Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 8.3e-123 444.1 297 100.0
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 1.5e-119 433.3 296 93.6
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 1.1e-101 374.0 300 85.0
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 4.0e-101 372.1 303 81.8
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 1.5e-100 370.2 308 82.8
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 1.1e-93 347.4 296 72.3
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 1.4e-93 347.1 306 78.1
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 8.7e-88 327.8 304 79.3
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 5.6e-87 325.1 298 75.8
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 3.1e-85 319.3 300 70.3
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 4.5e-84 315.5 295 74.9
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 2.9e-83 312.8 301 65.1
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 2.9e-83 312.8 304 68.1
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 3.8e-83 312.4 313 62.0
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 7.1e-82 308.1 298 71.1
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 3.0e-80 302.8 294 71.4
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 6.7e-80 301.6 308 62.0
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 6.7e-80 301.6 292 67.1
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 1.9e-79 300.1 297 63.6
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 2.5e-79 299.7 301 66.1
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 3.3e-79 299.3 291 62.2
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 7.4e-79 298.1 307 61.2
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 1.3e-78 297.4 309 57.3
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 2.1e-78 296.6 307 60.9
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 2.1e-78 296.6 287 64.5
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 2.1e-78 296.6 287 64.5
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 2.1e-78 296.6 301 65.4
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 2.8e-78 296.2 290 67.6
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 3.7e-78 295.8 300 62.3
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 1.4e-77 293.9 298 64.8
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 1.4e-77 293.9 290 65.5
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 2.4e-77 293.1 301 65.8
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 3.1e-77 292.7 308 60.7
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 4.0e-77 292.4 297 65.3
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 5.3e-77 292.0 300 70.7
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 5.3e-77 292.0 300 63.7
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 6.9e-77 291.6 299 72.6
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 9.0e-77 291.2 302 63.9
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.2e-76 290.8 308 60.4
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 1.5e-76 290.4 295 67.8
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 2.6e-76 289.7 292 65.1
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 3.4e-76 289.3 300 70.3
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 7.6e-76 288.1 318 61.6
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 1.7e-75 287.0 299 69.6
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 2.9e-75 286.2 312 68.3
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 2.9e-75 286.2 313 59.1
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 3.8e-75 285.8 312 61.5
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 1.1e-74 284.3 304 64.1
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 1.1e-74 284.3 289 71.6
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 1.1e-74 284.3 289 71.6
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 2.5e-74 283.1 304 64.1
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 4.2e-74 282.3 302 68.2
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 9.3e-74 281.2 308 68.2
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.1e-73 280.0 320 60.0
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 2.7e-73 279.6 300 70.0
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 6.0e-73 278.5 311 65.0
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 1.3e-72 277.3 309 70.6
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 2.3e-72 276.6 299 67.6
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 2.3e-72 276.6 288 61.5
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 6.7e-72 275.0 315 64.4
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 6.7e-72 275.0 303 61.4
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.1e-71 274.2 312 60.6
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 2.5e-71 273.1 290 67.9
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 4.3e-71 272.3 301 63.8
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 4.3e-71 272.3 306 60.5
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 4.3e-71 272.3 292 62.7
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 5.7e-71 271.9 299 62.9
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 1.3e-70 270.8 299 70.6
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.3e-70 270.8 285 62.8
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.6e-70 270.4 300 57.0
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 2.2e-70 270.0 308 65.9
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 8.2e-70 268.1 314 62.1
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 1.4e-69 267.3 312 67.9
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 1.4e-69 267.3 316 67.7
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 3.1e-69 266.2 303 70.0
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 3.1e-69 266.2 311 60.1
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 3.1e-69 266.2 307 68.1
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 3.1e-69 266.2 306 59.8
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 4.1e-69 265.8 309 64.1
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 5.3e-69 265.4 303 57.1
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 1.5e-68 263.8 288 56.9
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 2.0e-68 263.5 297 64.3
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 2.0e-68 263.5 301 64.1
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 2.0e-68 263.5 306 64.1
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 2.6e-68 263.1 286 55.9
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 2.6e-68 263.1 312 60.6
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 4.5e-68 262.3 288 58.0
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 5.9e-68 261.9 287 61.0
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 7.7e-68 261.5 290 64.5
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 1.3e-67 260.8 300 66.3
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 2.9e-67 259.6 305 66.6
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 3.8e-67 259.2 291 66.0
