Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g003890 Solanum pennellii HOM05D005743 ORTHO05D007031 3.3e-311 1070.8 541 100.0
Solyc06g009130.3 Solanum lycopersicum HOM05D005743 ORTHO05D007031 4.9e-307 1057.0 541 98.9
Nitab4.5_0005805g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.1e-290 1002.7 541 93.2
Nitab4.5_0002470g0070 Nicotiana tabacum HOM05D005743 ORTHO05D007031 9.4e-290 999.6 542 92.6
CAN.G1989.8 Capsicum annuum HOM05D005743 ORTHO05D007031 5.7e-287 990.3 541 92.6
CAN.G1280.3 Capsicum annuum HOM05D005743 ORTHO05D007031 8.2e-278 959.9 543 90.4
Peaxi162Scf00399g00716 Petunia axillaris HOM05D005743 ORTHO05D007031 3.6e-265 917.9 516 87.6
Dinv19686 Davidia involucrata HOM05D005743 ORTHO05D007031 6.4e-246 854.0 542 79.7
Oeu046676.1 Olea europaea HOM05D005743 ORTHO05D007031 5.2e-240 834.3 542 78.2
Atru.chr5.1142 Acer truncatum HOM05D005743 ORTHO05D007031 1.4e-237 826.2 548 77.0
COL.COLO4_23341 Corchorus olitorius HOM05D005743 ORTHO05D007031 1.3e-235 819.7 535 78.9
Hma1.2p1_0491F.1_g164590 Hydrangea macrophylla HOM05D005743 ORTHO05D007031 1.5e-234 816.2 528 78.2
MBI18_g06031_MAGBIO Magnolia biondii HOM05D005743 ORTHO05D007031 1.5e-234 816.2 541 76.2
CSS0024650 Camellia sinensis var. sinensis HOM05D005743 ORTHO05D007031 5.6e-234 814.3 542 76.8
TAR362G0334 Trochodendron aralioides HOM05D005743 ORTHO05D007031 5.6e-234 814.3 536 77.8
Migut.D00150 Erythranthe guttata HOM05D005743 ORTHO05D007031 7.3e-234 813.9 541 76.3
Ciclev10019600m.g Citrus clementina HOM05D005743 ORTHO05D007031 3.6e-233 811.6 545 75.2
Cfa005908 Carpinus fangiana HOM05D005743 ORTHO05D007031 3.1e-232 808.5 549 76.9
Thecc.01G301000 Theobroma cacao HOM05D005743 ORTHO05D007031 3.1e-232 808.5 534 77.3
Rhsim01G0285500 Rhododendron simsii HOM05D005743 ORTHO05D007031 8.9e-232 807.0 543 76.1
CANSAT25G1370 Cannabis sativa HOM05D005743 ORTHO05D007031 1.2e-231 806.6 533 76.9
QL12p028420 Quercus lobata HOM05D005743 ORTHO05D007031 1.2e-231 806.6 531 77.4
Prupe.8G261900 Prunus persica HOM05D005743 ORTHO05D007031 5.8e-231 804.3 532 75.2
Cc01_g20880 Coffea canephora HOM05D005743 ORTHO05D007031 6.4e-230 800.8 537 76.7
Migut.O00421 Erythranthe guttata HOM05D005743 ORTHO05D007031 1.9e-229 799.3 544 75.9
TWI59G0198 Tripterygium wilfordii HOM05D005743 ORTHO05D007031 4.1e-229 798.1 542 74.7
Manes.01G219600 Manihot esculenta HOM05D005743 ORTHO05D007031 7.1e-229 797.3 538 74.0
MD03G1288600 Malus domestica HOM05D005743 ORTHO05D007031 1.2e-228 796.6 530 76.6
Potri.014G128600 Populus trichocarpa HOM05D005743 ORTHO05D007031 1.6e-228 796.2 543 75.1
PSO170G2277 Papaver somniferum HOM05D005743 ORTHO05D007031 2.1e-228 795.8 527 76.5
Migut.N01507 Erythranthe guttata HOM05D005743 ORTHO05D007031 3.5e-228 795.0 543 75.3
PSO407G0387 Papaver somniferum HOM05D005743 ORTHO05D007031 7.8e-228 793.9 527 76.5
Gorai.007G127900 Gossypium raimondii HOM05D005743 ORTHO05D007031 1.7e-227 792.7 534 76.2
RcHm_v2.0_Chr6g0294071 Rosa chinensis HOM05D005743 ORTHO05D007031 3.9e-227 791.6 532 74.4
