8e-18 97.4 98 44.9
AL1G18310 Arabidopsis lyrata HOM05D007207 ORTHO05D009041 4.8e-18 96.7 94 45.7
Lalb_Chr01g0004241 Lupinus albus HOM05D007207 ORTHO05D009041 4.8e-18 96.7 93 51.6
Oeu027462.1 Olea europaea HOM05D007207 ORTHO05D009041 8.1e-18 95.9 69 59.4
TAR636G0495 Trochodendron aralioides HOM05D007207 ORTHO05D009041 8.1e-18 95.9 90 54.4
Thhalv10008787m.g Eutrema salsugineum HOM05D007207 ORTHO05D009041 1.1e-17 95.5 139 41.0
Ah.01g015070 Amaranthus hybridus HOM05D007207 ORTHO05D009041 1.4e-17 95.1 89 50.6
Sp1g06610 Schrenkiella parvula HOM05D007207 ORTHO05D009041 1.4e-17 95.1 98 42.9
CDE06G2547 Ceratophyllum demersum HOM05D007207 ORTHO05D009041 1.8e-17 94.7 141 36.9
BcaC05g24714 Brassica carinata HOM05D007207 ORTHO05D009041 2.4e-17 94.4 99 45.5
C05p06030 Brassica napus HOM05D007207 ORTHO05D009041 2.4e-17 94.4 99 45.5
BolC5t29362H Brassica oleracea HOM05D007207 ORTHO05D009041 2.4e-17 94.4 99 45.5
MBI11_g23474_MAGBIO Magnolia biondii HOM05D007207 ORTHO05D009041 2.4e-17 94.4 87 49.4
vmacro14446 Vaccinium macrocarpon HOM05D007207 ORTHO05D009041 3.1e-17 94.0 100 46.0
C08p50230 Brassica napus HOM05D007207 ORTHO05D009041 5.3e-17 93.2 98 42.9
BolC8t52552H Brassica oleracea HOM05D007207 ORTHO05D009041 5.3e-17 93.2 98 42.9
HPP92_012669 Vanilla planifolia HOM05D007207 ORTHO05D009041 5.3e-17 93.2 126 41.3
arahy.Tifrunner.gnm1.ann1.F7CTDZ Arachis hypogaea HOM05D007207 ORTHO05D009041 9.0e-17 92.4 94 44.7
arahy.Tifrunner.gnm1.ann1.KZS5BJ Arachis hypogaea HOM05D007207 ORTHO05D009041 9.0e-17 92.4 94 44.7
MELO3C025765.2 Cucumis melo HOM05D007207 ORTHO05D009041 1.5e-16 91.7 145 35.2
CDE07G0349 Ceratophyllum demersum HOM05D007207 ORTHO05D009041 2.0e-16 91.3 94 44.7
unitig_699.g19196 Utricularia gibba HOM05D007207 ORTHO05D009041 2.0e-16 91.3 72 58.3
Os03g0852300 Oryza sativa ssp. japonica HOM05D007207 ORTHO05D009041 2.2e-15 87.8 86 52.3
Migut.N02608 Erythranthe guttata HOM05D007207 ORTHO05D009041 6.5e-15 86.3 67 55.2
Atru.chr3.3663 Acer truncatum HOM05D007207 ORTHO05D009041 1.1e-14 85.5 119 40.3
SEGI_13018 Sequoiadendron giganteum HOM05D007207 ORTHO05D009041 5.5e-14 83.2 88 48.9
Sabra09G0008800 Salix brachista HOM05D007207 ORTHO05D009041 1.3e-12 78.6 144 36.8
ClCG02G021080 Citrullus lanatus HOM05D007207 ORTHO05D009041 3.0e-12 77.4 155 30.3
Prupe.6G099600 Prunus persica HOM05D007207 ORTHO05D009041 3.9e-12 77.0 65 53.8
AUR62024995 Chenopodium quinoa HOM05D007207 ORTHO05D009041 5.1e-12 76.6 64 59.4
Nitab4.5_0000181g0070 Nicotiana tabacum HOM05D038777 ORTHO05D049402 1.1e-11 75.5 410 51.2
Duzib170G0223 Durio zibethinus HOM05D007207 ORTHO05D009041 2.5e-11 74.3 67 47.8
CsaV3_6G021790 Cucumis sativus L. HOM05D007207 ORTHO05D009041 3.3e-11 73.9 67 46.3
Glyma.11G148000 Glycine max HOM05D007207 ORTHO05D009041 5.7e-11 73.2 124 35.5
CBR_g30333 Chara braunii HOM05D000789 ORTHO05D000897 4.1e-09 67.0 97 40.2
Aa31LG8G12190 Aethionema arabicum HOM05D007207 ORTHO05D009041 1.2e-08 65.5 77 41.6
AagrBONN_evm.TU.Sc2ySwM_228.2356 Anthoceros agrestis HOM05D007207 ORTHO05D009041 1.5e-08 65.1 101 37.6
SHI06088 Sapria himalayana HOM05D007207 ORTHO05D009041 2.2e-07 61.2 70 41.4
Pp3c17_12030 Physcomitrium patens HOM05D007207 ORTHO05D009041 1.9e-06 58.2 96 38.5
Zm00001eb064730 Zea mays HOM05D007207 ORTHO05D009041 1.9e-06 58.2 86 40.7
Mapoly0168s0007 Marchantia polymorpha HOM05D007207 ORTHO05D009041 3.2e-06 57.4 85 38.8


User provided reference genes

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