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 5.0e-67 258.8 154 92.9
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 6.5e-67 258.5 314 54.8
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 1.1e-66 257.7 302 62.3
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 1.1e-66 257.7 302 61.6
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 1.1e-66 257.7 289 66.8
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 1.4e-66 257.3 308 65.9
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 1.4e-66 257.3 310 71.0
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 3.2e-66 256.1 317 61.5
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 4.2e-66 255.8 306 64.1
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 5.5e-66 255.4 312 66.0
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 7.2e-66 255.0 332 59.9
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 9.4e-66 254.6 312 62.8
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 9.4e-66 254.6 302 64.9
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 1.6e-65 253.8 312 57.7
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 2.1e-65 253.4 332 59.6
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 7.9e-65 251.5 286 66.8
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 1.8e-64 250.4 294 57.1
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 3.0e-64 249.6 315 65.4
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 3.0e-64 249.6 296 64.2
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 3.9e-64 249.2 307 59.0
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 1.5e-63 247.3 308 61.7
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 1.5e-63 247.3 300 56.7
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 4.3e-63 245.7 312 63.8
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 4.3e-63 245.7 301 54.8
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 4.3e-63 245.7 301 54.8
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 1.3e-62 244.2 294 54.4
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 2.2e-62 243.4 289 60.6
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 2.8e-62 243.0 288 63.2
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 8.2e-62 241.5 311 68.2
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 3.1e-61 239.6 288 64.9
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 5.3e-61 238.8 293 59.7
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 9.1e-61 238.0 334 56.0
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 2.2e-59 233.4 302 60.9
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 5.5e-58 228.8 343 55.4
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 2.3e-56 223.4 296 56.1
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 3.9e-56 222.6 229 67.7
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 6.7e-56 221.9 289 58.8
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 3.3e-55 219.5 389 46.0
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 2.8e-54 216.5 295 52.5
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 1.8e-53 213.8 283 57.6
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 7.0e-53 211.8 261 56.3
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 9.1e-53 211.5 293 52.6
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.5e-52 210.7 181 72.4
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 2.6e-52 209.9 288 57.3
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 2.6e-52 209.9 290 54.8
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 5.9e-52 208.8 296 55.7
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 4.2e-50 202.6 128 76.6
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 5.5e-50 202.2 144 71.5
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 1.5e-47 194.1 289 60.2
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 1.3e-46 191.0 299 51.5
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 4.1e-45 186.0 295 51.2
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 3.5e-44 183.0 125 69.6
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 7.7e-44 181.8 324 45.1
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 1.0e-43 181.4 147 63.3
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 5.0e-43 179.1 294 50.3
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 2.5e-42 176.8 135 65.2
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 3.2e-42 176.4 232 67.7
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 4.8e-38 162.5 273 49.1
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 2.7e-36 156.8 102 72.5
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 9.4e-34 148.3 205 55.1
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 1.1e-29 134.8 99 65.7
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 5.9e-28 129.0 333 48.3
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.7e-27 127.5 81 81.5
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 5.0e-27 125.9 77 84.4
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 7.2e-26 122.1 296 41.6
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 9.5e-26 121.7 121 67.8
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 1.2e-25 121.3 331 46.2
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 6.1e-25 119.0 176 56.2
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 2.3e-24 117.1 203 66.5
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 4.0e-24 116.3 315 44.4
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 6.8e-24 115.5 320 45.6
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 2.4e-21 107.1 183 47.0
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.2e-20 104.8 118 57.6
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 1.3e-19 101.3 80 65.0
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 7.3e-18 95.5 77 67.5
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 9.5e-18 95.1 80 57.5
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 1.2e-17 94.7 109 49.5
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.1e-17 94.0 79 64.6
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 2.8e-17 93.6 76 67.1
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 3.6e-17 93.2 73 67.1
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 4.4e-15 86.3 80 55.0
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 5.8e-15 85.9 79 59.5
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 9.8e-15 85.1 64 62.5
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 4.6e-12 76.3 45 84.4
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 3.1e-08 63.5 78 51.3
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.5e-07 61.2 78 48.7
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 2.0e-07 60.8 263 45.2
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 3.4e-07 60.1 78 48.7
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 1.7e-06 57.8 67 50.7
Zm00001eb392350 Zea mays HOM05D000367 ORTHO05D001438 4.9e-06 56.2 44 68.2
SEGI_25865 Sequoiadendron giganteum HOM05D000010 ORTHO05D004484 8.3e-06 55.5 78 46.2


User provided reference genes

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