SalBow2G1764 Salvia bowleyana HOM05D005743 ORTHO05D007031 5.1e-227 791.2 542 73.2
Aqoxy2G02938 Aquilegia oxysepala HOM05D005743 ORTHO05D007031 8.6e-227 790.4 537 74.7
PGR044G1461 Punica granatum HOM05D005743 ORTHO05D007031 4.3e-226 788.1 588 71.3
CsaV3_4G000840 Cucumis sativus L. HOM05D005743 ORTHO05D007031 5.6e-226 787.7 548 73.9
Lj2A1195G24 Lonicera japonica HOM05D005743 ORTHO05D007031 7.3e-226 787.3 542 74.4
MELO3C017953.2 Cucumis melo HOM05D005743 ORTHO05D007031 9.5e-226 786.9 548 74.8
Sed0000130 Sechium edule HOM05D005743 ORTHO05D007031 6.2e-225 784.3 544 74.6
Ca_10331_v3 Cicer arietinum L. HOM05D005743 ORTHO05D007031 8.1e-225 783.9 526 75.1
Duzib138G1616 Durio zibethinus HOM05D005743 ORTHO05D007031 1.1e-224 783.5 528 76.5
GSVIVG01028023001 Vitis vinifera HOM05D005743 ORTHO05D007031 4.0e-224 781.6 526 75.9
FAN20G0637 Fragaria x ananassa HOM05D005743 ORTHO05D007031 5.2e-224 781.2 520 75.0
FAN15G2676 Fragaria x ananassa HOM05D005743 ORTHO05D007031 2.6e-223 778.9 524 74.8
VMungo0720G3165 Vigna mungo HOM05D005743 ORTHO05D007031 4.4e-223 778.1 526 74.3
arahy.Tifrunner.gnm1.ann1.V1RZF6 Arachis hypogaea HOM05D005743 ORTHO05D007031 5.8e-223 777.7 531 74.4
arahy.Tifrunner.gnm1.ann1.39WPG8 Arachis hypogaea HOM05D005743 ORTHO05D007031 6.4e-222 774.2 531 74.0
Cpa.g.sc9.258 Carica papaya HOM05D005743 ORTHO05D007031 2.4e-221 772.3 527 73.6
ClCG10G010970 Citrullus lanatus HOM05D005743 ORTHO05D007031 5.4e-221 771.2 581 70.2
Medtr1g088430 Medicago truncatula HOM05D005743 ORTHO05D007031 5.4e-221 771.2 529 74.5
Lj5g0015401 Lotus japonicus HOM05D005743 ORTHO05D007031 7.1e-221 770.8 530 73.4
DCAR_005790 Daucus carota HOM05D005743 ORTHO05D007031 1.2e-220 770.0 560 70.0
Glyma.10G018000 Glycine max HOM05D005743 ORTHO05D007031 1.2e-220 770.0 530 74.0
Phvul.007G147000 Phaseolus vulgaris HOM05D005743 ORTHO05D007031 1.6e-220 769.6 526 73.6
Gohir.D11G119400 Gossypium hirsutum HOM05D005743 ORTHO05D007031 4.6e-220 768.1 533 74.1
THA.LOC104817489 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 1.3e-219 766.5 533 71.3
TPR.G33974 Trifolium pratense HOM05D005743 ORTHO05D007031 3.0e-219 765.4 529 73.3
THA.LOC104827666 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 1.9e-218 762.7 541 69.5
SalBow3G4402 Salvia bowleyana HOM05D005743 ORTHO05D007031 2.5e-218 762.3 542 72.9
Sc05g0003820 Simmondsia chinensis HOM05D005743 ORTHO05D007031 2.1e-217 759.2 524 74.0
Lsat_1_v5_gn_5_191280 Lactuca sativa HOM05D005743 ORTHO05D007031 2.8e-217 758.8 530 73.2
SGA_v2.0_scaffold198G41143 Striga asiatica HOM05D005743 ORTHO05D007031 3.1e-216 755.4 554 71.1
CARHR143000 Cardamine hirsuta HOM05D005743 ORTHO05D007031 6.9e-216 754.2 542 69.7
Thhalv10001391m.g Eutrema salsugineum HOM05D005743 ORTHO05D007031 1.5e-215 753.1 543 69.8
Carub.0004s3033 Capsella rubella HOM05D005743 ORTHO05D007031 2.6e-215 752.3 543 70.2
Sabra14G0095500 Salix brachista HOM05D005743 ORTHO05D007031 1.7e-214 749.6 559 69.4
