Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g002500 Solanum pennellii HOM05D004226 ORTHO05D004842 3.2e-84 315.1 162 100.0
Solyc06g007610.2 Solanum lycopersicum HOM05D004226 ORTHO05D004842 2.7e-83 312.0 162 99.4
PGSC0003DMG400020653 Solanum tuberosum HOM05D004226 ORTHO05D004842 8.7e-74 280.4 162 90.7
PGSC0003DMG400027348 Solanum tuberosum HOM05D004226 ORTHO05D004842 5.3e-63 244.6 162 77.8
Sopen11g003480 Solanum pennellii HOM05D004226 ORTHO05D004842 3.8e-61 238.4 162 75.9
MSTRG.18494 Avicennia marina HOM05D004226 ORTHO05D004842 4.6e-43 178.3 162 58.6
Nitab4.5_0009151g0020 Nicotiana tabacum HOM05D004226 ORTHO05D004842 6.1e-43 177.9 166 62.7
Nitab4.5_0000038g0150 Nicotiana tabacum HOM05D004226 ORTHO05D004842 7.9e-43 177.6 165 61.8
Nitab4.5_0002167g0150 Nicotiana tabacum HOM05D004226 ORTHO05D004842 1.5e-41 173.3 164 60.4
Nitab4.5_0002311g0050 Nicotiana tabacum HOM05D004226 ORTHO05D004842 2.0e-41 172.9 166 59.6
Cc01_g16140 Coffea canephora HOM05D004226 ORTHO05D004842 2.5e-41 172.6 161 59.6
Peaxi162Scf00372g00004 Petunia axillaris HOM05D004226 ORTHO05D004842 5.7e-41 171.4 158 60.8
Lsat_1_v5_gn_8_98041 Lactuca sativa HOM05D004226 ORTHO05D004842 3.7e-40 168.7 164 57.9
MSTRG.21303 Avicennia marina HOM05D004226 ORTHO05D004842 4.8e-40 168.3 163 58.3
Dinv28812 Davidia involucrata HOM05D004226 ORTHO05D004842 6.3e-40 167.9 163 58.9
Migut.N00664 Erythranthe guttata HOM05D004226 ORTHO05D004842 6.3e-40 167.9 166 56.6
Actinidia23795 Actinidia chinensis HOM05D004226 ORTHO05D004842 8.2e-40 167.5 161 56.5
Oeu003656.1 Olea europaea HOM05D004226 ORTHO05D004842 1.1e-39 167.2 158 61.4
CiPaw.13G055300 Carya illinoinensis HOM05D004226 ORTHO05D004842 2.4e-39 166.0 160 59.4
Haze_03501 Corylus avellana HOM05D004226 ORTHO05D004842 3.1e-39 165.6 160 56.2
Lj2A1117T18 Lonicera japonica HOM05D004226 ORTHO05D004842 5.3e-39 164.9 159 60.4
vmacro02815 Vaccinium macrocarpon HOM05D004226 ORTHO05D004842 5.3e-39 164.9 161 58.4
CAN.G181.39 Capsicum annuum HOM05D004226 ORTHO05D004842 1.5e-38 163.3 146 61.0
Cfa010569 Carpinus fangiana HOM05D004226 ORTHO05D004842 4.5e-38 161.8 160 55.0
Rhsim13G0052600 Rhododendron simsii HOM05D004226 ORTHO05D004842 1.7e-37 159.8 161 57.1
ECA236G1737 Erigeron canadensis HOM05D004226 ORTHO05D004842 2.2e-37 159.5 163 54.6
Eucgr.H00726 Eucalyptus grandis HOM05D004226 ORTHO05D004842 2.9e-37 159.1 158 56.3
Actinidia34543 Actinidia chinensis HOM05D004226 ORTHO05D004842 5.0e-37 158.3 160 55.0
SGA_v2.0_scaffold624G53238 Striga asiatica HOM05D004226 ORTHO05D004842 6.5e-37 157.9 161 55.9
Dinv10439 Davidia involucrata HOM05D004226 ORTHO05D004842 9.4e-36 154.1 162 54.3
Duzib138G1045 Durio zibethinus HOM05D004226 ORTHO05D004842 9.4e-36 154.1 161 55.3
Hma1.2p1_0781F.1_g216920 Hydrangea macrophylla HOM05D004226 ORTHO05D004842 2.1e-35 152.9 175 52.6
