Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g002230 Solanum pennellii HOM05D005131 ORTHO05D006645 2.3e-187 658.7 321 100.0
Solyc06g007310.4 Solanum lycopersicum HOM05D005131 ORTHO05D006645 7.5e-186 653.7 321 99.1
PGSC0003DMG401020557 Solanum tuberosum HOM05D005131 ORTHO05D006645 6.3e-177 624.0 305 99.0
Actinidia37756 Actinidia chinensis HOM05D005131 ORTHO05D006645 7.3e-165 583.9 316 86.7
Nitab4.5_0012238g0010 Nicotiana tabacum HOM05D005131 ORTHO05D006645 1.8e-163 579.3 326 88.0
vmacro07486 Vaccinium macrocarpon HOM05D005131 ORTHO05D006645 1.1e-160 570.1 317 84.5
CiPaw.10G018800 Carya illinoinensis HOM05D005131 ORTHO05D006645 5.4e-160 567.8 318 83.6
CSS0022283 Camellia sinensis var. sinensis HOM05D005131 ORTHO05D006645 1.6e-159 566.2 314 85.4
GSVIVG01022599001 Vitis vinifera HOM05D005131 ORTHO05D006645 4.6e-159 564.7 314 84.4
Manes.09G044500 Manihot esculenta HOM05D005131 ORTHO05D006645 2.5e-157 558.9 319 81.5
PSO384G4687 Papaver somniferum HOM05D005131 ORTHO05D006645 9.5e-157 557.0 320 81.9
PSO339G6419 Papaver somniferum HOM05D005131 ORTHO05D006645 1.6e-156 556.2 320 82.2
EL10Ac5g11853 Beta vulgaris HOM05D005131 ORTHO05D006645 2.1e-156 555.8 319 83.1
Potri.016G068400 Populus trichocarpa HOM05D005131 ORTHO05D006645 2.1e-156 555.8 314 81.5
Ah.12g059320 Amaranthus hybridus HOM05D005131 ORTHO05D006645 3.6e-156 555.1 313 83.7
CsaV3_3G038080 Cucumis sativus L. HOM05D005131 ORTHO05D006645 4.7e-156 554.7 318 81.8
MSTRG.5889 Avicennia marina HOM05D005131 ORTHO05D006645 6.2e-156 554.3 315 81.9
Migut.J00690 Erythranthe guttata HOM05D005131 ORTHO05D006645 1.1e-155 553.5 315 82.9
TPR.G31287 Trifolium pratense HOM05D005131 ORTHO05D006645 1.4e-155 553.1 314 82.2
HanXRQChr13g0398521 Helianthus annuus HOM05D005131 ORTHO05D006645 1.8e-155 552.7 314 82.5
Sc22g0002890 Simmondsia chinensis HOM05D005131 ORTHO05D006645 1.8e-155 552.7 313 83.4
Glyma.19G200600 Glycine max HOM05D005131 ORTHO05D006645 3.1e-155 552.0 316 81.6
TWI74G0987 Tripterygium wilfordii HOM05D005131 ORTHO05D006645 4.0e-155 551.6 318 80.8
Manes.08G034500 Manihot esculenta HOM05D005131 ORTHO05D006645 1.5e-154 549.7 319 78.7
Aqoxy2G00625 Aquilegia oxysepala HOM05D005131 ORTHO05D006645 2.0e-154 549.3 321 81.6
Medtr7g106430 Medicago truncatula HOM05D005131 ORTHO05D006645 2.0e-154 549.3 314 81.2
Ciclev10012219m.g Citrus clementina HOM05D005131 ORTHO05D006645 2.6e-154 548.9 317 82.0
ClCG10G018240 Citrullus lanatus HOM05D005131 ORTHO05D006645 4.4e-154 548.1 320 81.6
Lj1g0022682 Lotus japonicus HOM05D005131 ORTHO05D006645 7.5e-154 547.4 313 81.2
RcHm_v2.0_Chr3g0476361 Rosa chinensis HOM05D005131 ORTHO05D006645 7.5e-154 547.4 314 81.2
Nn2g14347 Nelumbo nucifera HOM05D005131 ORTHO05D006645 1.3e-153 546.6 318 82.1
CARHR162160 Cardamine hirsuta HOM05D005131 ORTHO05D006645 1.7e-153 546.2 319 81.2
FAN05G1272 Fragaria x ananassa HOM05D005131 ORTHO05D006645 2.2e-153 545.8 314 80.6
FAN05G3424 Fragaria x ananassa HOM05D005131 ORTHO05D006645 2.9e-153 545.4 314 80.6
