Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 1.5e-152 542.7 266 100.0
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 2.5e-150 535.4 266 98.9
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 2.5e-150 535.4 266 98.9
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 2.6e-144 515.4 266 95.5
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 3.8e-143 511.5 266 95.1
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 1.1e-142 510.0 266 94.7
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 1.1e-142 510.0 266 94.4
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 4.2e-142 508.1 263 94.7
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 2.7e-141 505.4 266 94.0
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 6.1e-141 504.2 266 94.4
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 7.9e-141 503.8 266 93.2
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 1.4e-140 503.1 264 93.9
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 1.4e-140 503.1 266 94.0
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 1.4e-140 503.1 266 93.2
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 2.3e-140 502.3 266 94.0
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 6.7e-140 500.7 264 93.6
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 1.1e-139 500.0 266 93.2
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 1.1e-139 500.0 266 93.2
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 1.1e-139 500.0 266 93.2
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 1.1e-139 500.0 266 93.2
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 1.1e-139 500.0 266 93.2
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 1.1e-139 500.0 266 93.2
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 1.1e-139 500.0 266 93.2
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 1.1e-139 500.0 266 93.2
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 2.0e-139 499.2 266 93.2
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 2.0e-139 499.2 266 93.2
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 2.6e-139 498.8 266 92.9
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 2.6e-139 498.8 266 92.9
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 7.4e-139 497.3 266 93.2
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 1.7e-138 496.1 266 93.2
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 2.4e-137 492.3 266 91.7
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 2.4e-137 492.3 266 91.7
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 9.1e-137 490.3 266 92.1
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 1.5e-136 489.6 263 92.0
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 1.0e-135 486.9 252 95.6
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 2.5e-134 482.3 252 94.4
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 5.5e-134 481.1 252 94.4
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 7.2e-134 480.7 252 94.0
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 1.2e-133 479.9 252 94.0
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 2.7e-133 478.8 250 94.4
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 3.9e-132 474.9 243 95.9
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 3.9e-132 474.9 243 95.9
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 4.5e-128 461.5 264 88.3
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 5.0e-127 458.0 265 86.8
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 2.5e-126 455.7 240 93.3
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 3.2e-126 455.3 264 88.3
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 5.5e-126 454.5 239 94.1
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 7.2e-126 454.1 240 92.9
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 2.1e-125 452.6 266 86.1
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 1.5e-123 446.4 263 84.0
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 7.5e-123 444.1 262 84.0
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 3.7e-122 441.8 253 88.1
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 2.7e-112 409.1 261 80.5
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.7e-112 407.5 257 82.1
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 4.0e-108 395.2 216 92.1
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 2.6e-107 392.5 209 92.3
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 9.8e-107 390.6 209 91.9
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 2.2e-106 389.4 211 92.9
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 2.2e-106 389.4 211 92.9
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 2.7e-104 382.5 252 79.0
Ah.10g027990 Amaranthus hybridus HOM05D005794 ORTHO05D006814 5.6e-102 374.8 204 92.2
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 6.8e-100 367.9 206 90.8
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 3.2e-97 359.0 209 84.7
DCAR_029125 Daucus carota HOM05D005794 ORTHO05D006814 1.2e-93 347.1 187 94.1
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 8.9e-92 340.9 184 91.8
Lsat_1_v5_gn_5_16240 Lactuca sativa HOM05D005794 ORTHO05D006814 2.0e-83 313.2 161 95.7
Solyc00g019730.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 4.3e-78 295.4 145 99.3
CAN.G1.2 Capsicum annuum HOM05D005794 ORTHO05D006814 1.2e-77 293.9 148 96.6
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 1.4e-76 290.4 156 92.3