HanXRQChr16g0507911 Helianthus annuus HOM05D004226 ORTHO05D004842 2.7e-35 152.5 163 53.4
Actinidia30018 Actinidia chinensis HOM05D004226 ORTHO05D004842 4.7e-35 151.8 161 56.5
Duzib133G0243 Durio zibethinus HOM05D004226 ORTHO05D004842 4.7e-35 151.8 161 54.7
Phvul.008G136900 Phaseolus vulgaris HOM05D004226 ORTHO05D004842 4.7e-35 151.8 160 54.4
SGA_v2.0_scaffold29G12070 Striga asiatica HOM05D004226 ORTHO05D004842 4.7e-35 151.8 189 48.1
HanXRQChr08g0231431 Helianthus annuus HOM05D004226 ORTHO05D004842 7.9e-35 151.0 163 51.5
SGA_v2.0_scaffold8G04494 Striga asiatica HOM05D004226 ORTHO05D004842 7.9e-35 151.0 162 53.7
Gohir.A11G142500 Gossypium hirsutum HOM05D004226 ORTHO05D004842 1.0e-34 150.6 161 52.8
vmacro14692 Vaccinium macrocarpon HOM05D004226 ORTHO05D004842 1.0e-34 150.6 158 53.8
Gohir.D11G148800 Gossypium hirsutum HOM05D004226 ORTHO05D004842 1.4e-34 150.2 161 52.8
HanXRQChr09g0257641 Helianthus annuus HOM05D004226 ORTHO05D004842 1.4e-34 150.2 161 56.5
Lj1g0015941 Lotus japonicus HOM05D004226 ORTHO05D004842 3.0e-34 149.1 161 54.7
Lalb_Chr01g0021991 Lupinus albus HOM05D004226 ORTHO05D004842 3.0e-34 149.1 159 53.5
Lalb_Chr03g0041091 Lupinus albus HOM05D004226 ORTHO05D004842 3.0e-34 149.1 159 54.1
Manes.12G054100 Manihot esculenta HOM05D004226 ORTHO05D004842 3.0e-34 149.1 161 50.9
DCAR_012646 Daucus carota HOM05D004226 ORTHO05D004842 3.9e-34 148.7 159 54.7
Gorai.007G159600 Gossypium raimondii HOM05D004226 ORTHO05D004842 5.1e-34 148.3 161 52.8
ECA247G2547 Erigeron canadensis HOM05D004226 ORTHO05D004842 1.5e-33 146.7 143 55.9
Hund09468 Selenicereus undatus HOM05D004226 ORTHO05D004842 2.6e-33 146.0 163 53.4
CANSAT01G0104 Cannabis sativa HOM05D004226 ORTHO05D004842 3.3e-33 145.6 163 53.4
TAR633G1997 Trochodendron aralioides HOM05D004226 ORTHO05D004842 3.3e-33 145.6 150 55.3
VMungo1383G2422 Vigna mungo HOM05D004226 ORTHO05D004842 1.3e-32 143.7 162 53.1
Aqoxy2G03959 Aquilegia oxysepala HOM05D004226 ORTHO05D004842 4.8e-32 141.7 157 52.2
Glyma.08G344200 Glycine max HOM05D004226 ORTHO05D004842 6.3e-32 141.4 161 50.3
Psat3g151000 Pisum sativum HOM05D004226 ORTHO05D004842 8.2e-32 141.0 159 51.6
CSS0019192 Camellia sinensis var. sinensis HOM05D004226 ORTHO05D004842 1.1e-31 140.6 122 61.5
ClCG05G015470 Citrullus lanatus HOM05D004226 ORTHO05D004842 1.1e-31 140.6 163 51.5
TAR362G0792 Trochodendron aralioides HOM05D004226 ORTHO05D004842 1.4e-31 140.2 153 54.2
Hund02794 Selenicereus undatus HOM05D004226 ORTHO05D004842 1.8e-31 139.8 157 54.1
Oeu057834.2 Olea europaea HOM05D000039 ORTHO05D005440 2.4e-31 139.4 145 55.9
Thecc.01G211100 Theobroma cacao HOM05D004226 ORTHO05D004842 2.4e-31 139.4 161 50.3
TAR365G1191 Trochodendron aralioides HOM05D004226 ORTHO05D004842 2.4e-31 139.4 152 53.9
