Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 9.9e-175 616.7 313 100.0
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 2.3e-171 605.5 313 98.1
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 9.9e-167 590.1 313 96.2
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 4.9e-158 561.2 311 92.6
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 9.6e-154 547.0 311 89.4
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.3e-153 546.6 313 89.8
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 2.0e-151 539.3 313 87.5
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 3.3e-138 495.4 295 84.4
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 5.7e-130 468.0 280 83.2
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 1.3e-129 466.8 310 77.1
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 9.1e-128 460.7 290 79.3
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 1.3e-126 456.8 311 74.9
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 1.3e-126 456.8 292 78.4
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 3.8e-126 455.3 287 79.1
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 6.5e-126 454.5 281 80.4
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 8.5e-126 454.1 337 70.6
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 8.5e-126 454.1 337 70.6
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 1.4e-125 453.4 284 80.3
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 4.2e-125 451.8 273 80.6
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 5.5e-125 451.4 282 81.2
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.2e-124 450.3 278 78.8
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 2.7e-124 449.1 321 72.9
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 3.6e-124 448.7 287 78.0
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 1.0e-123 447.2 280 78.9
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 1.0e-123 447.2 269 80.7
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 1.0e-123 447.2 269 80.7
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 1.8e-123 446.4 298 76.5
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 3.0e-123 445.7 283 78.1
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 3.0e-123 445.7 264 83.7
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 3.9e-123 445.3 271 79.7
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 3.9e-123 445.3 270 81.9
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 1.5e-122 443.4 271 80.1
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 2.0e-122 443.0 271 80.1
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 2.6e-122 442.6 270 81.1
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 7.4e-122 441.0 279 78.5
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 1.3e-121 440.3 287 77.0
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 1.7e-121 439.9 281 79.0
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 1.7e-121 439.9 290 76.9
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 2.8e-121 439.1 279 77.8
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 3.7e-121 438.7 292 75.7
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 1.4e-120 436.8 305 73.8
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 2.4e-120 436.0 302 73.8
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 3.1e-120 435.6 311 71.7
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 3.1e-120 435.6 271 78.6
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 7.0e-120 434.5 276 80.1
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 7.0e-120 434.5 274 79.2
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 7.0e-120 434.5 304 72.4
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 1.2e-119 433.7 320 70.9
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 1.2e-119 433.7 280 78.9
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 3.4e-119 432.2 263 82.1
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 3.4e-119 432.2 261 81.6
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 4.5e-119 431.8 290 74.8
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 7.7e-119 431.0 274 78.8
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 1.0e-118 430.6 276 77.9
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 1.0e-118 430.6 275 78.2
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 1.0e-118 430.6 299 75.3
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 1.3e-118 430.3 277 78.7
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 1.3e-118 430.3 267 77.2
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 1.7e-118 429.9 266 80.5
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.7e-118 429.9 278 76.6
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 2.2e-118 429.5 269 79.2
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 2.2e-118 429.5 269 80.7
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 2.9e-118 429.1 284 76.4
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 3.8e-118 428.7 269 79.6
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 5.0e-118 428.3 285 74.7
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 1.9e-117 426.4 301 72.1
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 1.9e-117 426.4 267 79.0
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 1.9e-117 426.4 267 79.8
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.9e-117 426.4 296 74.3
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 2.5e-117 426.0 269 79.6
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 2.5e-117 426.0 283 77.4
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 2.5e-117 426.0 267 76.8
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 3.2e-117 425.6 311 72.3
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 5.5e-117 424.9 283 76.3
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.2e-116 423.7 330 66.4
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 2.7e-116 422.5 267 79.4
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 2.7e-116 422.5 265 79.2
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 4.7e-116 421.8 267 79.4
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 4.7e-116 421.8 267 79.4
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 4.7e-116 421.8 268 79.1
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 1.0e-115 420.6 270 76.3
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.4e-115 420.2 304 70.1
