Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g056560.3 Solanum lycopersicum HOM05D005902 ORTHO05D007182 1.3e-105 386.3 188 100.0
Sopen05g034960 Solanum pennellii HOM05D005902 ORTHO05D007182 1.3e-105 386.3 188 100.0
PGSC0003DMG400023318 Solanum tuberosum HOM05D005902 ORTHO05D007182 8.5e-105 383.6 188 98.9
CAN.G1464.8 Capsicum annuum HOM05D005902 ORTHO05D007182 2.1e-103 379.0 188 97.9
Nitab4.5_0017196g0010 Nicotiana tabacum HOM05D005902 ORTHO05D007182 2.3e-102 375.6 188 96.3
Nitab4.5_0000905g0130 Nicotiana tabacum HOM05D005902 ORTHO05D007182 5.7e-101 370.9 188 95.2
Peaxi162Scf00525g00623 Petunia axillaris HOM05D005902 ORTHO05D007182 3.7e-100 368.2 187 95.2
Haze_14303 Corylus avellana HOM05D005902 ORTHO05D007182 4.5e-98 361.3 188 91.5
Lj2A514T43 Lonicera japonica HOM05D005902 ORTHO05D007182 7.7e-98 360.5 188 92.0
CiPaw.03G078000 Carya illinoinensis HOM05D005902 ORTHO05D007182 1.0e-97 360.1 188 91.5
PGR031G2550 Punica granatum HOM05D005902 ORTHO05D007182 2.9e-97 358.6 189 90.5
Cfa007771 Carpinus fangiana HOM05D005902 ORTHO05D007182 6.5e-97 357.5 188 91.0
Cc07_g13000 Coffea canephora HOM05D005902 ORTHO05D007182 1.9e-96 355.9 189 89.9
MD17G1258000 Malus domestica HOM05D005902 ORTHO05D007182 7.2e-96 354.0 187 89.3
vmacro18518 Vaccinium macrocarpon HOM05D005902 ORTHO05D007182 9.4e-96 353.6 189 89.9
Actinidia35717 Actinidia chinensis HOM05D005902 ORTHO05D007182 7.9e-95 350.5 188 88.3
CSS0022144 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 7.9e-95 350.5 189 88.4
Dinv28227 Davidia involucrata HOM05D005902 ORTHO05D007182 1.4e-94 349.7 189 88.9
arahy.Tifrunner.gnm1.ann1.YJU2T0 Arachis hypogaea HOM05D005902 ORTHO05D007182 8.8e-94 347.1 191 89.0
Hma1.2p1_0158F.1_g069840 Hydrangea macrophylla HOM05D005902 ORTHO05D007182 8.8e-94 347.1 188 88.3
Rhsim08G0020200 Rhododendron simsii HOM05D005902 ORTHO05D007182 8.8e-94 347.1 189 87.8
RcHm_v2.0_Chr3g0493321 Rosa chinensis HOM05D005902 ORTHO05D007182 8.8e-94 347.1 188 87.8
TWI53G1594 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 8.8e-94 347.1 189 87.8
Lalb_Chr10g0104081 Lupinus albus HOM05D005902 ORTHO05D007182 1.1e-93 346.7 193 85.5
MD09G1263000 Malus domestica HOM05D005902 ORTHO05D007182 1.1e-93 346.7 188 86.7
Manes.05G062600 Manihot esculenta HOM05D005902 ORTHO05D007182 1.5e-93 346.3 189 87.8
arahy.Tifrunner.gnm1.ann1.00Q11I Arachis hypogaea HOM05D005902 ORTHO05D007182 2.0e-93 345.9 191 88.5
SalBow5G2060 Salvia bowleyana HOM05D005902 ORTHO05D007182 2.6e-93 345.5 190 88.4
MSTRG.15644 Avicennia marina HOM05D005902 ORTHO05D007182 3.3e-93 345.1 191 89.5
Nn3g18467 Nelumbo nucifera HOM05D005902 ORTHO05D007182 3.3e-93 345.1 189 86.2
FAN26G1601 Fragaria x ananassa HOM05D005902 ORTHO05D007182 5.7e-93 344.4 188 86.7
Lsat_1_v5_gn_8_111480 Lactuca sativa HOM05D005902 ORTHO05D007182 7.4e-93 344.0 192 88.5
Ciclev10005984m.g Citrus clementina HOM05D005902 ORTHO05D007182 9.7e-93 343.6 189 85.2
