Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g002410 Solanum pennellii HOM05D008739 ORTHO05D010871 1.3e-69 266.2 121 100.0
Peaxi162Scf00131g00137 Petunia axillaris HOM05D008739 ORTHO05D010871 4.4e-46 188.0 116 76.7
Migut.N00722 Erythranthe guttata HOM05D008739 ORTHO05D010871 7.0e-28 127.5 103 53.4
Thecc.10G185700 Theobroma cacao HOM05D008739 ORTHO05D010871 9.2e-28 127.1 109 53.2
PGR044G0285 Punica granatum HOM05D008739 ORTHO05D010871 5.0e-26 121.3 111 49.5
SalBow2G3501 Salvia bowleyana HOM05D008739 ORTHO05D010871 6.6e-26 120.9 96 54.2
COL.COLO4_19482 Corchorus olitorius HOM05D008739 ORTHO05D010871 1.9e-25 119.4 112 52.7
Ciclev10003504m.g Citrus clementina HOM05D008739 ORTHO05D010871 4.3e-25 118.2 92 58.7
Hma1.2p1_0161F.1_g072120 Hydrangea macrophylla HOM05D008739 ORTHO05D010871 1.6e-24 116.3 107 48.6
Potri.013G158300 Populus trichocarpa HOM05D008739 ORTHO05D010871 4.7e-24 114.8 105 50.5
ATR1127G131 Amborella trichopoda HOM05D008739 ORTHO05D010871 6.2e-24 114.4 110 49.1
Cpa.g.sc2.284 Carica papaya HOM05D008739 ORTHO05D010871 2.0e-22 109.4 101 49.5
DCAR_009469 Daucus carota HOM05D008739 ORTHO05D010871 3.4e-22 108.6 94 52.1
TPR.G28594 Trifolium pratense HOM05D008739 ORTHO05D010871 7.5e-22 107.5 106 50.0
Actinidia31640 Actinidia chinensis HOM05D008739 ORTHO05D010871 9.8e-22 107.1 109 45.0
Lsat_1_v5_gn_9_13661 Lactuca sativa HOM05D008739 ORTHO05D010871 1.3e-21 106.7 115 45.2
LjContig00141g0007680 Lotus japonicus HOM05D008739 ORTHO05D010871 3.7e-21 105.1 115 47.8
Manes.02G211000 Manihot esculenta HOM05D008739 ORTHO05D010871 3.7e-21 105.1 97 51.5
HanXRQChr08g0230271 Helianthus annuus HOM05D008739 ORTHO05D010871 4.9e-21 104.8 111 46.8
CiPaw.01G083500 Carya illinoinensis HOM05D008739 ORTHO05D010871 6.4e-21 104.4 97 49.5
Manes.10G109500 Manihot esculenta HOM05D008739 ORTHO05D010871 6.4e-21 104.4 97 50.5
Prupe.6G039900 Prunus persica HOM05D008739 ORTHO05D010871 5.4e-20 101.3 107 45.8
VMungo0647G0030 Vigna mungo HOM05D008739 ORTHO05D010871 1.6e-19 99.8 120 43.3
Actinidia23835 Actinidia chinensis HOM05D000032 ORTHO05D009914 2.0e-19 99.4 101 42.6
FvH4_3g40790 Fragaria vesca HOM05D008739 ORTHO05D010871 2.0e-19 99.4 110 46.4
FAN21G0180 Fragaria x ananassa HOM05D008739 ORTHO05D010871 2.0e-19 99.4 110 46.4
FAN21G0244 Fragaria x ananassa HOM05D008739 ORTHO05D010871 2.0e-19 99.4 110 46.4
Phvul.008G246200 Phaseolus vulgaris HOM05D008739 ORTHO05D010871 2.7e-19 99.0 119 45.4
MD11G1052300 Malus domestica HOM05D008739 ORTHO05D010871 4.6e-19 98.2 102 46.1
Duzib114G0462 Durio zibethinus HOM05D008739 ORTHO05D010871 1.0e-18 97.1 74 51.4
CiPaw.13G062800 Carya illinoinensis HOM05D008739 ORTHO05D010871 1.3e-18 96.7 89 50.6
FAN16G3503 Fragaria x ananassa HOM05D008739 ORTHO05D010871 1.3e-18 96.7 108 46.3
FAN11G3221 Fragaria x ananassa HOM05D008739 ORTHO05D010871 3.9e-18 95.1 108 45.4
Medtr5g075520 Medicago truncatula HOM05D008739 ORTHO05D010871 3.3e-17 92.0 106 42.5
RcHm_v2.0_Chr5g0073511 Rosa chinensis HOM05D008739 ORTHO05D010871 1.2e-16 90.1 110 43.6
arahy.Tifrunner.gnm1.ann1.E8Q4P5 Arachis hypogaea HOM05D008739 ORTHO05D010871 1.1e-15 87.0 105 40.0
arahy.Tifrunner.gnm1.ann1.KWYB1L Arachis hypogaea HOM05D008739 ORTHO05D010871 2.0e-14 82.8 105 38.1
Thecc.09G364600 Theobroma cacao HOM05D008739 ORTHO05D010871 3.4e-14 82.0 102 44.1
