Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g005930 Solanum pennellii HOM05D006537 ORTHO05D008186 1.4e-29 133.3 72 100.0
Nitab4.5_0003132g0110 Nicotiana tabacum HOM05D006537 ORTHO05D008186 1.6e-09 66.6 40 90.0
Solyc06g073410.3 Solanum lycopersicum HOM05D006537 ORTHO05D008186 2.1e-09 66.2 38 97.4
Sopen06g029790 Solanum pennellii HOM05D006537 ORTHO05D008186 2.1e-09 66.2 38 97.4
PGSC0003DMG400027008 Solanum tuberosum HOM05D006537 ORTHO05D008186 2.1e-09 66.2 38 97.4
Oeu011639.1 Olea europaea HOM05D006537 ORTHO05D008186 2.7e-09 65.9 38 94.7
Peaxi162Scf00375g00618 Petunia axillaris HOM05D006537 ORTHO05D008186 4.7e-09 65.1 38 94.7
Rhsim09G0028500 Rhododendron simsii HOM05D006537 ORTHO05D008186 6.1e-09 64.7 38 92.1
Dinv44198 Davidia involucrata HOM05D006537 ORTHO05D008186 1.0e-08 63.9 38 92.1
Gohir.A02G015200 Gossypium hirsutum HOM05D006537 ORTHO05D008186 1.0e-08 63.9 38 92.1
Nitab4.5_0004579g0020 Nicotiana tabacum HOM05D006537 ORTHO05D008186 1.0e-08 63.9 38 92.1
Actinidia35970 Actinidia chinensis HOM05D006537 ORTHO05D008186 1.4e-08 63.5 38 89.5
CSS0005792 Camellia sinensis var. sinensis HOM05D006537 ORTHO05D008186 1.4e-08 63.5 38 89.5
Dinv22722 Davidia involucrata HOM05D006537 ORTHO05D008186 1.4e-08 63.5 38 89.5
Gohir.D02G016700 Gossypium hirsutum HOM05D006537 ORTHO05D008186 1.4e-08 63.5 38 92.1
Gorai.005G020200 Gossypium raimondii HOM05D006537 ORTHO05D008186 1.4e-08 63.5 38 92.1
TAR633G2589 Trochodendron aralioides HOM05D006537 ORTHO05D008186 1.4e-08 63.5 38 89.5
vmacro22675 Vaccinium macrocarpon HOM05D006537 ORTHO05D008186 1.4e-08 63.5 38 89.5
Ciclev10021930m.g Citrus clementina HOM05D006537 ORTHO05D008186 2.3e-08 62.8 38 86.8
Potri.007G127400 Populus trichocarpa HOM05D006537 ORTHO05D008186 2.3e-08 62.8 38 89.5
Sabra07G0103400 Salix brachista HOM05D006537 ORTHO05D008186 2.3e-08 62.8 38 89.5
Actinidia34608 Actinidia chinensis HOM05D006537 ORTHO05D008186 3.0e-08 62.4 40 82.5
BcaB01g04045 Brassica carinata HOM05D006537 ORTHO05D008186 3.0e-08 62.4 38 86.8
BcaC01g05952 Brassica carinata HOM05D006537 ORTHO05D008186 3.0e-08 62.4 38 86.8
A03p17600 Brassica napus HOM05D006537 ORTHO05D008186 3.0e-08 62.4 38 86.8
C03p20710 Brassica napus HOM05D006537 ORTHO05D008186 3.0e-08 62.4 38 86.8
BolC3t14452H Brassica oleracea HOM05D006537 ORTHO05D008186 3.0e-08 62.4 38 86.8
BraA03t11027Z Brassica rapa HOM05D006537 ORTHO05D008186 3.0e-08 62.4 38 86.8
Cpa.g.sc409.1 Carica papaya HOM05D006537 ORTHO05D008186 3.0e-08 62.4 38 86.8
COL.COLO4_24411 Corchorus olitorius HOM05D006537 ORTHO05D008186 3.0e-08 62.4 38 86.8
Manes.04G042325 Manihot esculenta HOM05D006537 ORTHO05D008186 4.0e-08 62.0 38 84.2