CsaV3_3G020300 Cucumis sativus L. HOM05D005902 ORTHO05D007182 9.7e-93 343.6 189 86.8
MSTRG.3687 Avicennia marina HOM05D005902 ORTHO05D007182 1.7e-92 342.8 191 89.0
MELO3C023753.2 Cucumis melo HOM05D005902 ORTHO05D007182 1.7e-92 342.8 189 86.8
FAN28G1805 Fragaria x ananassa HOM05D005902 ORTHO05D007182 2.2e-92 342.4 188 86.2
Oeu009432.1 Olea europaea HOM05D005902 ORTHO05D007182 2.8e-92 342.0 192 88.5
VMungo0647G1816 Vigna mungo HOM05D005902 ORTHO05D007182 2.8e-92 342.0 189 86.8
ClCG05G012140 Citrullus lanatus HOM05D005902 ORTHO05D007182 3.7e-92 341.7 189 86.8
FAN19G0020 Fragaria x ananassa HOM05D005902 ORTHO05D007182 3.7e-92 341.7 188 86.2
TPR.G9985 Trifolium pratense HOM05D005902 ORTHO05D007182 3.7e-92 341.7 191 85.9
Oeu048966.1 Olea europaea HOM05D005902 ORTHO05D007182 6.3e-92 340.9 192 88.5
DCAR_010066 Daucus carota HOM05D005902 ORTHO05D007182 8.2e-92 340.5 189 87.3
Prupe.3G160700 Prunus persica HOM05D005902 ORTHO05D007182 1.1e-91 340.1 188 85.1
Medtr5g077260 Medicago truncatula HOM05D005902 ORTHO05D007182 1.8e-91 339.3 191 84.8
Thecc.01G244600 Theobroma cacao HOM05D005902 ORTHO05D007182 2.4e-91 339.0 189 86.2
Ca_05775_v3 Cicer arietinum L. HOM05D005902 ORTHO05D007182 4.1e-91 338.2 191 83.2
Phvul.008G239100 Phaseolus vulgaris HOM05D005902 ORTHO05D007182 4.1e-91 338.2 190 85.8
GSVIVG01026316001 Vitis vinifera HOM05D005902 ORTHO05D007182 4.1e-91 338.2 191 85.9
Glyma.14G211800 Glycine max HOM05D005902 ORTHO05D007182 5.3e-91 337.8 188 85.6
HanXRQChr09g0259821 Helianthus annuus HOM05D005902 ORTHO05D007182 6.9e-91 337.4 192 88.0
TWI74G1040 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 6.9e-91 337.4 189 85.2
Glyma.02G242000 Glycine max HOM05D005902 ORTHO05D007182 1.2e-90 336.7 188 84.6
Lalb_Chr17g0345911 Lupinus albus HOM05D005902 ORTHO05D007182 1.2e-90 336.7 193 82.9
Psat2g044640 Pisum sativum HOM05D005902 ORTHO05D007182 1.2e-90 336.7 191 83.8
Sed0000187 Sechium edule HOM05D005902 ORTHO05D007182 1.2e-90 336.7 189 84.1
LjContig00141g0001362 Lotus japonicus HOM05D005902 ORTHO05D007182 2.6e-90 335.5 192 84.9
CANSAT80G0886 Cannabis sativa HOM05D005902 ORTHO05D007182 4.5e-90 334.7 193 83.9
Migut.K01111 Erythranthe guttata HOM05D005902 ORTHO05D007182 4.5e-90 334.7 191 84.8
SGA_v2.0_scaffold45G17133 Striga asiatica HOM05D005902 ORTHO05D007182 4.5e-90 334.7 191 85.9
QL02p060024 Quercus lobata HOM05D005902 ORTHO05D007182 7.7e-90 334.0 188 86.7
MBI13_g21692_MAGBIO Magnolia biondii HOM05D005902 ORTHO05D007182 1.3e-89 333.2 189 82.5
TAR371G0118 Trochodendron aralioides HOM05D005902 ORTHO05D007182 1.3e-89 333.2 189 83.1
Atru.chr1.1947 Acer truncatum HOM05D005902 ORTHO05D007182 2.2e-89 332.4 189 84.1
Duzib187G0521 Durio zibethinus HOM05D005902 ORTHO05D007182 5.0e-89 331.3 189 85.2
Hund03335 Selenicereus undatus HOM05D005902 ORTHO05D007182 6.5e-89 330.9 190 83.7
