Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g002680 Solanum pennellii HOM05D006799 ORTHO05D008391 5.8e-101 370.9 191 100.0
Solyc06g007800.4 Solanum lycopersicum HOM05D006799 ORTHO05D008391 3.2e-99 365.2 191 97.9
PGSC0003DMG400022033 Solanum tuberosum HOM05D006799 ORTHO05D008391 1.7e-97 359.4 191 95.3
CAN.G181.54 Capsicum annuum HOM05D006799 ORTHO05D008391 4.1e-91 338.2 189 91.5
Nitab4.5_0002641g0110 Nicotiana tabacum HOM05D006799 ORTHO05D008391 5.6e-88 327.8 191 87.4
Nitab4.5_0002616g0150 Nicotiana tabacum HOM05D006799 ORTHO05D008391 5.2e-86 321.2 215 80.0
Peaxi162Scf00068g02310 Petunia axillaris HOM05D006799 ORTHO05D008391 4.6e-82 308.1 190 81.6
Nitab4.5_0000045g0540 Nicotiana tabacum HOM05D006799 ORTHO05D008391 1.2e-79 300.1 186 80.6
Hma1.2p1_0226F.1_g095380 Hydrangea macrophylla HOM05D006799 ORTHO05D008391 2.5e-72 275.8 185 75.7
Dinv12648 Davidia involucrata HOM05D006799 ORTHO05D008391 3.6e-71 271.9 198 71.2
Cc01_g16700 Coffea canephora HOM05D006799 ORTHO05D008391 2.4e-70 269.2 186 72.6
SGA_v2.0_scaffold6G03220 Striga asiatica HOM05D006799 ORTHO05D008391 3.1e-70 268.9 189 72.5
TAR362G0955 Trochodendron aralioides HOM05D006799 ORTHO05D008391 2.2e-68 262.7 190 68.9
CSS0002557 Camellia sinensis var. sinensis HOM05D006799 ORTHO05D008391 3.8e-68 261.9 187 68.4
Actinidia23709 Actinidia chinensis HOM05D006799 ORTHO05D008391 6.4e-68 261.2 187 70.1
MSTRG.17994 Avicennia marina HOM05D006799 ORTHO05D008391 5.4e-67 258.1 176 72.2
Rhsim01G0253200 Rhododendron simsii HOM05D006799 ORTHO05D008391 5.4e-67 258.1 187 72.2
Haze_15251 Corylus avellana HOM05D006799 ORTHO05D008391 1.6e-66 256.5 174 71.8
SalBow3G4070 Salvia bowleyana HOM05D006799 ORTHO05D008391 1.6e-66 256.5 189 67.7
CsaV3_7G026360 Cucumis sativus L. HOM05D006799 ORTHO05D008391 6.0e-66 254.6 178 69.7
Lj1C89G17 Lonicera japonica HOM05D006799 ORTHO05D008391 2.3e-65 252.7 177 70.1
ClCG09G008610 Citrullus lanatus HOM05D006799 ORTHO05D008391 3.0e-65 252.3 194 66.5
Potri.002G246000 Populus trichocarpa HOM05D006799 ORTHO05D008391 5.1e-65 251.5 167 74.3
Ciclev10022385m.g Citrus clementina HOM05D006799 ORTHO05D008391 8.7e-65 250.8 182 69.8
Dinv19171 Davidia involucrata HOM05D006799 ORTHO05D008391 1.1e-64 250.4 168 75.0
GSVIVG01003251001 Vitis vinifera HOM05D006799 ORTHO05D008391 4.3e-64 248.4 169 71.6
TWI18G0944 Tripterygium wilfordii HOM05D006799 ORTHO05D008391 1.3e-63 246.9 181 69.1
CiPaw.02G023800 Carya illinoinensis HOM05D006799 ORTHO05D008391 2.1e-63 246.1 181 68.5
Atru.chr6.1426 Acer truncatum HOM05D006799 ORTHO05D008391 6.2e-63 244.6 190 69.5
Gohir.A07G093200 Gossypium hirsutum HOM05D006799 ORTHO05D008391 6.2e-63 244.6 176 70.5
MELO3C021082.2 Cucumis melo HOM05D006799 ORTHO05D008391 8.1e-63 244.2 204 62.3
QL09p051225 Quercus lobata HOM05D006799 ORTHO05D008391 8.1e-63 244.2 180 65.6
Gorai.001G105200 Gossypium raimondii HOM05D006799 ORTHO05D008391 1.4e-62 243.4 187 68.4
Sabra02G0187300 Salix brachista HOM05D006799 ORTHO05D008391 1.4e-62 243.4 193 65.3
Cpa.g.sc21.107 Carica papaya HOM05D006799 ORTHO05D008391 1.8e-62 243.0 174 70.7
Gohir.D07G097800 Gossypium hirsutum HOM05D006799 ORTHO05D008391 1.8e-62 243.0 187 68.4
vmacro14734 Vaccinium macrocarpon HOM05D006799 ORTHO05D008391 2.4e-62 242.7 234 57.3
Sed0008494 Sechium edule HOM05D006799 ORTHO05D008391 3.1e-62 242.3 180 66.1
Duzib138G1661 Durio zibethinus HOM05D006799 ORTHO05D008391 4.0e-62 241.9 176 72.2