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.4e-115 420.2 310 69.4
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 5.2e-115 418.3 269 78.4
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 6.7e-115 417.9 253 81.8
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 8.8e-115 417.5 304 69.7
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 2.6e-114 416.0 270 77.4
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 3.3e-114 415.6 263 76.8
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 4.4e-114 415.2 301 68.4
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 2.4e-112 409.5 285 71.6
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 7.7e-111 404.4 264 77.7
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 1.0e-110 404.1 261 78.2
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 1.4e-107 393.7 276 71.7
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 8.8e-107 391.0 264 73.9
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 5.7e-106 388.3 267 73.8
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 5.7e-106 388.3 233 81.5
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 7.5e-106 387.9 350 60.3
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 4.8e-105 385.2 249 77.9
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 1.4e-104 383.6 269 72.1
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 1.8e-104 383.3 250 77.6
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 2.7e-103 379.4 234 79.9
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 8.5e-102 374.4 273 70.7
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 7.2e-101 371.3 280 69.3
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 1.6e-100 370.2 262 69.1
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 2.7e-100 369.4 302 63.6
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 8.8e-99 364.4 284 66.2
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 5.7e-98 361.7 268 69.8
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 9.8e-98 360.9 224 79.0
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 1.4e-96 357.1 262 69.5
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 9.1e-96 354.4 256 69.9
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 1.2e-92 344.0 258 65.5
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 1.6e-92 343.6 251 71.3
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 5.2e-91 338.6 225 75.1
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 2.8e-89 332.8 256 66.4
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 2.4e-88 329.7 266 66.2
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 1.3e-86 323.9 282 58.9
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 3.8e-86 322.4 202 80.2
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 1.6e-84 317.0 260 60.8
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 1.4e-83 313.9 282 61.0
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 2.9e-81 306.2 174 86.8
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 4.9e-81 305.4 258 65.5
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.4e-80 303.9 242 66.5
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 1.9e-77 293.5 288 56.6
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 1.1e-75 287.7 171 82.5
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.9e-73 279.6 183 73.8
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 8.6e-70 268.1 183 70.5
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 1.7e-65 253.8 182 73.6
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 6.4e-65 251.9 154 79.9
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 8.6e-62 241.5 170 70.6
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 5.6e-61 238.8 183 68.9
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 6.8e-59 231.9 138 81.9
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 1.7e-57 227.3 260 46.5
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 4.0e-51 206.1 168 66.1
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 5.3e-51 205.7 150 70.7
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 1.3e-49 201.1 121 81.8
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 1.3e-49 201.1 121 81.8
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 5.4e-48 195.7 119 79.8
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 5.4e-48 195.7 119 79.8
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 2.3e-46 190.3 119 78.2
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 2.1e-39 167.2 302 37.4
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 1.3e-38 164.5 108 74.1
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 1.9e-37 160.6 139 59.7
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 1.6e-36 157.5 124 62.1
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 5.8e-34 149.1 125 54.4
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 1.7e-33 147.5 100 76.0
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 3.2e-32 143.3 173 46.8
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 2.7e-31 140.2 112 62.5
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 1.1e-29 134.8 194 41.2
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 1.1e-29 134.8 97 66.0
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 7.4e-29 132.1 85 75.3
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 2.4e-27 127.1 77 84.4
SEGI_22783 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 1.3e-22 111.3 91 65.9
Lalb_Chr06g0172371 Lupinus albus HOM05D004449 ORTHO05D005473 2.3e-22 110.5 70 78.6
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 5.7e-21 105.9 71 71.8
Rhsim07G0247200 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.8e-20 103.6 70 68.6
arahy.Tifrunner.gnm1.ann1.E2537D Arachis hypogaea HOM05D019151 ORTHO05D005473 2.5e-16 90.5 55 78.2
arahy.Tifrunner.gnm1.ann1.TG6NMP Arachis hypogaea HOM05D019151 ORTHO05D005473 2.5e-16 90.5 55 78.2
Sabra04G0060800 Salix brachista HOM05D004449 ORTHO05D005473 7.2e-16 89.0 197 36.5
Rhsim09G0019600 Rhododendron simsii HOM05D004449 ORTHO05D005473 3.6e-15 86.7 70 62.9
RcHm_v2.0_Chr4g0409701 Rosa chinensis HOM05D004449 ORTHO05D005473 5.7e-13 79.3 46 80.4
SEGI_21930 Sequoiadendron giganteum HOM05D004449 ORTHO05D386504 1.8e-06 57.8 63 50.8
SEGI_40272 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 3.9e-06 56.6 34 70.6
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 8.8e-06 55.5 243 23.5


User provided reference genes

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