Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 0.0e+00 1283.1 718 100.0
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 0.0e+00 1247.3 718 97.9
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 0.0e+00 1211.4 719 95.4
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 0.0e+00 1124.4 720 88.8
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 0.0e+00 1079.7 721 80.6
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 1.3e-310 1069.3 721 79.9
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 4.9e-302 1040.8 722 78.4
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 1.1e-216 757.3 742 56.3
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 4.1e-216 755.4 752 55.2
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 5.3e-216 755.0 752 55.2
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 7.7e-215 751.1 743 56.0
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 1.0e-211 740.7 745 56.4
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 2.0e-210 736.5 721 56.4
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 1.1e-208 730.7 734 55.4
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 1.6e-207 726.9 741 54.9
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 3.6e-204 715.7 718 55.4
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 8.3e-201 704.5 728 53.7
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 3.5e-199 699.1 746 53.2
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 3.5e-199 699.1 742 53.2
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 4.5e-199 698.7 746 54.3
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 6.5e-198 694.9 729 53.2
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 5.5e-197 691.8 734 54.5
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 7.2e-197 691.4 737 53.7
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 9.5e-197 691.0 750 54.8
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 1.2e-196 690.6 723 52.7
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 6.1e-196 688.3 733 52.0
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 6.1e-196 688.3 730 53.3
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 1.8e-195 686.8 750 52.4
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 1.8e-195 686.8 737 55.0
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 4.0e-195 685.6 741 54.1
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 3.4e-194 682.6 739 54.3
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 1.3e-193 680.6 729 52.3
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 3.7e-193 679.1 730 51.9
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 3.7e-193 679.1 746 52.8
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 4.9e-193 678.7 743 52.9
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 8.3e-193 677.9 724 53.6
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 1.8e-192 676.8 750 50.8
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 4.1e-192 675.6 719 50.8
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 2.7e-191 672.9 742 52.6
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 5.9e-191 671.8 744 50.7
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 7.8e-191 671.4 747 51.0
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 5.0e-190 668.7 749 52.3
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 8.6e-190 667.9 724 52.6
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.1e-189 667.5 741 50.6
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 1.5e-189 667.2 737 51.3
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 3.3e-189 666.0 738 50.4
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 3.3e-189 666.0 730 50.5
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 1.2e-188 664.1 734 49.9
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 2.8e-188 662.9 726 51.8
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 1.0e-187 661.0 730 50.7
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 1.8e-187 660.2 693 52.7
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 5.2e-187 658.7 736 51.0
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 6.8e-187 658.3 735 51.7
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 2.6e-186 656.4 740 51.4
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 5.7e-186 655.2 730 50.4
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 7.5e-186 654.8 737 50.5
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 9.8e-186 654.4 728 50.3
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 1.7e-185 653.7 693 53.1
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.2e-185 653.3 728 50.4
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.4e-184 650.6 726 50.3
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 1.8e-184 650.2 734 54.1
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 3.2e-184 649.4 717 51.6
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 5.4e-184 648.7 732 49.7
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 7.0e-184 648.3 729 49.8
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 7.0e-184 648.3 734 49.3
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 2.0e-183 646.7 772 47.8
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 4.6e-183 645.6 748 50.7
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 5.9e-183 645.2 735 51.0
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 7.8e-183 644.8 748 54.7
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 7.3e-181 638.3 726 49.7
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 2.8e-180 636.3 739 49.9
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 1.4e-179 634.0 691 50.1
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 4.1e-176 622.5 737 48.4
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 4.6e-175 619.0 739 48.2
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 1.7e-174 617.1 739 48.2
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 5.6e-173 612.1 724 49.2
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 1.8e-171 607.1 739 47.8
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 8.9e-171 604.7 566 58.5
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 8.9e-171 604.7 738 51.4
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 1.7e-169 600.5 732 47.4