Prupe.7G093300 Prunus persica HOM05D005131 ORTHO05D006645 2.9e-153 545.4 314 82.2
BcaC02g09261 Brassica carinata HOM05D005131 ORTHO05D006645 3.7e-153 545.0 314 81.2
Gohir.D09G129600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 4.9e-153 544.7 318 80.5
Cc06_g06690 Coffea canephora HOM05D005131 ORTHO05D006645 6.4e-153 544.3 307 82.7
FvH4_6g20480 Fragaria vesca HOM05D005131 ORTHO05D006645 1.1e-152 543.5 314 79.6
QL07p027488 Quercus lobata HOM05D005131 ORTHO05D006645 2.4e-152 542.3 303 83.5
Hund10854 Selenicereus undatus HOM05D005131 ORTHO05D006645 5.4e-152 541.2 320 79.4
Thecc.05G106400 Theobroma cacao HOM05D005131 ORTHO05D006645 5.4e-152 541.2 318 81.8
VMungo1383G1979 Vigna mungo HOM05D005131 ORTHO05D006645 5.4e-152 541.2 314 80.3
Sp5g09900 Schrenkiella parvula HOM05D005131 ORTHO05D006645 9.2e-152 540.4 319 79.9
Ca_09063_v3 Cicer arietinum L. HOM05D005131 ORTHO05D006645 1.2e-151 540.0 314 80.3
CAN.G869.8 Capsicum annuum HOM05D005131 ORTHO05D006645 1.6e-151 539.7 273 94.9
Phvul.001G196500 Phaseolus vulgaris HOM05D005131 ORTHO05D006645 1.6e-151 539.7 316 79.7
PGR004G1515 Punica granatum HOM05D005131 ORTHO05D006645 1.6e-151 539.7 315 80.6
Haze_20155 Corylus avellana HOM05D005131 ORTHO05D006645 2.1e-151 539.3 301 84.4
Peaxi162Scf00012g02523 Petunia axillaris HOM05D005131 ORTHO05D006645 2.1e-151 539.3 321 83.2
AT3G52390 Arabidopsis thaliana HOM05D005131 ORTHO05D006645 2.7e-151 538.9 318 79.6
MD12G1041900 Malus domestica HOM05D005131 ORTHO05D006645 2.7e-151 538.9 313 81.2
AL5G33050 Arabidopsis lyrata HOM05D005131 ORTHO05D006645 3.5e-151 538.5 318 79.2
AUR62030719 Chenopodium quinoa HOM05D005131 ORTHO05D006645 7.8e-151 537.3 315 83.2
Aa31LG10G7440 Aethionema arabicum HOM05D005131 ORTHO05D006645 1.3e-150 536.6 321 78.2
Eucgr.A02573 Eucalyptus grandis HOM05D005131 ORTHO05D006645 1.7e-150 536.2 318 79.9
BcaB02g08573 Brassica carinata HOM05D005131 ORTHO05D006645 2.3e-150 535.8 307 81.4
Duzib128G0735 Durio zibethinus HOM05D005131 ORTHO05D006645 3.0e-150 535.4 318 79.9
Gorai.006G148500 Gossypium raimondii HOM05D005131 ORTHO05D006645 3.0e-150 535.4 311 80.7
Lsat_1_v5_gn_6_33480 Lactuca sativa HOM05D005131 ORTHO05D006645 3.0e-150 535.4 324 78.4
CANSAT64G0057 Cannabis sativa HOM05D005131 ORTHO05D006645 3.9e-150 535.0 316 79.4
Cpa.g.sc104.11 Carica papaya HOM05D005131 ORTHO05D006645 1.1e-149 533.5 302 83.4
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 2.8e-148 528.9 310 79.7
Haze_20150 Corylus avellana HOM05D005131 ORTHO05D006645 8.1e-148 527.3 302 82.8
THA.LOC104803758 Tarenaya hassleriana HOM05D005131 ORTHO05D006645 5.2e-147 524.6 313 78.9
Sed0026420 Sechium edule HOM05D005131 ORTHO05D006645 8.9e-147 523.9 301 80.7
Atru.chr8.1330 Acer truncatum HOM05D005131 ORTHO05D006645 1.5e-146 523.1 303 81.8
Lalb_Chr20g0111311 Lupinus albus HOM05D005131 ORTHO05D006645 5.8e-146 521.2 297 81.1
DCAR_009180 Daucus carota HOM05D005131 ORTHO05D006645 1.3e-145 520.0 305 80.3