AL4G47180 Arabidopsis lyrata HOM05D005743 ORTHO05D007031 2.2e-214 749.2 545 70.6
AT2G47600 Arabidopsis thaliana HOM05D005743 ORTHO05D007031 4.9e-214 748.0 545 70.8
HanXRQChr13g0413001 Helianthus annuus HOM05D005743 ORTHO05D007031 8.4e-214 747.3 535 70.8
BraA05t19031Z Brassica rapa HOM05D005743 ORTHO05D007031 2.4e-213 745.7 544 69.7
FvH4_2g25770 Fragaria vesca HOM05D005743 ORTHO05D007031 3.2e-213 745.3 490 76.3
A05p00330 Brassica napus HOM05D005743 ORTHO05D007031 4.2e-213 745.0 544 69.5
Eucgr.K03487 Eucalyptus grandis HOM05D005743 ORTHO05D007031 5.4e-213 744.6 526 71.9
C04p00250 Brassica napus HOM05D005743 ORTHO05D007031 9.3e-213 743.8 544 69.5
BolC4t21668H Brassica oleracea HOM05D005743 ORTHO05D007031 9.3e-213 743.8 544 69.5
Aa31LG1G28940 Aethionema arabicum HOM05D005743 ORTHO05D007031 1.2e-212 743.4 527 71.5
AUR62008667 Chenopodium quinoa HOM05D005743 ORTHO05D007031 5.1e-211 738.0 524 73.1
AUR62025577 Chenopodium quinoa HOM05D005743 ORTHO05D007031 6.6e-211 737.6 524 73.1
FAN24G1083 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.4e-208 729.9 489 75.1
HPP92_016082 Vanilla planifolia HOM05D005743 ORTHO05D007031 9.0e-208 727.2 521 70.8
Hund18172 Selenicereus undatus HOM05D005743 ORTHO05D007031 2.9e-206 722.2 523 71.3
Os11g0660000 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 3.8e-206 721.8 518 70.3
ECA248G2514 Erigeron canadensis HOM05D005743 ORTHO05D007031 2.4e-205 719.2 493 74.6
Eucgr.K03488 Eucalyptus grandis HOM05D005743 ORTHO05D007031 5.4e-205 718.0 475 74.9
CDE02G2026 Ceratophyllum demersum HOM05D005743 ORTHO05D007031 3.9e-203 711.8 526 68.8
Sc05g0003780 Simmondsia chinensis HOM05D005743 ORTHO05D007031 8.7e-203 710.7 523 70.2
Actinidia24820 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.9e-202 709.5 487 75.2
EL10Ac7g17510 Beta vulgaris HOM05D005743 ORTHO05D007031 1.9e-202 709.5 519 70.5
Ah.08g213420 Amaranthus hybridus HOM05D005743 ORTHO05D007031 4.3e-202 708.4 526 69.2
BcaB02g08759 Brassica carinata HOM05D005743 ORTHO05D007031 8.1e-193 677.6 542 64.6
RcHm_v2.0_Chr6g0294081 Rosa chinensis HOM05D005743 ORTHO05D007031 1.8e-192 676.4 533 65.5
Haze_04942 Corylus avellana HOM05D005743 ORTHO05D007031 1.3e-185 653.7 601 62.9
Lalb_Chr06g0166491 Lupinus albus HOM05D005743 ORTHO05D007031 4.8e-185 651.7 550 63.1
Nn4g25787 Nelumbo nucifera HOM05D005743 ORTHO05D007031 5.0e-182 641.7 410 78.8
SGA_v2.0_scaffold1G00362 Striga asiatica HOM05D005743 ORTHO05D007031 1.9e-181 639.8 496 68.1
FAN27G1322 Fragaria x ananassa HOM05D005743 ORTHO05D007031 3.9e-171 605.5 407 74.2
Psat6g165240 Pisum sativum HOM05D005743 ORTHO05D007031 2.4e-168 596.3 412 73.3
Nitab4.5_0001879g0130 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.4e-144 517.3 558 53.6
Peaxi162Scf00001g04234 Petunia axillaris HOM05D005743 ORTHO05D007031 4.2e-141 505.8 547 54.8
vmacro15016 Vaccinium macrocarpon HOM05D005743 ORTHO05D007031 8.6e-126 454.9 352 67.9
AagrBONN_evm.TU.Sc2ySwM_344.5359 Anthoceros agrestis HOM05D005743 ORTHO05D007031 1.9e-117 427.2 534 44.6