Ah.11g051030 Amaranthus hybridus HOM05D004226 ORTHO05D004842 4.1e-31 138.7 164 50.0
EL10Ac5g10626 Beta vulgaris HOM05D004226 ORTHO05D004842 4.1e-31 138.7 159 52.2
DCAR_018624 Daucus carota HOM05D004226 ORTHO05D004842 5.3e-31 138.3 158 50.6
Medtr7g052690 Medicago truncatula HOM05D004226 ORTHO05D004842 9.1e-31 137.5 162 50.6
Glyma.18G152900 Glycine max HOM05D004226 ORTHO05D004842 1.2e-30 137.1 161 50.3
Ciclev10016998m.g Citrus clementina HOM05D004226 ORTHO05D004842 1.6e-30 136.7 159 50.3
QL09p046251 Quercus lobata HOM05D004226 ORTHO05D004842 2.0e-30 136.3 165 49.1
Potri.002G251200 Populus trichocarpa HOM05D004226 ORTHO05D004842 1.3e-29 133.7 158 51.3
PGR083G1064 Punica granatum HOM05D004226 ORTHO05D004842 1.3e-29 133.7 154 50.6
TPR.G26804 Trifolium pratense HOM05D004226 ORTHO05D004842 1.7e-29 133.3 159 50.3
Nn1g08255 Nelumbo nucifera HOM05D004226 ORTHO05D004842 2.9e-29 132.5 169 49.1
TWI36G1598 Tripterygium wilfordii HOM05D004226 ORTHO05D004842 2.9e-29 132.5 162 50.0
MELO3C003732.2 Cucumis melo HOM05D004226 ORTHO05D004842 3.8e-29 132.1 162 48.1
Rhsim01G0248500 Rhododendron simsii HOM05D004226 ORTHO05D004842 3.8e-29 132.1 158 48.7
THA.LOC104802646 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 5.0e-29 131.7 155 47.7
TWI18G1341 Tripterygium wilfordii HOM05D004226 ORTHO05D004842 6.5e-29 131.3 161 49.1
AUR62028700 Chenopodium quinoa HOM05D004226 ORTHO05D004842 2.5e-28 129.4 161 49.7
Migut.D00735 Erythranthe guttata HOM05D004226 ORTHO05D004842 2.5e-28 129.4 161 50.3
DCAR_004767 Daucus carota HOM05D004226 ORTHO05D004842 3.2e-28 129.0 156 48.1
THA.LOC104818997 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 4.2e-28 128.6 160 48.8
Cpa.g.sc8.73 Carica papaya HOM05D004226 ORTHO05D004842 1.2e-27 127.1 157 45.2
PSO017G4362 Papaver somniferum HOM05D004226 ORTHO05D004842 1.2e-27 127.1 148 49.3
PSO675G4654 Papaver somniferum HOM05D004226 ORTHO05D004842 1.2e-27 127.1 148 49.3
CsaV3_3G046080 Cucumis sativus L. HOM05D004226 ORTHO05D004842 1.6e-27 126.7 141 49.6
CDE05G1161 Ceratophyllum demersum HOM05D004226 ORTHO05D004842 3.6e-27 125.6 159 47.2
Sc17g0001670 Simmondsia chinensis HOM05D004226 ORTHO05D004842 4.7e-27 125.2 138 51.4
Sed0006210 Sechium edule HOM05D004226 ORTHO05D004842 6.1e-27 124.8 163 49.7
THA.LOC104822467 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 1.8e-26 123.2 162 46.3
Sabra02G0191000 Salix brachista HOM05D004226 ORTHO05D004842 2.3e-26 122.9 182 42.9
AUR62008122 Chenopodium quinoa HOM05D004226 ORTHO05D004842 3.0e-26 122.5 156 49.4
Migut.D00732 Erythranthe guttata HOM05D004226 ORTHO05D004842 4.0e-26 122.1 162 48.1
COL.COLO4_26572 Corchorus olitorius HOM05D004226 ORTHO05D004842 8.8e-26 120.9 161 48.4
Gohir.A07G090200 Gossypium hirsutum HOM05D004226 ORTHO05D004842 5.7e-25 118.2 140 49.3