Rhsim03G0063800 Rhododendron simsii HOM05D005131 ORTHO05D006645 1.3e-145 520.0 316 79.4
BraA04t16401Z Brassica rapa HOM05D005131 ORTHO05D006645 4.9e-145 518.1 309 79.0
Thhalv10010578m.g Eutrema salsugineum HOM05D005131 ORTHO05D006645 1.1e-144 516.9 302 80.5
C04p40630 Brassica napus HOM05D005131 ORTHO05D006645 1.4e-144 516.5 309 79.0
BolC4t25644H Brassica oleracea HOM05D005131 ORTHO05D006645 1.4e-144 516.5 309 79.0
Gohir.A09G133400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 2.4e-144 515.8 302 79.5
A04p07040 Brassica napus HOM05D005131 ORTHO05D006645 7.1e-144 514.2 308 78.6
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 1.2e-143 513.5 313 77.3
Carub.0005s1875 Capsella rubella HOM05D005131 ORTHO05D006645 7.8e-143 510.8 302 78.8
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 3.9e-142 508.4 291 81.4
COL.COLO4_29542 Corchorus olitorius HOM05D005131 ORTHO05D006645 9.6e-141 503.8 368 67.7
TAR636G0548 Trochodendron aralioides HOM05D005131 ORTHO05D006645 4.7e-140 501.5 284 83.8
Hund14967 Selenicereus undatus HOM05D005131 ORTHO05D006645 3.1e-139 498.8 300 80.0
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 1.4e-136 490.0 318 69.2
Zm00001eb117460 Zea mays HOM05D005131 ORTHO05D006645 3.2e-136 488.8 302 76.2
ATR0697G267 Amborella trichopoda HOM05D005131 ORTHO05D006645 2.1e-135 486.1 294 76.5
SHI18412 Sapria himalayana HOM05D005131 ORTHO05D006645 2.3e-134 482.6 313 70.6
CAN.G741.26 Capsicum annuum HOM05D005131 ORTHO05D006645 3.9e-134 481.9 277 86.3
FAN14G5766 Fragaria x ananassa HOM05D005131 ORTHO05D006645 1.1e-133 480.3 316 72.2
arahy.Tifrunner.gnm1.ann1.X3LXDK Arachis hypogaea HOM05D005131 ORTHO05D006645 5.6e-133 478.0 308 73.7
Nitab4.5_0000121g0080 Nicotiana tabacum HOM05D005131 ORTHO05D006645 2.0e-130 469.5 306 79.4
FAN02G0570 Fragaria x ananassa HOM05D005131 ORTHO05D006645 7.6e-130 467.6 270 80.0
Gohir.A09G012800 Gossypium hirsutum HOM05D005131 ORTHO05D006645 1.1e-128 463.8 262 81.3
Dinv12349 Davidia involucrata HOM05D005131 ORTHO05D006645 7.1e-128 461.1 247 85.4
Gohir.A13G054600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 4.6e-127 458.4 262 80.9
Mapoly0052s0020 Marchantia polymorpha HOM05D005131 ORTHO05D006645 7.9e-127 457.6 315 65.4
Oeu035639.1 Olea europaea HOM05D005131 ORTHO05D006645 2.5e-125 452.6 254 83.9
Gohir.A05G372400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 3.3e-125 452.2 262 80.5
AagrBONN_evm.TU.Sc2ySwM_117.2339 Anthoceros agrestis HOM05D005131 ORTHO05D006645 6.9e-123 444.5 308 67.2
Hma1.2p1_0079F.1_g041720 Hydrangea macrophylla HOM05D005131 ORTHO05D006645 1.2e-122 443.7 302 72.5
arahy.Tifrunner.gnm1.ann1.275XDC Arachis hypogaea HOM05D005131 ORTHO05D006645 3.8e-121 438.7 285 73.3
SMO334G0001 Selaginella moellendorffii HOM05D005131 ORTHO05D006645 4.0e-115 418.7 287 66.6
unitig_26.g9145 Utricularia gibba HOM05D005131 ORTHO05D006645 4.9e-113 411.8 258 76.7
AUR62036353 Chenopodium quinoa HOM05D005131 ORTHO05D006645 1.5e-109 400.2 232 82.8
