Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g034470 Solanum pennellii HOM05D006914 ORTHO05D008583 1.2e-43 179.5 92 100.0
Nitab4.5_0009003g0040 Nicotiana tabacum HOM05D006914 ORTHO05D008583 3.3e-38 161.4 89 87.6
Peaxi162Scf00156g01316 Petunia axillaris HOM05D006914 ORTHO05D008583 1.7e-37 159.1 89 86.5
Nitab4.5_0001448g0020 Nicotiana tabacum HOM05D006914 ORTHO05D008583 1.2e-35 152.9 89 83.1
Gohir.D08G256600 Gossypium hirsutum HOM05D006914 ORTHO05D008583 4.5e-35 151.0 89 83.1
Gorai.004G273700 Gossypium raimondii HOM05D006914 ORTHO05D008583 4.5e-35 151.0 89 83.1
Nitab4.5_0000233g0040 Nicotiana tabacum HOM05D006914 ORTHO05D008583 1.7e-34 149.1 89 82.0
GSVIVG01008452001 Vitis vinifera HOM05D006914 ORTHO05D008583 1.7e-34 149.1 91 76.9
Nn8g40004 Nelumbo nucifera HOM05D006914 ORTHO05D008583 2.9e-34 148.3 89 77.5
Hund04582 Selenicereus undatus HOM05D000185 ORTHO05D000105 2.9e-34 148.3 89 79.8
PGR102G2895 Punica granatum HOM05D006914 ORTHO05D008583 3.8e-34 147.9 89 77.5
Cpa.g.sc46.184 Carica papaya HOM05D006914 ORTHO05D008583 5.0e-34 147.5 89 79.8
Thecc.09G152600 Theobroma cacao HOM05D006914 ORTHO05D008583 8.5e-34 146.7 89 79.8
Actinidia28379 Actinidia chinensis HOM05D006914 ORTHO05D008583 1.1e-33 146.4 89 78.7
RcHm_v2.0_Chr2g0085261 Rosa chinensis HOM05D006914 ORTHO05D008583 1.5e-33 146.0 89 78.7
Atru.chr7.325 Acer truncatum HOM05D006914 ORTHO05D008583 1.9e-33 145.6 89 78.7
MSTRG.10711 Avicennia marina HOM05D006914 ORTHO05D008583 2.5e-33 145.2 91 78.0
Ciclev10009995m.g Citrus clementina HOM05D006914 ORTHO05D008583 3.2e-33 144.8 89 78.7
COL.COLO4_23940 Corchorus olitorius HOM05D006914 ORTHO05D008583 4.2e-33 144.4 89 79.8
FAN23G1758 Fragaria x ananassa HOM05D006914 ORTHO05D008583 4.2e-33 144.4 89 76.4
FAN26G2758 Fragaria x ananassa HOM05D006914 ORTHO05D008583 4.2e-33 144.4 89 76.4
PGSC0003DMG400023462 Solanum tuberosum HOM05D006914 ORTHO05D008583 4.2e-33 144.4 74 98.6
Dinv41349 Davidia involucrata HOM05D006914 ORTHO05D008583 5.5e-33 144.1 89 76.4
Hma1.2p1_2085F.1_g313670 Hydrangea macrophylla HOM05D006914 ORTHO05D008583 5.5e-33 144.1 89 75.3
Duzib187G0910 Durio zibethinus HOM05D006914 ORTHO05D008583 7.2e-33 143.7 89 78.7
unitig_748.g7196 Utricularia gibba HOM05D006914 ORTHO05D008583 7.2e-33 143.7 89 80.9
DCAR_019414 Daucus carota HOM05D006346 ORTHO05D007910 9.4e-33 143.3 91 75.8
ECA240G0809 Erigeron canadensis HOM05D006914 ORTHO05D008583 9.4e-33 143.3 89 77.5
Potri.006G181400 Populus trichocarpa HOM05D006914 ORTHO05D008583 9.4e-33 143.3 89 78.7
AUR62015440 Chenopodium quinoa HOM05D006914 ORTHO05D008583 1.2e-32 142.9 89 76.4
Migut.K00305 Erythranthe guttata HOM05D006914 ORTHO05D008583 2.1e-32 142.1 89 78.7
QL02p093962 Quercus lobata HOM05D006914 ORTHO05D008583 2.1e-32 142.1 89 78.7
Actinidia23563 Actinidia chinensis HOM05D006914 ORTHO05D008583 2.7e-32 141.7 89 75.3
HanXRQChr03g0066101 Helianthus annuus HOM05D006914 ORTHO05D008583 3.6e-32 141.4 89 76.4
Lsat_1_v5_gn_7_49520 Lactuca sativa HOM05D006914 ORTHO05D008583 3.6e-32 141.4 89 76.4
Prupe.7G265800 Prunus persica HOM05D006914 ORTHO05D008583 3.6e-32 141.4 89 78.7
TWI34G0278 Tripterygium wilfordii HOM05D006914 ORTHO05D008583 3.6e-32 141.4 89 79.8
CSS0049762 Camellia sinensis var. sinensis HOM05D006914 ORTHO05D008583 4.7e-32 141.0 89 75.3
AUR62002229 Chenopodium quinoa HOM05D006914 ORTHO05D008583 4.7e-32 141.0 89 76.4
MELO3C004120.2 Cucumis melo HOM05D006914 ORTHO05D008583 4.7e-32 141.0 89 76.4