Aqoxy3G04009 Aquilegia oxysepala HOM05D005902 ORTHO05D007182 1.4e-88 329.7 190 82.1
PSO063G5475 Papaver somniferum HOM05D005902 ORTHO05D007182 1.9e-88 329.3 189 81.5
EL10Ac2g03874 Beta vulgaris HOM05D005902 ORTHO05D007182 2.5e-88 328.9 190 81.6
Gohir.D12G002400 Gossypium hirsutum HOM05D005902 ORTHO05D007182 2.5e-88 328.9 189 84.1
Potri.004G082100 Populus trichocarpa HOM05D005902 ORTHO05D007182 4.2e-88 328.2 189 81.5
ECA240G4510 Erigeron canadensis HOM05D005902 ORTHO05D007182 5.5e-88 327.8 194 82.5
THA.LOC104822070 Tarenaya hassleriana HOM05D005902 ORTHO05D007182 5.5e-88 327.8 192 82.8
unitig_748.g7250 Utricularia gibba HOM05D005902 ORTHO05D007182 5.5e-88 327.8 188 84.0
Aa31LG2G2820 Aethionema arabicum HOM05D005902 ORTHO05D007182 7.2e-88 327.4 191 82.7
BraA07t30938Z Brassica rapa HOM05D005902 ORTHO05D007182 9.4e-88 327.0 191 84.3
Gohir.A12G002700 Gossypium hirsutum HOM05D005902 ORTHO05D007182 1.2e-87 326.6 189 83.6
Cpa.g.sc178.4 Carica papaya HOM05D005902 ORTHO05D007182 1.6e-87 326.2 189 81.5
Duzib264G0381 Durio zibethinus HOM05D005902 ORTHO05D007182 1.6e-87 326.2 189 83.1
C06p39370 Brassica napus HOM05D005902 ORTHO05D007182 2.7e-87 325.5 191 84.3
AUR62009143 Chenopodium quinoa HOM05D005902 ORTHO05D007182 3.6e-87 325.1 189 82.0
BcaC08g46080 Brassica carinata HOM05D005902 ORTHO05D007182 6.1e-87 324.3 191 84.3
BolC6t39030H Brassica oleracea HOM05D005902 ORTHO05D007182 6.1e-87 324.3 191 84.3
BcaB03g15295 Brassica carinata HOM05D005902 ORTHO05D007182 7.9e-87 323.9 188 84.0
A07p33100 Brassica napus HOM05D005902 ORTHO05D007182 7.9e-87 323.9 191 83.8
PSO782G1752 Papaver somniferum HOM05D005902 ORTHO05D007182 1.0e-86 323.6 189 81.0
Sabra04G0054600 Salix brachista HOM05D005902 ORTHO05D007182 1.0e-86 323.6 189 80.4
BcaB05g24153 Brassica carinata HOM05D005902 ORTHO05D007182 1.4e-86 323.2 191 83.8
AUR62039116 Chenopodium quinoa HOM05D005902 ORTHO05D007182 1.4e-86 323.2 189 81.0
A02p13450 Brassica napus HOM05D005902 ORTHO05D007182 2.3e-86 322.4 191 83.8
BraA02t06403Z Brassica rapa HOM05D005902 ORTHO05D007182 2.3e-86 322.4 191 83.8
C02p21750 Brassica napus HOM05D005902 ORTHO05D007182 3.0e-86 322.0 191 83.8
Thhalv10019182m.g Eutrema salsugineum HOM05D005902 ORTHO05D007182 3.0e-86 322.0 191 82.2
Gorai.008G001800 Gossypium raimondii HOM05D005902 ORTHO05D007182 1.1e-85 320.1 184 83.7
Sed0027099 Sechium edule HOM05D005902 ORTHO05D007182 7.4e-85 317.4 188 83.5
COL.COLO4_08161 Corchorus olitorius HOM05D005902 ORTHO05D007182 9.7e-85 317.0 178 86.0
Sc09g0004530 Simmondsia chinensis HOM05D005902 ORTHO05D007182 1.3e-84 316.6 192 79.7
AL2G23690 Arabidopsis lyrata HOM05D005902 ORTHO05D007182 2.8e-84 315.5 191 80.1
AT1G66080 Arabidopsis thaliana HOM05D005902 ORTHO05D007182 3.7e-84 315.1 191 80.1
Carub.0002s1207 Capsella rubella HOM05D005902 ORTHO05D007182 3.7e-84 315.1 191 80.6
CARHR058040 Cardamine hirsuta HOM05D005902 ORTHO05D007182 4.8e-84 314.7 191 79.6