MSTRG.18896 Avicennia marina HOM05D005131 ORTHO05D006645 5.9e-106 388.3 218 81.7
Pp3c11_16390 Physcomitrium patens HOM05D005131 ORTHO05D006645 1.3e-105 387.1 315 58.7
CBR_g41666 Chara braunii HOM05D005131 ORTHO05D006645 6.1e-103 378.3 316 58.2
MBI12_g38626_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 4.1e-99 365.5 210 80.5
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 5.7e-93 345.1 306 54.9
MCO14G398 Micromonas commoda HOM05D005131 ORTHO05D006645 3.0e-86 322.8 326 49.4
HPP92_012180 Vanilla planifolia HOM05D005131 ORTHO05D006645 2.9e-81 306.2 209 67.0
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 1.4e-78 297.4 298 52.7
HPP92_013927 Vanilla planifolia HOM05D005131 ORTHO05D006645 8.8e-78 294.7 182 74.7
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 5.7e-77 292.0 288 48.3
MELO3C009548.2 Cucumis melo HOM05D000492 ORTHO05D000499 1.0e-73 281.2 170 78.8
CDE09G0133 Ceratophyllum demersum HOM05D005131 ORTHO05D006645 6.1e-71 271.9 172 76.7
HPP92_026830 Vanilla planifolia HOM05D005131 ORTHO05D006645 2.6e-69 266.5 165 74.5
MELO3C031004.2 Cucumis melo HOM05D005131 ORTHO05D006645 1.6e-66 257.3 145 82.1
HPP92_013928 Vanilla planifolia HOM05D005131 ORTHO05D006645 5.2e-62 242.3 132 85.6
Zm00001eb419840 Zea mays HOM05D005131 ORTHO05D006645 2.6e-61 240.0 187 63.1
Lj7A140G6 Lonicera japonica HOM05D005131 ORTHO05D006645 1.9e-56 223.8 182 62.1
Zm00001eb002330 Zea mays HOM05D005131 ORTHO05D006645 5.8e-53 212.2 135 74.1
Sabra16G0069400 Salix brachista HOM05D005131 ORTHO05D006645 8.3e-52 208.4 117 78.6
Psat3g205680 Pisum sativum HOM05D005131 ORTHO05D006645 1.6e-50 204.1 114 81.6
Cc04_g12370 Coffea canephora HOM05D005131 ORTHO05D006645 3.6e-47 193.0 108 84.3
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 6.4e-44 182.2 124 71.8
MBI12_g38628_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 1.9e-43 180.6 104 83.7
Zm00001eb083350 Zea mays HOM05D005131 ORTHO05D006645 2.1e-39 167.2 118 66.9
arahy.Tifrunner.gnm1.ann1.Y0MH84 Arachis hypogaea HOM05D005131 ORTHO05D006645 1.2e-37 161.4 172 51.2
Zm00001eb324820 Zea mays HOM05D005131 ORTHO05D006645 7.6e-37 158.7 107 69.2
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 2.3e-33 147.1 324 34.6
HPP92_012178 Vanilla planifolia HOM05D005131 ORTHO05D006645 6.2e-31 139.0 106 64.2
Os08g0165800 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 8.1e-31 138.7 321 34.0
Psat0s6170g0080 Pisum sativum HOM05D005131 ORTHO05D006645 2.2e-28 130.6 95 70.5
Psat3g205720 Pisum sativum HOM05D005131 ORTHO05D006645 4.8e-23 112.8 71 77.5
Os07g0157900 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 2.0e-21 107.5 119 51.3
Zm00001eb429030 Zea mays HOM05D005131 ORTHO05D006645 4.2e-19 99.8 69 66.7
Zm00001eb324830 Zea mays HOM05D005131 ORTHO05D006645 1.2e-18 98.2 69 66.7
Pp3c7_11890 Physcomitrium patens HOM05D005131 ORTHO05D006645 1.7e-17 94.4 169 36.7
MD14G1041100 Malus domestica HOM05D005131 ORTHO05D006645 2.3e-17 94.0 302 28.8