Haze_24478 Corylus avellana HOM05D000224 ORTHO05D002442 9.2e-12 73.9 80 45.0
COL.COLO4_11221 Corchorus olitorius HOM05D000224 ORTHO05D002442 1.2e-11 73.6 63 50.8
MBI15_g46028_MAGBIO Magnolia biondii HOM05D008739 ORTHO05D010871 7.3e-09 64.3 82 36.6
MBI15_g32296_MAGBIO Magnolia biondii HOM05D008739 ORTHO05D010871 2.8e-08 62.4 66 43.9
Thecc.05G321400 Theobroma cacao HOM05D002444 ORTHO05D004748 3.6e-08 62.0 98 38.8
Actinidia16853 Actinidia chinensis HOM05D002444 ORTHO05D004748 2.3e-07 59.3 90 37.8
COL.COLO4_04145 Corchorus olitorius HOM05D001136 ORTHO05D001144 2.3e-07 59.3 86 40.7
TAR362G0953 Trochodendron aralioides HOM05D002444 ORTHO05D004748 4.0e-07 58.5 75 42.7
FvH4_4g19330 Fragaria vesca HOM05D002444 ORTHO05D004748 6.8e-07 57.8 66 42.4
FAN12G1068 Fragaria x ananassa HOM05D002444 ORTHO05D004748 6.8e-07 57.8 66 42.4
C01p35210 Brassica napus HOM05D002444 ORTHO05D004748 8.9e-07 57.4 87 37.9
FAN07G2635 Fragaria x ananassa HOM05D002444 ORTHO05D004748 8.9e-07 57.4 66 40.9
FAN12G3242 Fragaria x ananassa HOM05D002444 ORTHO05D004748 8.9e-07 57.4 66 40.9
Manes.09G176000 Manihot esculenta HOM05D002444 ORTHO05D004748 8.9e-07 57.4 79 39.2
Migut.N00054 Erythranthe guttata HOM05D002444 ORTHO05D004748 1.2e-06 57.0 67 43.3
BcaC09g49563 Brassica carinata HOM05D002444 ORTHO05D004748 1.5e-06 56.6 82 39.0
A01p27390 Brassica napus HOM05D002444 ORTHO05D004748 1.5e-06 56.6 82 39.0
BolC1t03479H Brassica oleracea HOM05D001136 ORTHO05D004748 1.5e-06 56.6 82 39.0
BraA01t02879Z Brassica rapa HOM05D002444 ORTHO05D004748 1.5e-06 56.6 82 39.0
Sc19g0003190 Simmondsia chinensis HOM05D002444 ORTHO05D004748 2.0e-06 56.2 97 36.1
Sopen01g026460 Solanum pennellii HOM05D002444 ORTHO05D004748 2.0e-06 56.2 107 32.7
BcaB04g20158 Brassica carinata HOM05D002444 ORTHO05D004748 2.6e-06 55.8 82 39.0
Carub.0002s0784 Capsella rubella HOM05D002444 ORTHO05D004748 2.6e-06 55.8 82 39.0
CARHR289860 Cardamine hirsuta HOM05D002444 ORTHO05D004748 2.6e-06 55.8 82 36.6
Solyc01g060260.4 Solanum lycopersicum HOM05D002444 ORTHO05D004748 2.6e-06 55.8 107 32.7
arahy.Tifrunner.gnm1.ann1.1Z9C7T Arachis hypogaea HOM05D002444 ORTHO05D004748 3.4e-06 55.5 83 37.3
CSS0013068 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D004748 3.4e-06 55.5 103 35.0
QL03p018315 Quercus lobata HOM05D002444 ORTHO05D004748 3.4e-06 55.5 95 34.7
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 4.4e-06 55.1 66 40.9
PSO170G5203 Papaver somniferum HOM05D002444 ORTHO05D004748 4.4e-06 55.1 83 37.3
PSO210G2776 Papaver somniferum HOM05D002444 ORTHO05D004748 4.4e-06 55.1 67 41.8
PSO761G0121 Papaver somniferum HOM05D002444 ORTHO05D004748 4.4e-06 55.1 67 41.8
Ciclev10003857m.g Citrus clementina HOM05D002444 ORTHO05D004748 5.8e-06 54.7 98 33.7
AL1G65930 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 7.6e-06 54.3 82 37.8
ECA246G3411 Erigeron canadensis HOM05D002444 ORTHO05D004748 7.6e-06 54.3 67 38.8
MD13G1157600 Malus domestica HOM05D002444 ORTHO05D004748 7.6e-06 54.3 66 40.9
arahy.Tifrunner.gnm1.ann1.JXUF4U Arachis hypogaea HOM05D002444 ORTHO05D004748 9.9e-06 53.9 83 36.1
AUR62016142 Chenopodium quinoa HOM05D002444 ORTHO05D004748 9.9e-06 53.9 74 40.5
Sp2g06560 Schrenkiella parvula HOM05D002444 ORTHO05D004748 9.9e-06 53.9 82 37.8
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 9.9e-06 53.9 66 42.4


User provided reference genes

Program Settings