PGR083G1737 Punica granatum HOM05D006537 ORTHO05D008186 4.0e-08 62.0 38 84.2
QL10p048350 Quercus lobata HOM05D006537 ORTHO05D008186 4.0e-08 62.0 38 84.2
RcHm_v2.0_Chr4g0407291 Rosa chinensis HOM05D006537 ORTHO05D008186 4.0e-08 62.0 38 84.2
Hund03149 Selenicereus undatus HOM05D006537 ORTHO05D008186 4.0e-08 62.0 40 82.5
Thecc.04G185300 Theobroma cacao HOM05D006537 ORTHO05D008186 4.0e-08 62.0 38 86.8
Ca_20779_v3 Cicer arietinum L. HOM05D006537 ORTHO05D008186 5.2e-08 61.6 38 84.2
ClCG08G004470 Citrullus lanatus HOM05D006537 ORTHO05D008186 5.2e-08 61.6 38 86.8
MD04G1039500 Malus domestica HOM05D006537 ORTHO05D008186 5.2e-08 61.6 38 81.6
Phvul.011G055200 Phaseolus vulgaris HOM05D006537 ORTHO05D008186 5.2e-08 61.6 38 86.8
Prupe.1G190300 Prunus persica HOM05D006537 ORTHO05D008186 5.2e-08 61.6 38 81.6
TWI63G0033 Tripterygium wilfordii HOM05D006537 ORTHO05D008186 5.2e-08 61.6 38 84.2
VMungo1127G2200 Vigna mungo HOM05D006537 ORTHO05D008186 5.2e-08 61.6 38 86.8
Aa31LG5G5440 Aethionema arabicum HOM05D006537 ORTHO05D008186 6.7e-08 61.2 38 84.2
CiPaw.01G101300 Carya illinoinensis HOM05D006537 ORTHO05D008186 6.7e-08 61.2 38 84.2
Cc00_g09850 Coffea canephora HOM05D006537 ORTHO05D008186 6.7e-08 61.2 38 86.8
Duzib212G0958 Durio zibethinus HOM05D006537 ORTHO05D008186 6.7e-08 61.2 38 84.2
Duzib268G1074 Durio zibethinus HOM05D006537 ORTHO05D008186 6.7e-08 61.2 38 84.2
FvH4_4g11160 Fragaria vesca HOM05D006537 ORTHO05D008186 6.7e-08 61.2 38 81.6
FAN07G2858 Fragaria x ananassa HOM05D006537 ORTHO05D008186 6.7e-08 61.2 38 81.6
Glyma.11G128700 Glycine max HOM05D006537 ORTHO05D008186 6.7e-08 61.2 38 84.2
Sp4g13920 Schrenkiella parvula HOM05D006537 ORTHO05D008186 6.7e-08 61.2 38 84.2
THA.LOC104826193 Tarenaya hassleriana HOM05D006537 ORTHO05D008186 6.7e-08 61.2 38 84.2
arahy.Tifrunner.gnm1.ann1.RQ8JR0 Arachis hypogaea HOM05D006537 ORTHO05D008186 8.8e-08 60.8 38 81.6
arahy.Tifrunner.gnm1.ann1.W0CVEC Arachis hypogaea HOM05D006537 ORTHO05D008186 8.8e-08 60.8 38 81.6
CANSAT78G1337 Cannabis sativa HOM05D006537 ORTHO05D008186 8.8e-08 60.8 38 81.6
AUR62015408 Chenopodium quinoa HOM05D006537 ORTHO05D008186 8.8e-08 60.8 59 64.4
Medtr4g067050 Medicago truncatula HOM05D006537 ORTHO05D008186 8.8e-08 60.8 38 81.6
Nn1g09574 Nelumbo nucifera HOM05D006537 ORTHO05D008186 8.8e-08 60.8 38 84.2
ATR0686G132 Amborella trichopoda HOM05D006537 ORTHO05D008186 1.2e-07 60.5 38 84.2
EL10Ac3g05587 Beta vulgaris HOM05D006537 ORTHO05D008186 1.2e-07 60.5 59 62.7
MELO3C011641.2 Cucumis melo HOM05D006537 ORTHO05D008186 1.2e-07 60.5 38 84.2
CsaV3_6G003840 Cucumis sativus L. HOM05D006537 ORTHO05D008186 1.2e-07 60.5 38 84.2
Glyma.12G053200 Glycine max HOM05D006537 ORTHO05D008186 1.2e-07 60.5 38 81.6