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 2.0e-13 80.9 165 29.7
A01p30550 Brassica napus HOM05D005131 ORTHO05D033215 2.2e-12 77.4 42 78.6
BraA01t03187Z Brassica rapa HOM05D005131 ORTHO05D033215 2.2e-12 77.4 42 78.6
Zm00001eb392810 Zea mays HOM05D005131 ORTHO05D006645 2.2e-12 77.4 55 63.6
TAR633G0521 Trochodendron aralioides HOM05D005131 ORTHO05D006645 2.9e-12 77.0 49 69.4
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 6.4e-12 75.9 281 26.0
BolC1t02473H Brassica oleracea HOM05D005131 ORTHO05D033215 1.9e-11 74.3 40 80.0
CAN.G1767.1 Capsicum annuum HOM05D000162 ORTHO05D000090 2.4e-11 73.9 81 53.1
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 9.3e-11 72.0 262 28.6
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 6.0e-10 69.3 293 24.6
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 1.3e-09 68.2 312 26.9
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 1.8e-09 67.8 292 26.0
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.9e-09 66.6 273 24.5
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 5.1e-09 66.2 276 25.7
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 1.9e-08 64.3 295 25.4
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.3e-08 63.5 273 24.5
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.3e-08 63.5 272 24.3
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.3e-08 63.5 272 24.3
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 3.3e-08 63.5 198 26.3
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.3e-08 63.2 272 23.9
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.6e-08 62.8 272 23.5
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.6e-08 62.8 272 23.5
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 7.4e-08 62.4 272 23.9
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 7.4e-08 62.4 195 27.7
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 7.4e-08 62.4 121 33.9
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 1.3e-07 61.6 278 27.0
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 2.1e-07 60.8 299 21.7
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.1e-07 60.8 195 27.7
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 2.1e-07 60.8 285 24.9
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 3.7e-07 60.1 297 23.9
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.1e-06 58.5 202 27.7
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 1.4e-06 58.2 204 24.5
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 1.4e-06 58.2 234 24.8
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.4e-06 57.4 120 33.3
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 3.1e-06 57.0 199 26.6
FvH4_2g19461 Fragaria vesca HOM05D005131 ORTHO05D006645 5.3e-06 56.2 51 43.1
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 6.9e-06 55.8 129 33.3


User provided reference genes

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