Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g034850 Solanum pennellii HOM05D003347 ORTHO05D003821 6.0e-56 221.9 267 100.0
PGSC0003DMG400023323 Solanum tuberosum HOM05D003347 ORTHO05D003821 7.6e-51 204.9 267 88.0
Solyc05g056460.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 6.5e-50 201.8 267 85.0
Nitab4.5_0000496g0140 Nicotiana tabacum HOM05D003347 ORTHO05D003821 7.4e-30 135.2 188 77.1
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 1.1e-20 104.8 275 68.0
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 7.0e-20 102.1 186 60.8
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 3.5e-19 99.8 189 63.5
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 8.5e-18 95.1 189 63.5
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 1.9e-17 94.0 199 70.9
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 1.9e-17 94.0 190 57.9
Oeu037839.1 Olea europaea HOM05D003347 ORTHO05D003821 3.2e-17 93.2 190 67.4
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 3.2e-17 93.2 187 57.2
CANSAT11G2200 Cannabis sativa HOM05D003347 ORTHO05D003821 2.1e-16 90.5 186 64.5
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 2.1e-16 90.5 192 62.0
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 2.7e-16 90.1 186 54.3
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 4.7e-16 89.4 188 63.3
Peaxi162Scf00006g00507 Petunia axillaris HOM05D003347 ORTHO05D003821 6.1e-16 89.0 91 89.0
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 8.0e-16 88.6 189 63.0
MSTRG.23472 Avicennia marina HOM05D003347 ORTHO05D003821 5.2e-15 85.9 191 60.2
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 5.2e-15 85.9 191 50.3
Nitab4.5_0013117g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 8.8e-15 85.1 155 73.5
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 8.8e-15 85.1 189 64.6
Duzib132G0710 Durio zibethinus HOM05D003347 ORTHO05D003821 2.6e-14 83.6 189 60.8
Dinv05136 Davidia involucrata HOM05D000040 ORTHO05D000267 3.4e-14 83.2 111 65.8
Gorai.008G042400 Gossypium raimondii HOM05D003347 ORTHO05D003821 5.7e-14 82.4 189 62.4
CAN.G1156.44 Capsicum annuum HOM05D003347 ORTHO05D003821 7.5e-14 82.0 197 74.1
CSS0043936 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 9.8e-14 81.6 113 54.0
Haze_01671 Corylus avellana HOM05D003347 ORTHO05D003821 9.8e-14 81.6 115 52.2
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.3e-13 81.3 190 62.6
AUR62014268 Chenopodium quinoa HOM05D003347 ORTHO05D003821 2.2e-13 80.5 185 54.1
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 2.8e-13 80.1 265 55.8
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 6.3e-13 79.0 189 57.7
GSVIVG01022926001 Vitis vinifera HOM05D003347 ORTHO05D003821 8.3e-13 78.6 190 60.5
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 3.1e-12 76.6 113 48.7
Gorai.012G161200 Gossypium raimondii HOM05D003347 ORTHO05D003821 5.4e-12 75.9 190 62.1
TWI14G1287 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 5.4e-12 75.9 190 53.2
CSS0030084 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 9.1e-12 75.1 187 55.1
Migut.H00863 Erythranthe guttata HOM05D003347 ORTHO05D003821 9.1e-12 75.1 191 57.1
Gohir.A12G031700 Gossypium hirsutum HOM05D003347 ORTHO05D003821 9.1e-12 75.1 189 58.7
MBI03_g33029_MAGBIO Magnolia biondii HOM05D003347 ORTHO05D003821 1.2e-11 74.7 189 57.7
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 2.7e-11 73.6 113 60.2
Manes.07G015700 Manihot esculenta HOM05D003347 ORTHO05D003821 2.7e-11 73.6 116 66.4
Rhsim10G0131200 Rhododendron simsii HOM05D003347 ORTHO05D003821 3.5e-11 73.2 186 64.0
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 5.9e-11 72.4 200 48.0
TWI79G0161 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 5.9e-11 72.4 186 55.9
Phvul.006G214600 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 7.7e-11 72.0 111 55.9
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 7.7e-11 72.0 186 51.1
Sc03g0004210 Simmondsia chinensis HOM05D003347 ORTHO05D003821 1.3e-10 71.2 176 54.5
Cfa002207 Carpinus fangiana HOM05D003347 ORTHO05D003821 2.2e-10 70.5 99 50.5
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 2.2e-10 70.5 113 53.1
CiPaw.03G114900 Carya illinoinensis HOM05D003347 ORTHO05D003821 6.5e-10 68.9 107 49.5
