Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 1.9e-159 565.8 296 100.0
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 2.6e-153 545.4 296 97.6
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 5.7e-132 474.6 297 85.5
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 7.5e-108 394.4 293 76.1
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 8.9e-101 370.9 299 67.9
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.5e-100 370.2 297 70.0
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 9.9e-100 367.5 297 69.7
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 3.9e-96 355.5 296 67.9
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 8.6e-96 354.4 302 65.9
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 3.3e-95 352.4 268 70.9
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 5.6e-95 351.7 300 65.3
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 5.6e-95 351.7 267 70.4
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 9.9e-92 340.9 268 69.8
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 1.7e-91 340.1 232 77.2
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 3.8e-91 339.0 231 76.6
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 5.4e-90 335.1 228 76.8
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 7.1e-90 334.7 221 78.3
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 1.2e-89 334.0 279 66.7
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 1.2e-89 334.0 228 76.3
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 1.6e-89 333.6 231 74.5
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 3.5e-89 332.4 231 74.5
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 4.6e-89 332.0 242 72.7
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 4.6e-89 332.0 308 62.7
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 4.6e-89 332.0 234 74.8
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 7.8e-89 331.3 228 75.9
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 1.0e-88 330.9 234 73.9
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 1.3e-88 330.5 306 60.1
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 1.7e-88 330.1 318 61.0
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 1.7e-88 330.1 308 62.3
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 2.3e-88 329.7 221 77.4
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 3.0e-88 329.3 228 74.6
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 3.9e-88 328.9 230 75.7
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 6.6e-88 328.2 236 71.6
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 1.1e-87 327.4 266 66.5
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.5e-87 326.2 239 72.4
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.5e-87 326.2 239 72.4
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.5e-87 326.2 228 75.4
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 3.3e-87 325.9 228 74.6
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 3.3e-87 325.9 228 76.3
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 4.3e-87 325.5 224 76.3
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 4.3e-87 325.5 221 76.9
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 4.3e-87 325.5 228 75.0
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 4.3e-87 325.5 238 73.1
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 1.6e-86 323.6 235 72.3
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 2.8e-86 322.8 221 76.9
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 3.6e-86 322.4 235 71.1
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 4.8e-86 322.0 235 72.3
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 4.8e-86 322.0 228 74.6
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 6.2e-86 321.6 223 76.7
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 8.1e-86 321.2 230 73.0
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 8.1e-86 321.2 228 75.9
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 8.1e-86 321.2 215 77.7
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 1.1e-85 320.9 230 73.0
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 1.4e-85 320.5 269 65.8
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 1.4e-85 320.5 234 70.9
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 1.8e-85 320.1 223 73.5
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.8e-85 320.1 298 63.8
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 1.8e-85 320.1 229 72.9
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 2.4e-85 319.7 231 72.7
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 2.4e-85 319.7 231 73.2
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 4.0e-85 318.9 215 75.8
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 4.0e-85 318.9 231 72.7
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 5.3e-85 318.5 314 63.4
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 6.9e-85 318.2 231 71.9
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 6.9e-85 318.2 234 70.9
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 9.0e-85 317.8 312 58.7
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 9.0e-85 317.8 228 74.1
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 1.5e-84 317.0 231 73.2
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 1.5e-84 317.0 285 62.1
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 2.0e-84 316.6 223 74.0
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 2.0e-84 316.6 223 74.0
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 2.6e-84 316.2 235 71.5
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 3.4e-84 315.8 231 71.9
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 4.5e-84 315.5 223 73.5
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 4.5e-84 315.5 223 73.5
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 4.5e-84 315.5 236 71.2
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 4.5e-84 315.5 231 72.3
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 5.8e-84 315.1 255 64.7
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 5.8e-84 315.1 291 60.1
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 7.6e-84 314.7 260 67.3
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 7.6e-84 314.7 253 68.4