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 1.2e-82 310.1 188 77.7
CDE05G1035 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 3.5e-82 308.5 188 76.6
ATR0598G055 Amborella trichopoda HOM05D005902 ORTHO05D007182 7.7e-82 307.4 189 76.7
CDE05G2622 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 1.7e-81 306.2 188 76.6
TAR629G3091 Trochodendron aralioides HOM05D005902 ORTHO05D007182 9.4e-72 273.9 156 84.0
AagrBONN_evm.TU.Sc2ySwM_344.787 Anthoceros agrestis HOM05D005902 ORTHO05D007182 4.0e-70 268.5 191 67.0
SMO278G0026 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 4.0e-70 268.5 186 65.1
Ah.10g034300 Amaranthus hybridus HOM05D005902 ORTHO05D007182 5.2e-70 268.1 156 80.8
Sp5g21150 Schrenkiella parvula HOM05D005902 ORTHO05D007182 2.2e-68 262.7 158 82.3
FvH4_1g28840 Fragaria vesca HOM05D005902 ORTHO05D007182 2.8e-68 262.3 145 86.9
CSS0046217 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 1.3e-65 253.4 147 83.0
Mapoly0006s0187 Marchantia polymorpha HOM05D005902 ORTHO05D007182 1.7e-65 253.1 189 63.5
Pp3c27_3020 Physcomitrium patens HOM05D005902 ORTHO05D007182 1.7e-65 253.1 190 64.2
Pp3c16_2230 Physcomitrium patens HOM05D005902 ORTHO05D007182 6.8e-62 241.1 190 62.1
Pp3c3_23430 Physcomitrium patens HOM05D005902 ORTHO05D007182 2.5e-56 222.6 183 54.6
Pp3c10_12120 Physcomitrium patens HOM05D005902 ORTHO05D007182 5.6e-56 221.5 183 54.6
HPP92_002287 Vanilla planifolia HOM05D005902 ORTHO05D007182 2.1e-55 219.5 149 71.8
SMO367G0342 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 4.7e-55 218.4 190 51.1
CBR_g54208 Chara braunii HOM05D005902 ORTHO05D007182 4.4e-53 211.8 189 56.1
CSS0023311 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 6.4e-52 208.0 182 62.1
Mapoly0001s0397 Marchantia polymorpha HOM05D005902 ORTHO05D007182 2.7e-50 202.6 186 52.7
CBR_g54207 Chara braunii HOM05D005902 ORTHO05D007182 2.5e-48 196.1 181 53.6
Os03g0237500 Oryza sativa ssp. japonica HOM05D005902 ORTHO05D007182 3.1e-46 189.1 189 55.6
Zm00001eb010060 Zea mays HOM05D005902 ORTHO05D007182 3.4e-45 185.7 188 53.7
BcaC03g14730 Brassica carinata HOM05D005902 ORTHO05D007182 1.2e-37 160.6 94 86.2
MD03G1052600 Malus domestica HOM05D005902 ORTHO05D007182 3.5e-34 149.1 91 76.9
MCO11G231 Micromonas commoda HOM05D005902 ORTHO05D007182 3.2e-27 125.9 183 37.7
MD01G1041600 Malus domestica HOM05D005902 ORTHO05D007182 1.2e-26 124.0 79 73.4
Cre16.g691215 Chlamydomonas reinhardtii HOM05D005902 ORTHO05D007182 3.5e-26 122.5 182 35.2
MD16G1261800 Malus domestica HOM05D005902 ORTHO05D007182 1.5e-21 107.1 51 94.1
PRCOL_00005463 Prasinoderma coloniale HOM05D005902 ORTHO05D007182 2.9e-12 76.3 160 30.6
CSS0027287 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D000001 3.9e-09 65.9 31 93.5
BolC2t08309H Brassica oleracea HOM05D005902 ORTHO05D007182 1.8e-06 57.0 28 89.3


User provided reference genes

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