Potri.001G211000 Populus trichocarpa HOM05D003347 ORTHO05D003821 8.5e-10 68.6 174 60.9
Cfa005522 Carpinus fangiana HOM05D003347 ORTHO05D003821 1.5e-09 67.8 115 47.8
QL10p039663 Quercus lobata HOM05D003347 ORTHO05D003821 1.9e-09 67.4 73 56.2
COL.COLO4_12116 Corchorus olitorius HOM05D012218 ORTHO05D003821 2.5e-09 67.0 105 44.8
HanXRQChr03g0071751 Helianthus annuus HOM05D003347 ORTHO05D003821 3.2e-09 66.6 114 43.0
Sed0005094 Sechium edule HOM05D003347 ORTHO05D003821 3.2e-09 66.6 185 55.7
TWI59G0889 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 5.5e-09 65.9 95 51.6
ECA236G0662 Erigeron canadensis HOM05D003347 ORTHO05D003821 7.2e-09 65.5 194 57.7
RcHm_v2.0_Chr2g0123211 Rosa chinensis HOM05D003347 ORTHO05D003821 7.2e-09 65.5 73 68.5
AUR62042720 Chenopodium quinoa HOM05D003347 ORTHO05D003821 2.1e-08 63.9 111 43.2
Gohir.A09G006400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 3.6e-08 63.2 73 68.5
MD15G1137800 Malus domestica HOM05D003347 ORTHO05D003821 3.6e-08 63.2 192 56.2
FAN28G2623 Fragaria x ananassa HOM05D003347 ORTHO05D003821 4.7e-08 62.8 93 54.8
Glyma.15G046600 Glycine max HOM05D003347 ORTHO05D003821 6.1e-08 62.4 168 66.7
CDE06G2684 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 8.0e-08 62.0 189 49.2
Phvul.009G151400 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 8.0e-08 62.0 69 55.1
unitig_60.g25508 Utricularia gibba HOM05D003347 ORTHO05D003821 8.0e-08 62.0 73 61.6
HanXRQChr01g0017031 Helianthus annuus HOM05D003347 ORTHO05D003821 1.0e-07 61.6 92 58.7
Thecc.02G038200 Theobroma cacao HOM05D003347 ORTHO05D003821 1.0e-07 61.6 190 54.2
Hma1.2p1_0930F.1_g238020 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 1.4e-07 61.2 92 47.8
Duzib248G0125 Durio zibethinus HOM05D003347 ORTHO05D003821 1.8e-07 60.8 174 59.2
Glyma.06G158900 Glycine max HOM05D003347 ORTHO05D003821 2.3e-07 60.5 155 56.8
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 2.3e-07 60.5 198 55.1
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 4.0e-07 59.7 113 47.8
arahy.Tifrunner.gnm1.ann1.N22SFW Arachis hypogaea HOM05D003347 ORTHO05D003821 5.2e-07 59.3 187 54.0
Dinv19368 Davidia involucrata HOM05D003347 ORTHO05D003821 5.2e-07 59.3 113 54.9
Cpa.g.sc37.62 Carica papaya HOM05D003347 ORTHO05D003821 6.8e-07 58.9 71 47.9
VMungo0540G0141 Vigna mungo HOM05D003347 ORTHO05D003821 6.8e-07 58.9 187 53.5
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 8.8e-07 58.5 104 52.9
EL10Ac6g14071 Beta vulgaris HOM05D003347 ORTHO05D003821 1.2e-06 58.2 111 47.7
Lalb_Chr11g0068781 Lupinus albus HOM05D003347 ORTHO05D003821 1.2e-06 58.2 67 53.7
Hund12985 Selenicereus undatus HOM05D003347 ORTHO05D003821 1.2e-06 58.2 104 49.0
COL.COLO4_17865 Corchorus olitorius HOM05D003347 ORTHO05D003821 1.5e-06 57.8 113 61.9
Manes.12G147600 Manihot esculenta HOM05D003347 ORTHO05D003821 1.5e-06 57.8 101 56.4
Sed0017913 Sechium edule HOM05D003347 ORTHO05D003821 1.5e-06 57.8 69 49.3
Haze_25385 Corylus avellana HOM05D003347 ORTHO05D003821 2.0e-06 57.4 158 49.4
Lalb_Chr18g0060901 Lupinus albus HOM05D003347 ORTHO05D003821 2.0e-06 57.4 184 51.6
VMungo1309G3119 Vigna mungo HOM05D003347 ORTHO05D003821 2.0e-06 57.4 73 53.4
THA.LOC104819278 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 2.6e-06 57.0 183 54.1
vmacro12779 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 2.6e-06 57.0 106 62.3
AUR62006920 Chenopodium quinoa HOM05D003347 ORTHO05D003821 3.4e-06 56.6 72 65.3
Prupe.4G280500 Prunus persica HOM05D003347 ORTHO05D003821 3.4e-06 56.6 100 57.0
Lj1g0014274 Lotus japonicus HOM05D003347 ORTHO05D003821 4.4e-06 56.2 73 49.3
Nn1g08766 Nelumbo nucifera HOM05D003347 ORTHO05D003821 4.4e-06 56.2 191 55.5
TPR.G28695 Trifolium pratense HOM05D003347 ORTHO05D003821 4.4e-06 56.2 189 50.8
DCAR_029250 Daucus carota HOM05D003347 ORTHO05D003821 5.7e-06 55.8 115 52.2
Sc09g0002030 Simmondsia chinensis HOM05D003347 ORTHO05D003821 5.7e-06 55.8 73 63.0
FAN19G3034 Fragaria x ananassa HOM05D003347 ORTHO05D003821 9.8e-06 55.1 73 50.7
Glyma.08G186200 Glycine max HOM05D003347 ORTHO05D003821 9.8e-06 55.1 165 61.8


User provided reference genes

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