Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 1.6e-35 152.1 73 100.0
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 4.9e-16 87.4 47 89.4
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 4.9e-16 87.4 47 89.4
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 4.6e-14 80.9 47 83.0
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 4.6e-14 80.9 47 83.0
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 4.6e-14 80.9 47 83.0
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 5.9e-14 80.5 47 83.0
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 5.9e-14 80.5 47 80.9
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 5.9e-14 80.5 47 80.9
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 1.0e-13 79.7 47 78.7
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 1.0e-13 79.7 47 80.9
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 1.0e-13 79.7 45 84.4
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 1.0e-13 79.7 47 80.9
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 1.3e-13 79.3 47 83.0
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 1.3e-13 79.3 47 80.9
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 1.3e-13 79.3 47 80.9
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 1.3e-13 79.3 47 80.9
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 1.3e-13 79.3 47 80.9
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 1.3e-13 79.3 47 80.9
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 1.3e-13 79.3 47 80.9
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 1.3e-13 79.3 47 78.7
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 1.3e-13 79.3 47 80.9
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 1.3e-13 79.3 47 80.9
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 1.3e-13 79.3 47 80.9
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 1.3e-13 79.3 47 78.7
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 1.7e-13 79.0 47 78.7
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 1.7e-13 79.0 47 78.7
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 1.7e-13 79.0 47 78.7
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 1.7e-13 79.0 47 78.7
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 1.7e-13 79.0 47 78.7
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 1.7e-13 79.0 47 80.9
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 2.3e-13 78.6 45 82.2
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 2.3e-13 78.6 47 80.9
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 2.9e-13 78.2 47 78.7
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 2.9e-13 78.2 45 80.0
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 3.9e-13 77.8 47 78.7
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 3.9e-13 77.8 47 78.7
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 3.9e-13 77.8 47 76.6
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 3.9e-13 77.8 47 78.7
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 3.9e-13 77.8 47 78.7
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 5.0e-13 77.4 47 78.7
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 5.0e-13 77.4 45 80.0
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 5.0e-13 77.4 47 76.6
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 5.0e-13 77.4 47 83.0
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 6.6e-13 77.0 47 78.7
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 6.6e-13 77.0 45 80.0
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 6.6e-13 77.0 47 76.6
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 6.6e-13 77.0 45 77.8
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 6.6e-13 77.0 47 76.6
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 6.6e-13 77.0 45 80.0
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 6.6e-13 77.0 45 80.0
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 6.6e-13 77.0 47 76.6
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 8.6e-13 76.6 47 78.7
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 1.1e-12 76.3 45 80.0
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 1.1e-12 76.3 45 80.0
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 1.1e-12 76.3 47 76.6
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.1e-12 76.3 47 78.7
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.1e-12 76.3 47 76.6
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 1.1e-12 76.3 45 77.8
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 1.1e-12 76.3 47 74.5
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 1.5e-12 75.9 47 76.6
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 1.9e-12 75.5 47 74.5
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 1.9e-12 75.5 47 74.5
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 1.9e-12 75.5 47 74.5
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 2.5e-12 75.1 47 74.5
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 2.5e-12 75.1 47 74.5
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 2.5e-12 75.1 47 74.5
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 2.5e-12 75.1 47 74.5
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 2.5e-12 75.1 47 74.5
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 2.5e-12 75.1 47 76.6
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 2.5e-12 75.1 45 77.8
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 2.5e-12 75.1 45 77.8
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 2.5e-12 75.1 47 74.5
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 2.5e-12 75.1 49 73.5
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 3.3e-12 74.7 47 76.6
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 3.3e-12 74.7 47 76.6
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 3.3e-12 74.7 47 76.6
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 3.3e-12 74.7 47 74.5
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 3.3e-12 74.7 45 77.8
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 3.3e-12 74.7 47 74.5
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 3.3e-12 74.7 45 77.8
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 3.3e-12 74.7 47 76.6
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 4.3e-12 74.3 47 76.6
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 4.3e-12 74.3 47 76.6
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 4.3e-12 74.3 47 74.5
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 4.3e-12 74.3 47 74.5
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 5.6e-12 73.9 45 77.8
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 5.6e-12 73.9 45 77.8
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 5.6e-12 73.9 47 76.6
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 5.6e-12 73.9 47 78.7
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 5.6e-12 73.9 45 77.8
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 7.3e-12 73.6 49 69.4
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 7.3e-12 73.6 47 74.5
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 7.3e-12 73.6 45 75.6
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 7.3e-12 73.6 45 75.6
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 9.5e-12 73.2 47 74.5
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 9.5e-12 73.2 47 74.5
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 9.5e-12 73.2 47 72.3
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 9.5e-12 73.2 45 75.6
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 9.5e-12 73.2 47 72.3
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 1.2e-11 72.8 47 74.5
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 1.2e-11 72.8 47 72.3
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 1.2e-11 72.8 46 73.9
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 1.6e-11 72.4 47 72.3
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 1.6e-11 72.4 47 74.5
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 1.6e-11 72.4 45 75.6
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 1.6e-11 72.4 45 75.6
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 1.6e-11 72.4 47 70.2
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 2.1e-11 72.0 47 72.3
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 2.1e-11 72.0 47 72.3
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 2.1e-11 72.0 47 72.3
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 2.1e-11 72.0 47 72.3
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 2.1e-11 72.0 47 72.3
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 2.1e-11 72.0 47 72.3
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 2.1e-11 72.0 46 73.9
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 2.1e-11 72.0 47 72.3
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 2.8e-11 71.6 44 79.5
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 2.8e-11 71.6 47 72.3
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 2.8e-11 71.6 47 72.3
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 2.8e-11 71.6 47 70.2
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 3.6e-11 71.2 47 74.5
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 3.6e-11 71.2 47 72.3
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 3.6e-11 71.2 47 72.3
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 3.6e-11 71.2 47 70.2
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 4.7e-11 70.9 45 71.1
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 4.7e-11 70.9 44 75.0
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 4.7e-11 70.9 53 69.8
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 8.0e-11 70.1 45 73.3
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 1.0e-10 69.7 47 68.1
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 1.0e-10 69.7 47 68.1
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 1.0e-10 69.7 47 68.1
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 1.0e-10 69.7 47 68.1
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 1.0e-10 69.7 53 67.9
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 1.4e-10 69.3 47 70.2
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 1.4e-10 69.3 46 67.4
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 1.8e-10 68.9 47 70.2
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.8e-10 68.9 47 63.8
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 2.3e-10 68.6 45 68.9
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 2.3e-10 68.6 47 70.2
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 3.1e-10 68.2 47 66.0
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 3.1e-10 68.2 47 68.1
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 1.2e-09 66.2 46 69.6
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 2.0e-09 65.5 47 68.1
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 2.0e-09 65.5 47 68.1
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 9.8e-09 63.2 37 75.7
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 1.4e-07 59.3 44 56.8
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 1.4e-07 59.3 44 61.4
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 1.4e-07 59.3 44 61.4
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 2.0e-06 55.5 38 65.8
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 2.0e-06 55.5 44 52.3


User provided reference genes

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