Gohir.A11G114301 Gossypium hirsutum HOM05D005743 ORTHO05D007031 1.3e-113 414.5 291 73.2
Mapoly0134s0038 Marchantia polymorpha HOM05D005743 ORTHO05D007031 3.5e-111 406.4 522 43.9
Pp3c1_39250 Physcomitrium patens HOM05D005743 ORTHO05D007031 1.7e-110 404.1 574 42.3
CiPaw.08G094900 Carya illinoinensis HOM05D005743 ORTHO05D007031 1.9e-109 400.6 291 69.8
Hund18173 Selenicereus undatus HOM05D005743 ORTHO05D007031 6.8e-107 392.1 267 74.9
ATR0706G014 Amborella trichopoda HOM05D005743 ORTHO05D007031 2.6e-106 390.2 264 73.5
Pp3c2_6060 Physcomitrium patens HOM05D005743 ORTHO05D007031 3.5e-103 379.8 553 41.0
Zm00001eb165450 Zea mays HOM05D005743 ORTHO05D007031 3.5e-103 379.8 321 62.6
AagrBONN_evm.TU.Sc2ySwM_368.1084 Anthoceros agrestis HOM05D005743 ORTHO05D007031 6.9e-99 365.5 546 38.8
SMO351G0556 Selaginella moellendorffii HOM05D005743 ORTHO05D007031 4.2e-88 329.7 424 43.2
CBR_g22437 Chara braunii HOM05D005743 ORTHO05D007031 8.7e-78 295.4 621 33.0
Actinidia26720 Actinidia chinensis HOM05D005743 ORTHO05D007031 4.3e-77 293.1 315 54.9
THA.LOC104798829 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 2.0e-74 284.3 191 74.3
Nitab4.5_0002433g0030 Nicotiana tabacum HOM05D005743 ORTHO05D007031 2.1e-71 274.2 288 56.2
Os02g0644900 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 1.2e-63 248.4 223 59.6
SEGI_24798 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 4.2e-56 223.4 162 69.1
EL10Ac3g06395 Beta vulgaris HOM05D005743 ORTHO05D007031 1.4e-54 218.4 152 70.4
Actinidia21045 Actinidia chinensis HOM05D005743 ORTHO05D007031 7.7e-50 202.6 100 94.0
PRCOL_00004461 Prasinoderma coloniale HOM05D005743 ORTHO05D007031 1.6e-47 194.9 699 25.6
Zm00001eb407450 Zea mays HOM05D005743 ORTHO05D007031 2.3e-46 191.0 174 56.9
SEGI_13510 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 7.7e-42 176.0 115 75.7
Rhsim05G0173900 Rhododendron simsii HOM05D005743 ORTHO05D007031 1.7e-41 174.9 132 70.5
Actinidia21044 Actinidia chinensis HOM05D005743 ORTHO05D007031 5.5e-40 169.9 121 71.9
Nitab4.5_0002433g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 6.5e-33 146.4 97 73.2
Cre11.g479600 Chlamydomonas reinhardtii HOM05D005743 ORTHO05D007031 5.9e-26 123.2 179 39.7
Glyma.02G017550 Glycine max HOM05D005743 ORTHO05D007031 1.7e-25 121.7 77 80.5
SEGI_31813 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 1.7e-20 105.1 96 57.3
SEGI_40223 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 1.8e-19 101.7 101 56.4
ATR0706G260 Amborella trichopoda HOM05D005743 ORTHO05D007031 1.2e-15 89.0 51 86.3
PRCOL_00000753 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 1.7e-09 68.6 151 31.8
Medtr7g112660 Medicago truncatula HOM05D005743 ORTHO05D007031 1.5e-08 65.5 52 69.2
MCO03G398 Micromonas commoda HOM05D018879 ORTHO05D018932 1.8e-06 58.5 370 23.5
Medtr3g062620 Medicago truncatula HOM05D005743 ORTHO05D007031 2.3e-06 58.2 40 75.0


User provided reference genes

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