Migut.N00632 Erythranthe guttata HOM05D006799 ORTHO05D008391 4.0e-62 241.9 189 63.0
Thecc.01G219900 Theobroma cacao HOM05D006799 ORTHO05D008391 1.2e-61 240.4 185 66.5
Cfa004160 Carpinus fangiana HOM05D006799 ORTHO05D008391 3.4e-61 238.8 198 62.1
Sc17g0002120 Simmondsia chinensis HOM05D006799 ORTHO05D008391 3.4e-61 238.8 189 67.7
COL.COLO4_15616 Corchorus olitorius HOM05D006799 ORTHO05D008391 2.2e-60 236.1 185 64.9
MD05G1171500 Malus domestica HOM05D006799 ORTHO05D008391 4.9e-60 235.0 186 65.6
MD10G1159700 Malus domestica HOM05D006799 ORTHO05D008391 4.9e-60 235.0 183 63.9
Manes.13G049500 Manihot esculenta HOM05D006799 ORTHO05D008391 4.9e-60 235.0 181 66.9
DCAR_012670 Daucus carota HOM05D006799 ORTHO05D008391 8.4e-60 234.2 191 66.0
Prupe.8G198800 Prunus persica HOM05D006799 ORTHO05D008391 1.1e-59 233.8 181 65.2
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 5.5e-59 231.5 184 64.1
Aqoxy5G00028 Aquilegia oxysepala HOM05D006799 ORTHO05D008391 7.1e-59 231.1 195 62.1
Hund05578 Selenicereus undatus HOM05D006799 ORTHO05D008391 1.2e-58 230.3 181 65.7
FvH4_2g18530 Fragaria vesca HOM05D006799 ORTHO05D008391 2.7e-58 229.2 184 63.6
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 2.7e-58 229.2 184 63.6
EL10Ac5g12475 Beta vulgaris HOM05D006799 ORTHO05D008391 4.6e-58 228.4 179 63.1
Lsat_1_v5_gn_8_89340 Lactuca sativa HOM05D006799 ORTHO05D008391 7.9e-58 227.6 181 61.9
VMungo0331G1591 Vigna mungo HOM05D006799 ORTHO05D008391 7.9e-58 227.6 185 62.2
Glyma.17G151300 Glycine max HOM05D006799 ORTHO05D008391 1.3e-57 226.9 185 62.7
RcHm_v2.0_Chr6g0284091 Rosa chinensis HOM05D006799 ORTHO05D008391 1.8e-57 226.5 196 60.2
PGR044G2699 Punica granatum HOM05D006799 ORTHO05D008391 3.0e-57 225.7 182 65.4
ECA236G1739 Erigeron canadensis HOM05D006799 ORTHO05D008391 8.7e-57 224.2 184 60.9
Eucgr.K02137 Eucalyptus grandis HOM05D006799 ORTHO05D008391 2.5e-56 222.6 161 68.9
CANSAT01G3095 Cannabis sativa HOM05D006799 ORTHO05D008391 4.3e-56 221.9 180 63.9
AUR62019885 Chenopodium quinoa HOM05D006799 ORTHO05D008391 9.6e-56 220.7 166 64.5
unitig_0.g374 Utricularia gibba HOM05D006799 ORTHO05D008391 1.3e-55 220.3 166 63.9
Peaxi162Scf00372g01214 Petunia axillaris HOM05D006799 ORTHO05D008391 6.2e-55 218.0 117 93.2
AUR62007023 Chenopodium quinoa HOM05D006799 ORTHO05D008391 1.1e-54 217.2 179 61.5
Psat4g203520 Pisum sativum HOM05D006799 ORTHO05D008391 1.4e-54 216.9 180 61.1
arahy.Tifrunner.gnm1.ann1.AR5NL3 Arachis hypogaea HOM05D006799 ORTHO05D008391 3.1e-54 215.7 176 63.1
TPR.G11194 Trifolium pratense HOM05D006799 ORTHO05D008391 1.5e-53 213.4 193 59.1
arahy.Tifrunner.gnm1.ann1.H272JM Arachis hypogaea HOM05D006799 ORTHO05D008391 4.5e-53 211.8 176 61.9
Medtr8g012725 Medicago truncatula HOM05D006799 ORTHO05D008391 5.8e-53 211.5 171 63.2
Phvul.010G021800 Phaseolus vulgaris HOM05D006799 ORTHO05D008391 7.6e-53 211.1 186 58.6
PSO063G5306 Papaver somniferum HOM05D006799 ORTHO05D008391 8.4e-52 207.6 177 60.5
MBI11_g07417_MAGBIO Magnolia biondii HOM05D006799 ORTHO05D008391 1.9e-51 206.5 181 58.6
THA.LOC104804623 Tarenaya hassleriana HOM05D006799 ORTHO05D008391 4.2e-51 205.3 179 62.6
Lj3g0009647 Lotus japonicus HOM05D006799 ORTHO05D008391 9.3e-51 204.1 184 58.2
Lalb_Chr12g0209871 Lupinus albus HOM05D006799 ORTHO05D008391 4.6e-50 201.8 167 62.3