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 1.9e-168 597.0 721 49.7
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 2.1e-167 593.6 731 50.9
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 6.0e-167 592.0 738 50.0
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 1.3e-166 590.9 731 50.3
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 1.3e-166 590.9 768 45.8
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 1.7e-166 590.5 741 45.9
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 3.9e-166 589.3 739 49.4
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 1.1e-165 587.8 731 51.7
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 1.5e-165 587.4 732 50.8
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 1.5e-165 587.4 739 47.6
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 2.5e-165 586.6 736 48.9
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 2.5e-165 586.6 734 50.1
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 9.5e-165 584.7 740 48.5
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 3.6e-164 582.8 727 48.3
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 8.1e-164 581.6 727 50.2
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 4.0e-163 579.3 716 47.5
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 4.4e-162 575.9 656 50.0
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 5.8e-162 575.5 731 51.6
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 9.9e-162 574.7 728 51.5
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 9.2e-160 568.2 652 51.2
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 8.6e-158 561.6 742 46.8
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 7.3e-157 558.5 784 44.0
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 1.6e-156 557.4 742 46.8
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 2.8e-156 556.6 820 43.4
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 7.6e-154 548.5 658 49.7
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 1.4e-152 544.3 642 49.5
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 1.1e-149 534.6 647 49.5
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 1.1e-149 534.6 720 43.8
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 3.4e-146 523.1 641 46.3
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 3.2e-144 516.5 666 46.4
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 7.9e-135 485.3 783 44.6
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 2.6e-130 470.3 690 42.8
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 1.1e-128 464.9 556 48.6
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 1.9e-128 464.2 483 53.0
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 1.9e-128 464.2 670 42.2
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 5.5e-112 409.5 757 42.5
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 1.8e-110 404.4 817 36.8
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 1.5e-109 401.4 732 37.4
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 7.4e-109 399.1 769 41.0
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 3.7e-108 396.7 747 38.0
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 1.8e-83 314.7 544 37.9
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 7.7e-82 309.3 514 38.9
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 9.2e-75 285.8 465 38.5
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.2e-74 285.4 684 31.7
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 6.6e-57 226.5 688 28.1
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 1.1e-51 209.1 450 33.6
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 7.6e-45 186.4 224 46.0
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 1.2e-42 179.1 202 45.5
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 9.6e-40 169.5 132 64.4
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 5.2e-38 163.7 127 67.7
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 1.2e-34 152.5 98 75.5
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.7e-33 148.7 227 41.0
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 4.3e-32 144.1 322 32.0
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 2.4e-30 138.3 95 68.4
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 4.0e-30 137.5 111 62.2
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 5.3e-30 137.1 131 57.3
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 3.4e-29 134.4 97 60.8
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 5.3e-22 110.5 116 48.3
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 8.2e-15 86.7 74 55.4
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 6.9e-14 83.6 54 70.4
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 1.1e-11 76.3 193 37.3
Sopen05g027540 Solanum pennellii HOM05D005219 ORTHO05D394344 1.1e-11 76.3 88 59.1
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 2.1e-10 72.0 480 31.9
CAN.G696.6 Capsicum annuum HOM05D005219 ORTHO05D001154 2.3e-09 68.6 43 86.0
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 1.1e-08 66.2 111 38.7
DCAR_006144 Daucus carota HOM05D001312 ORTHO05D001832 7.4e-08 63.5 169 27.8
Solyc11g066780.3 Solanum lycopersicum HOM05D001312 ORTHO05D001832 2.8e-07 61.6 182 27.5
Zm00001eb092810 Zea mays HOM05D001312 ORTHO05D001832 4.8e-07 60.8 168 26.8
Peaxi162Scf00157g00417 Petunia axillaris HOM05D001312 ORTHO05D001832 6.3e-07 60.5 222 26.6
ATR0820G030 Amborella trichopoda HOM05D001312 ORTHO05D001832 1.1e-06 59.7 174 29.9
Pp3c7_5480 Physcomitrium patens HOM05D001312 ORTHO05D001832 1.1e-06 59.7 146 32.9
Sopen11g026500 Solanum pennellii HOM05D001312 ORTHO05D001832 1.8e-06 58.9 171 26.9
Zm00001eb406520 Zea mays HOM05D001312 ORTHO05D001832 1.8e-06 58.9 168 28.6
Dinv12534 Davidia involucrata HOM05D001312 ORTHO05D001832 2.4e-06 58.5 184 28.3
vmacro23022 Vaccinium macrocarpon HOM05D001312 ORTHO05D001832 3.1e-06 58.2 238 24.4
Aqoxy1G00966 Aquilegia oxysepala HOM05D001312 ORTHO05D001832 4.1e-06 57.8 169 27.8
vmacro03225 Vaccinium macrocarpon HOM05D001312 ORTHO05D001832 4.1e-06 57.8 238 24.4
vmacro23111 Vaccinium macrocarpon HOM05D001312 ORTHO05D001832 4.1e-06 57.8 238 24.4
VMungo1080G0366 Vigna mungo HOM05D001312 ORTHO05D001832 5.3e-06 57.4 184 27.7
Cc01_g09930 Coffea canephora HOM05D001312 ORTHO05D001832 6.9e-06 57.0 162 29.6


User provided reference genes

Program Settings