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 7.6e-84 314.7 232 71.1
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 7.6e-84 314.7 224 72.8
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 9.9e-84 314.3 236 69.5
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 9.9e-84 314.3 236 70.3
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 1.7e-83 313.5 220 74.5
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 1.7e-83 313.5 227 70.9
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 2.2e-83 313.2 273 63.4
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 2.2e-83 313.2 231 71.4
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 2.9e-83 312.8 223 73.1
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 3.8e-83 312.4 288 60.1
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 3.8e-83 312.4 234 70.9
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 4.9e-83 312.0 234 70.1
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 8.4e-83 311.2 222 73.0
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 1.1e-82 310.8 235 70.2
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 1.1e-82 310.8 222 74.8
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 1.4e-82 310.5 239 69.5
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 1.4e-82 310.5 237 70.0
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 1.4e-82 310.5 296 60.8
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 4.2e-82 308.9 224 73.2
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 5.4e-82 308.5 224 73.2
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 9.3e-82 307.8 231 69.7
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 1.2e-81 307.4 291 60.5
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 1.6e-81 307.0 232 69.8
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 2.1e-81 306.6 235 69.8
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 2.7e-81 306.2 222 71.6
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 3.5e-81 305.8 230 69.6
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 4.6e-81 305.4 225 71.1
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 4.6e-81 305.4 224 74.1
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 4.6e-81 305.4 235 70.2
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 6.0e-81 305.1 303 60.7
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.0e-80 304.3 230 69.1
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 1.3e-80 303.9 230 70.9
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 1.1e-79 300.8 265 62.3
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 2.6e-76 289.7 260 61.2
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 5.8e-76 288.5 228 66.2
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 2.9e-75 286.2 223 68.6
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 6.4e-75 285.0 235 65.1
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 1.4e-74 283.9 218 68.3
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 3.5e-73 279.3 220 67.7
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 4.6e-73 278.9 228 66.7
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 1.0e-72 277.7 218 66.1
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 8.7e-72 274.6 229 62.9
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 1.1e-71 274.2 236 62.7
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 1.1e-69 267.7 177 75.1
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 3.1e-69 266.2 177 80.2
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 2.7e-65 253.1 222 64.0
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 8.7e-64 248.1 343 47.2
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 1.6e-62 243.8 186 73.1
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 6.3e-62 241.9 190 68.9
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 2.1e-57 226.9 264 49.6
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 2.1e-57 226.9 264 49.6
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.0e-56 224.6 208 62.0
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 1.1e-55 221.1 155 74.2
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 3.3e-55 219.5 161 72.7
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 4.3e-55 219.2 175 68.6
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 9.7e-55 218.0 186 63.4
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.6e-54 217.2 190 64.7
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.2e-54 216.9 173 67.6
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 2.4e-53 213.4 166 69.9
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 2.0e-52 210.3 220 56.8
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 1.3e-51 207.6 169 68.0
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 3.8e-51 206.1 184 60.9
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 1.2e-49 201.1 195 55.9
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 9.7e-47 191.4 185 56.2
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 5.9e-44 182.2 238 48.7
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 1.1e-39 167.9 161 57.1
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 4.8e-30 136.0 68 98.5
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 7.0e-29 132.1 242 37.2
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 5.9e-28 129.0 258 36.4
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 8.3e-22 108.6 207 36.7
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 1.7e-19 100.9 197 35.5
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 9.8e-15 85.1 256 32.8
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 1.3e-14 84.7 235 30.6
Nitab4.5_0000780g0100 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.9e-11 73.6 168 36.9
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 1.9e-10 70.9 41 75.6
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 5.6e-10 69.3 63 61.9
RcHm_v2.0_Chr5g0074611 Rosa chinensis HOM05D004368 ORTHO05D004990 1.0e-08 65.1 66 53.0
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 2.3e-08 63.9 46 71.7
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.7e-06 57.8 41 65.9
MCO15G457 Micromonas commoda HOM05D004368 ORTHO05D268172 4.9e-06 56.2 181 29.3


User provided reference genes

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