CDE05G2155 Ceratophyllum demersum HOM05D006799 ORTHO05D008391 3.9e-49 198.7 181 55.2
Aa31LG9G5010 Aethionema arabicum HOM05D006799 ORTHO05D008391 2.5e-48 196.1 179 60.3
Ca_23225_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 1.8e-46 189.9 163 60.7
Os04g0376100 Oryza sativa ssp. japonica HOM05D006799 ORTHO05D008391 3.1e-46 189.1 179 54.7
CARHR101440 Cardamine hirsuta HOM05D006799 ORTHO05D008391 1.5e-45 186.8 167 58.7
Carub.0003s2545 Capsella rubella HOM05D006799 ORTHO05D008391 2.6e-45 186.0 167 59.9
HanXRQChr16g0500591 Helianthus annuus HOM05D006799 ORTHO05D008391 2.6e-45 186.0 183 54.1
AT3G25120 Arabidopsis thaliana HOM05D006799 ORTHO05D008391 2.9e-44 182.6 167 59.9
AL3G40810 Arabidopsis lyrata HOM05D006799 ORTHO05D008391 6.5e-44 181.4 167 59.3
Thhalv10002682m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 4.2e-43 178.7 167 58.7
ATR0561G177 Amborella trichopoda HOM05D006799 ORTHO05D008391 1.6e-42 176.8 173 54.3
A07p07240 Brassica napus HOM05D006799 ORTHO05D008391 6.1e-42 174.9 167 57.5
CARHR218390 Cardamine hirsuta HOM05D006799 ORTHO05D008391 7.9e-42 174.5 176 54.0
BcaC06g35782 Brassica carinata HOM05D006799 ORTHO05D008391 1.3e-41 173.7 167 56.9
A04p08990 Brassica napus HOM05D006799 ORTHO05D008391 1.3e-41 173.7 167 57.5
BolC4t25853H Brassica oleracea HOM05D006799 ORTHO05D008391 1.3e-41 173.7 167 57.5
BraA04t16594Z Brassica rapa HOM05D006799 ORTHO05D008391 1.3e-41 173.7 167 57.5
BraA07t28510Z Brassica rapa HOM05D006799 ORTHO05D008391 1.8e-41 173.3 167 57.5
BcaB03g16157 Brassica carinata HOM05D006799 ORTHO05D008391 3.0e-41 172.6 190 52.6
BcaC02g09450 Brassica carinata HOM05D006799 ORTHO05D008391 3.0e-41 172.6 191 51.8
C04p42860 Brassica napus HOM05D006799 ORTHO05D008391 1.1e-40 170.6 191 51.8
Ah.12g052960 Amaranthus hybridus HOM05D006799 ORTHO05D008391 2.5e-40 169.5 179 52.0
BolC7t41559H Brassica oleracea HOM05D006799 ORTHO05D008391 3.3e-40 169.1 168 56.5
Sp3g22710 Schrenkiella parvula HOM05D006799 ORTHO05D008391 4.3e-40 168.7 167 55.1
C07p10930 Brassica napus HOM05D006799 ORTHO05D008391 7.4e-40 167.9 168 56.0
Zm00001eb086040 Zea mays HOM05D006799 ORTHO05D008391 2.8e-39 166.0 211 45.0
BcaB06g26722 Brassica carinata HOM05D006799 ORTHO05D008391 2.2e-36 156.4 167 53.9
Sc17g0002130 Simmondsia chinensis HOM05D006799 ORTHO05D008391 1.5e-32 143.7 103 70.9
Thhalv10026882m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 2.6e-32 142.9 163 50.3
SEGI_12663 Sequoiadendron giganteum HOM05D006799 ORTHO05D008391 1.7e-31 140.2 183 42.1
FAN27G1455 Fragaria x ananassa HOM05D006799 ORTHO05D008391 2.8e-31 139.4 124 60.5
arahy.Tifrunner.gnm1.ann1.9RT6YB Arachis hypogaea HOM05D006799 ORTHO05D008391 1.7e-28 130.2 100 65.0
Mapoly0010s0131 Marchantia polymorpha HOM05D006799 ORTHO05D008391 1.1e-22 110.9 171 44.4
Rhsim01G0253100 Rhododendron simsii HOM05D006799 ORTHO05D008391 1.9e-19 100.1 96 56.2
AagrBONN_evm.TU.Sc2ySwM_228.181 Anthoceros agrestis HOM05D006799 ORTHO05D008391 2.1e-18 96.7 185 35.1
Pp3c22_13870 Physcomitrium patens HOM05D006799 ORTHO05D008391 1.4e-17 94.0 191 33.5
CBR_g52029 Chara braunii HOM05D006799 ORTHO05D008391 2.9e-12 76.3 116 36.2
Ca_19566_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 3.7e-07 59.3 39 69.2
SMO337G0092 Selaginella moellendorffii HOM05D006799 ORTHO05D008391 2.4e-06 56.6 180 27.8


User provided reference genes

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