Aa31sc186G10 Aethionema arabicum HOM05D004226 ORTHO05D004842 2.2e-24 116.3 161 42.2
SEGI_00481 Sequoiadendron giganteum HOM05D004226 ORTHO05D004842 2.2e-24 116.3 161 41.6
Gohir.D07G094900 Gossypium hirsutum HOM05D004226 ORTHO05D004842 2.8e-24 115.9 140 48.6
Gorai.001G102200 Gossypium raimondii HOM05D004226 ORTHO05D004842 2.8e-24 115.9 140 48.6
Lj3g0009756 Lotus japonicus HOM05D004226 ORTHO05D004842 3.7e-24 115.5 134 50.7
Sp2g18850 Schrenkiella parvula HOM05D004226 ORTHO05D004842 1.1e-23 114.0 164 44.5
Thhalv10005050m.g Eutrema salsugineum HOM05D004226 ORTHO05D004842 2.4e-23 112.8 157 43.3
HPP92_024259 Vanilla planifolia HOM05D004226 ORTHO05D004842 4.1e-23 112.1 165 44.2
A06p39150 Brassica napus HOM05D004226 ORTHO05D004842 5.3e-23 111.7 161 41.0
ATR0686G035 Amborella trichopoda HOM05D004226 ORTHO05D004842 1.2e-22 110.5 149 46.3
BraA06t26830Z Brassica rapa HOM05D004226 ORTHO05D004842 2.7e-22 109.4 161 39.8
Mapoly0001s0501 Marchantia polymorpha HOM05D004226 ORTHO05D004842 3.5e-22 109.0 159 40.3
BolC7t44438H Brassica oleracea HOM05D004226 ORTHO05D004842 1.3e-21 107.1 143 42.0
BcaC06g30793 Brassica carinata HOM05D004226 ORTHO05D004842 1.7e-21 106.7 161 40.4
CDE05G0628 Ceratophyllum demersum HOM05D004226 ORTHO05D004842 2.9e-21 105.9 126 50.0
Lj3g0001126 Lotus japonicus HOM05D004226 ORTHO05D004842 3.8e-21 105.5 136 49.3
A09p04540 Brassica napus HOM05D004226 ORTHO05D004842 6.5e-21 104.8 162 42.0
BraA09t36089Z Brassica rapa HOM05D004226 ORTHO05D004842 6.5e-21 104.8 162 42.0
Prupe.8G190400 Prunus persica HOM05D004226 ORTHO05D004842 1.1e-20 104.0 159 44.0
C09p04850 Brassica napus HOM05D004226 ORTHO05D004842 1.5e-20 103.6 147 42.2
SMO146G0354 Selaginella moellendorffii HOM05D004226 ORTHO05D004842 1.5e-20 103.6 130 49.2
Ca_07469_v3 Cicer arietinum L. HOM05D004226 ORTHO05D004842 1.9e-20 103.2 94 61.7
Ca_30573_v3 Cicer arietinum L. HOM05D004226 ORTHO05D004842 1.9e-20 103.2 94 61.7
BcaC03g17654 Brassica carinata HOM05D004226 ORTHO05D004842 7.2e-20 101.3 144 42.4
C07p39180 Brassica napus HOM05D004226 ORTHO05D004842 1.2e-19 100.5 145 40.7
BolC2t11714H Brassica oleracea HOM05D004226 ORTHO05D004842 3.6e-19 99.0 144 40.3
C02p56560 Brassica napus HOM05D004226 ORTHO05D004842 6.1e-19 98.2 144 40.3
A02p37490 Brassica napus HOM05D004226 ORTHO05D004842 1.8e-18 96.7 143 39.9
SHI10249 Sapria himalayana HOM05D004226 ORTHO05D004842 1.8e-18 96.7 137 42.3
BcaC04g23773 Brassica carinata HOM05D004226 ORTHO05D004842 2.3e-18 96.3 163 39.3
BolC9t53412H Brassica oleracea HOM05D004226 ORTHO05D004842 2.3e-18 96.3 163 39.3
Carub.0008s0806 Capsella rubella HOM05D004226 ORTHO05D004842 6.8e-18 94.7 141 42.6
BraA02t08736Z Brassica rapa HOM05D004226 ORTHO05D004842 1.2e-17 94.0 144 39.6
Duzib170G0075 Durio zibethinus HOM05D004226 ORTHO05D004842 3.4e-17 92.4 136 44.1