Lalb_Chr01g0003221 Lupinus albus HOM05D006537 ORTHO05D008186 1.2e-07 60.5 59 64.4
Psat7g214000 Pisum sativum HOM05D006537 ORTHO05D008186 1.2e-07 60.5 38 81.6
SGA_v2.0_scaffold74G24571 Striga asiatica HOM05D006537 ORTHO05D008186 1.2e-07 60.5 38 86.8
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 1.2e-07 60.5 60 61.7
Aqoxy2G04100 Aquilegia oxysepala HOM05D006537 ORTHO05D008186 1.5e-07 60.1 38 78.9
AL4G26710 Arabidopsis lyrata HOM05D006537 ORTHO05D008186 1.5e-07 60.1 38 81.6
AT2G31440 Arabidopsis thaliana HOM05D006537 ORTHO05D008186 1.5e-07 60.1 38 81.6
Carub.0004s1277 Capsella rubella HOM05D006537 ORTHO05D008186 1.5e-07 60.1 38 81.6
CARHR125090 Cardamine hirsuta HOM05D006537 ORTHO05D008186 1.5e-07 60.1 38 81.6
Thhalv10017140m.g Eutrema salsugineum HOM05D006537 ORTHO05D008186 1.5e-07 60.1 38 81.6
Atru.chr3.1537 Acer truncatum HOM05D006537 ORTHO05D008186 2.0e-07 59.7 38 81.6
Migut.C00288 Erythranthe guttata HOM05D006537 ORTHO05D008186 2.0e-07 59.7 38 86.8
Lj3g0010197 Lotus japonicus HOM05D006537 ORTHO05D008186 2.0e-07 59.7 38 81.6
TPR.G34202 Trifolium pratense HOM05D006537 ORTHO05D008186 2.0e-07 59.7 38 78.9
MSTRG.24999 Avicennia marina HOM05D006537 ORTHO05D008186 2.6e-07 59.3 39 84.6
Haze_01534 Corylus avellana HOM05D006537 ORTHO05D008186 2.6e-07 59.3 38 84.2
Eucgr.A00074 Eucalyptus grandis HOM05D006537 ORTHO05D008186 2.6e-07 59.3 38 78.9
Eucgr.A00271 Eucalyptus grandis HOM05D006537 ORTHO05D008186 2.6e-07 59.3 38 78.9
CAN.G65.183 Capsicum annuum HOM05D006537 ORTHO05D008186 3.3e-07 58.9 34 91.2
ECA238G3138 Erigeron canadensis HOM05D000961 ORTHO05D000001 3.3e-07 58.9 38 84.2
PSO675G9308 Papaver somniferum HOM05D006537 ORTHO05D008186 3.3e-07 58.9 38 78.9
Lsat_1_v5_gn_2_34721 Lactuca sativa HOM05D006537 ORTHO05D008186 4.4e-07 58.5 38 81.6
Lj6A56G22 Lonicera japonica HOM05D006537 ORTHO05D008186 4.4e-07 58.5 37 86.5
Sed0000584 Sechium edule HOM05D006537 ORTHO05D008186 4.4e-07 58.5 38 78.9
GSVIVG01010746001 Vitis vinifera HOM05D006537 ORTHO05D008186 4.4e-07 58.5 38 78.9
DCAR_022903 Daucus carota HOM05D006537 ORTHO05D008186 7.5e-07 57.8 38 81.6
PSO732G0008 Papaver somniferum HOM05D006537 ORTHO05D008186 7.5e-07 57.8 38 76.3
SEGI_14947 Sequoiadendron giganteum HOM05D006537 ORTHO05D008186 1.3e-06 57.0 38 73.7
HPP92_005584 Vanilla planifolia HOM05D006537 ORTHO05D008186 1.7e-06 56.6 38 68.4
HPP92_005589 Vanilla planifolia HOM05D006537 ORTHO05D008186 1.7e-06 56.6 38 68.4
HanXRQChr14g0433111 Helianthus annuus HOM05D006537 ORTHO05D008186 2.8e-06 55.8 38 76.3
Sc25g0002980 Simmondsia chinensis HOM05D006537 ORTHO05D008186 4.8e-06 55.1 34 82.4


User provided reference genes

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