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 2.4e-76 289.7 150 95.3
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 5.8e-75 285.0 249 64.3
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 1.4e-73 280.4 148 93.9
Ah.10g028710 Amaranthus hybridus HOM05D005794 ORTHO05D006814 3.5e-72 275.8 159 88.1
Nitab4.5_0009256g0040 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.8e-72 274.6 196 76.0
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 3.9e-71 272.3 145 91.0
ATR0012G027 Amborella trichopoda HOM05D005794 ORTHO05D006814 1.1e-65 254.2 213 64.8
VMungo0720G2970 Vigna mungo HOM05D005794 ORTHO05D006814 7.8e-64 248.1 130 94.6
Haze_26985 Corylus avellana HOM05D005794 ORTHO05D006814 3.0e-63 246.1 279 47.7
Nitab4.5_0004553g0080 Nicotiana tabacum HOM05D005794 ORTHO05D006814 6.9e-60 235.0 160 76.9
Zm00001eb384560 Zea mays HOM05D005794 ORTHO05D006814 1.1e-57 227.6 119 94.1
Zm00001eb436440 Zea mays HOM05D005794 ORTHO05D006814 1.9e-57 226.9 122 92.6
Sed0025732 Sechium edule HOM05D005794 ORTHO05D006814 4.2e-57 225.7 120 95.0
CAN.G134.170 Capsicum annuum HOM05D005794 ORTHO05D006814 8.7e-55 218.0 108 99.1
Nitab4.5_0003945g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.9e-54 216.9 116 90.5
Medtr0495s0020 Medicago truncatula HOM05D005794 ORTHO05D006814 1.9e-49 200.3 117 88.9
SalBow1G4628 Salvia bowleyana HOM05D005794 ORTHO05D006814 5.5e-49 198.7 106 93.4
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 3.5e-48 196.1 179 60.9
Nn1g10038 Nelumbo nucifera HOM05D005794 ORTHO05D006814 7.9e-48 194.9 103 93.2
Sed0001254 Sechium edule HOM05D005794 ORTHO05D006814 8.2e-45 184.9 105 88.6
C01p34950 Brassica napus HOM05D005794 ORTHO05D006814 2.0e-43 180.3 101 86.1
Nitab4.5_0001788g0090 Nicotiana tabacum HOM05D005794 ORTHO05D006814 6.5e-42 175.3 184 54.9
BraSC224t45812Z Brassica rapa HOM05D005794 ORTHO05D006814 1.6e-40 170.6 85 94.1
SHI20513 Sapria himalayana HOM05D005794 ORTHO05D006814 5.1e-39 165.6 210 46.7
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 1.8e-36 157.1 81 91.4
Nitab4.5_0000172g1250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.4e-35 152.9 108 74.1
Nitab4.5_0000886g0250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.5e-35 152.5 149 59.1
Cre04.g221700 Chlamydomonas reinhardtii HOM05D005794 ORTHO05D006814 2.2e-34 150.2 262 33.6
VMungo0720G2880 Vigna mungo HOM05D005794 ORTHO05D006814 1.6e-32 144.1 82 89.0
Oeu000568.1 Olea europaea HOM05D005794 ORTHO05D006814 3.0e-31 139.8 101 72.3
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 5.7e-30 135.6 82 80.5
BraSC177t45751Z Brassica rapa HOM05D005794 ORTHO05D006814 9.7e-30 134.8 83 84.3
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 1.7e-29 134.0 153 52.3
Nitab4.5_0000172g0610 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.2e-27 127.9 79 82.3
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 6.5e-26 122.1 63 88.9
Gohir.D04G096432 Gossypium hirsutum HOM05D005794 ORTHO05D006814 3.6e-24 116.3 101 66.3
SMO310G0001 Selaginella moellendorffii HOM05D005794 ORTHO05D006814 1.8e-23 114.0 154 46.8
Nitab4.5_0002418g0190 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.1e-23 112.5 63 84.1
Nitab4.5_0003945g0050 Nicotiana tabacum HOM05D018533 ORTHO05D006814 8.8e-23 111.7 68 79.4
Nitab4.5_0001152g0840 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.7e-21 106.3 67 79.1
MELO3C018157.2 Cucumis melo HOM05D005794 ORTHO05D006814 2.4e-20 103.6 57 87.7
Lsat_1_v5_gn_5_16260 Lactuca sativa HOM05D005794 ORTHO05D006814 3.8e-18 96.3 65 76.9
Psat0s4951g0040 Pisum sativum HOM05D005794 ORTHO05D006814 3.8e-18 96.3 172 41.3
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.2e-17 93.2 53 90.6
Nitab4.5_0000681g0270 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.5e-17 92.4 56 83.9
SHI54766 Sapria himalayana HOM05D005794 ORTHO05D006814 6.1e-16 89.0 48 85.4
SHI14272 Sapria himalayana HOM05D005794 ORTHO05D006814 5.2e-15 85.9 61 63.9
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 5.2e-15 85.9 40 90.0
Solyc03g013460.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 1.1e-14 84.7 65 61.5
TPR.G25412 Trifolium pratense HOM05D005794 ORTHO05D006814 1.5e-14 84.3 53 86.8
SHI14273 Sapria himalayana HOM05D005794 ORTHO05D006814 4.4e-14 82.8 119 43.7
SHI20514 Sapria himalayana HOM05D005794 ORTHO05D006814 2.8e-13 80.1 41 85.4
Duzib116G0892 Durio zibethinus HOM05D005794 ORTHO05D006814 1.4e-12 77.8 59 72.9
Oeu030834.3 Olea europaea HOM05D005794 ORTHO05D006814 4.5e-11 72.8 35 91.4
SHI16155 Sapria himalayana HOM05D005794 ORTHO05D006814 2.9e-10 70.1 84 46.4
Nitab4.5_0002418g0170 Nicotiana tabacum HOM05D009000 ORTHO05D010659 4.2e-09 66.2 31 93.5
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 9.4e-09 65.1 49 69.4
Aa31csc549G50 Aethionema arabicum HOM05D005794 ORTHO05D006814 3.6e-08 63.2 29 96.6
Nitab4.5_0004100g0120 Nicotiana tabacum HOM05D005794 ORTHO05D006814 6.1e-08 62.4 31 87.1
Nitab4.5_0004553g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 8.0e-08 62.0 74 47.3
SHI48878 Sapria himalayana HOM05D005794 ORTHO05D006814 1.0e-07 61.6 30 83.3
GSVIVG01004978001 Vitis vinifera HOM05D005210 ORTHO05D010080 6.7e-07 58.9 70 42.9
CSS0006210 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 2.6e-06 57.0 32 78.1
CSS0015180 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 7.5e-06 55.5 31 77.4


User provided reference genes

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