Duzib168G0485 Durio zibethinus HOM05D004226 ORTHO05D004842 9.8e-17 90.9 135 42.2
MD10G1152100 Malus domestica HOM05D004226 ORTHO05D004842 2.2e-16 89.7 161 33.5
Duzib205G0826 Durio zibethinus HOM05D004226 ORTHO05D004842 2.8e-16 89.4 146 41.1
AT5G48480 Arabidopsis thaliana HOM05D004226 ORTHO05D004842 4.8e-16 88.6 148 39.2
AL8G21330 Arabidopsis lyrata HOM05D004226 ORTHO05D004842 5.4e-15 85.1 133 39.8
Duzib138G0271 Durio zibethinus HOM05D004226 ORTHO05D004842 7.0e-15 84.7 134 41.0
FvH4_2g17810 Fragaria vesca HOM05D004226 ORTHO05D004842 7.0e-15 84.7 158 43.7
MD05G1159600 Malus domestica HOM05D004226 ORTHO05D004842 7.0e-15 84.7 167 32.9
FAN15G3314 Fragaria x ananassa HOM05D004226 ORTHO05D004842 9.1e-15 84.3 158 43.0
FAN24G0678 Fragaria x ananassa HOM05D004226 ORTHO05D004842 9.1e-15 84.3 158 43.7
Atru.chr6.3547 Acer truncatum HOM05D004226 ORTHO05D004842 1.6e-14 83.6 121 43.0
CARHR183600 Cardamine hirsuta HOM05D004226 ORTHO05D004842 2.0e-14 83.2 162 37.0
BcaB07g30025 Brassica carinata HOM05D004226 ORTHO05D004842 2.7e-14 82.8 142 38.7
Sc19g0005500 Simmondsia chinensis HOM05D004226 ORTHO05D004842 3.5e-14 82.4 77 58.4
FAN27G2858 Fragaria x ananassa HOM05D004226 ORTHO05D004842 5.9e-14 81.6 158 43.0
FAN27G3147 Fragaria x ananassa HOM05D004226 ORTHO05D004842 5.9e-14 81.6 158 43.0
RcHm_v2.0_Chr6g0282841 Rosa chinensis HOM05D004226 ORTHO05D004842 5.9e-14 81.6 156 41.7
Duzib211G0475 Durio zibethinus HOM05D004226 ORTHO05D004842 1.3e-13 80.5 134 38.8
Lj2P1154T27 Lonicera japonica HOM05D004226 ORTHO05D004842 8.5e-13 77.8 76 55.3
Psat0s337g0040 Pisum sativum HOM05D004226 ORTHO05D004842 1.5e-12 77.0 96 47.9
unitig_0.g1219 Utricularia gibba HOM05D004226 ORTHO05D004842 1.9e-12 76.6 79 50.6
Glyma.14G148600 Glycine max HOM05D004226 ORTHO05D004842 2.1e-11 73.2 71 53.5
Cfa011865 Carpinus fangiana HOM05D004226 ORTHO05D004842 1.0e-10 70.9 78 48.7
Pp3c13_5750 Physcomitrium patens HOM05D004226 ORTHO05D004842 8.8e-10 67.8 141 33.3
Duzib147G0221 Durio zibethinus HOM05D004226 ORTHO05D004842 2.0e-09 66.6 102 36.3
SGA_v2.0_scaffold85G26613 Striga asiatica HOM05D005727 ORTHO05D007324 2.8e-08 62.8 68 48.5
BcaB07g30020 Brassica carinata HOM05D004226 ORTHO05D004842 4.9e-08 62.0 106 38.7
SEGI_39221 Sequoiadendron giganteum HOM05D004226 ORTHO05D004842 6.3e-08 61.6 64 50.0
Nn4g25974 Nelumbo nucifera HOM05D066638 ORTHO05D004842 1.8e-07 60.1 56 57.1
Nn7g37465 Nelumbo nucifera HOM05D004226 ORTHO05D004842 9.2e-07 57.8 61 52.5
Nn7g37876 Nelumbo nucifera HOM05D001231 ORTHO05D001012 4.5e-06 55.5 55 54.5
SEGI_14551 Sequoiadendron giganteum HOM05D004226 ORTHO05D004842 5.9e-06 55.1 57 49.1
SEGI_24806 Sequoiadendron giganteum HOM05D004226 ORTHO05D004842 5.9e-06 55.1 57 49.1


User provided reference genes

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