Oeu055276.1 Olea europaea HOM05D006914 ORTHO05D008583 4.7e-32 141.0 89 77.5
CsaV3_2G007660 Cucumis sativus L. HOM05D006914 ORTHO05D008583 6.1e-32 140.6 89 76.4
Duzib150G1072 Durio zibethinus HOM05D006914 ORTHO05D008583 6.1e-32 140.6 89 76.4
EL10Ac3g05865 Beta vulgaris HOM05D006914 ORTHO05D008583 8.0e-32 140.2 89 75.3
MD02G1005200 Malus domestica HOM05D006914 ORTHO05D008583 8.0e-32 140.2 89 76.4
Oeu021334.1 Olea europaea HOM05D006914 ORTHO05D008583 8.0e-32 140.2 89 76.4
CiPaw.15G165400 Carya illinoinensis HOM05D006914 ORTHO05D008583 1.0e-31 139.8 89 78.7
FvH4_1g00640 Fragaria vesca HOM05D006914 ORTHO05D008583 1.0e-31 139.8 89 75.3
MD15G1149500 Malus domestica HOM05D006914 ORTHO05D008583 1.0e-31 139.8 89 76.4
Cc06_g14590 Coffea canephora HOM05D006914 ORTHO05D008583 1.4e-31 139.4 91 75.8
Ah.13g066550 Amaranthus hybridus HOM05D006914 ORTHO05D008583 1.8e-31 139.0 89 74.2
Aqoxy5G02159 Aquilegia oxysepala HOM05D006914 ORTHO05D008583 1.8e-31 139.0 91 70.3
Glyma.04G155300 Glycine max HOM05D006914 ORTHO05D008583 1.8e-31 139.0 89 75.3
TAR383G0505 Trochodendron aralioides HOM05D006914 ORTHO05D008583 1.8e-31 139.0 89 75.3
AT5G57860 Arabidopsis thaliana HOM05D006914 ORTHO05D008583 3.0e-31 138.3 89 78.7
CANSAT56G0295 Cannabis sativa HOM05D006914 ORTHO05D008583 3.0e-31 138.3 89 76.4
ClCG02G014340 Citrullus lanatus HOM05D006914 ORTHO05D008583 3.0e-31 138.3 89 74.2
Manes.14G142700 Manihot esculenta HOM05D006914 ORTHO05D008583 3.0e-31 138.3 89 74.2
Cfa020795 Carpinus fangiana HOM05D006914 ORTHO05D008583 5.2e-31 137.5 89 73.0
Thhalv10015128m.g Eutrema salsugineum HOM05D006914 ORTHO05D008583 5.2e-31 137.5 89 78.7
TWI63G1652 Tripterygium wilfordii HOM05D006914 ORTHO05D008583 6.7e-31 137.1 89 75.3
Sed0012601 Sechium edule HOM05D006914 ORTHO05D008583 8.8e-31 136.7 89 75.3
TPR.G25932 Trifolium pratense HOM05D006914 ORTHO05D008583 8.8e-31 136.7 89 73.0
Sp6g19550 Schrenkiella parvula HOM05D006914 ORTHO05D008583 1.2e-30 136.3 89 77.5
Psat1g017920 Pisum sativum HOM05D006914 ORTHO05D008583 1.5e-30 136.0 89 75.3
AL8G33910 Arabidopsis lyrata HOM05D006914 ORTHO05D008583 2.0e-30 135.6 89 77.5
Carub.0008s1839 Capsella rubella HOM05D006914 ORTHO05D008583 2.0e-30 135.6 89 76.4
Lalb_Chr11g0072501 Lupinus albus HOM05D006914 ORTHO05D008583 2.6e-30 135.2 89 77.5
CARHR271600 Cardamine hirsuta HOM05D006914 ORTHO05D008583 3.3e-30 134.8 89 76.4
Glyma.06G225000 Glycine max HOM05D006914 ORTHO05D008583 7.5e-30 133.7 89 73.0
Zm00001eb329210 Zea mays HOM05D006914 ORTHO05D008583 9.7e-30 133.3 89 73.0
CAN.G694.81 Capsicum annuum HOM05D006914 ORTHO05D008583 1.7e-29 132.5 79 84.8
Ca_02367_v3 Cicer arietinum L. HOM05D006914 ORTHO05D008583 2.2e-29 132.1 89 70.8
PSO111G0010 Papaver somniferum HOM05D006914 ORTHO05D008583 2.2e-29 132.1 89 69.7
Phvul.007G242700 Phaseolus vulgaris HOM05D006914 ORTHO05D008583 2.8e-29 131.7 89 70.8
Sed0026010 Sechium edule HOM05D006914 ORTHO05D008583 2.8e-29 131.7 89 71.9
VMungo0720G1978 Vigna mungo HOM05D006914 ORTHO05D008583 2.8e-29 131.7 89 71.9
C02p13800 Brassica napus HOM05D006914 ORTHO05D008583 3.7e-29 131.3 89 74.2
BolC2t07499H Brassica oleracea HOM05D006914 ORTHO05D008583 3.7e-29 131.3 89 74.2
Lj6g0027463 Lotus japonicus HOM05D006914 ORTHO05D008583 3.7e-29 131.3 89 70.8
Os03g0364000 Oryza sativa ssp. japonica HOM05D006914 ORTHO05D008583 4.8e-29 131.0 90 73.3
BolC3t13912H Brassica oleracea HOM05D006914 ORTHO05D008583 8.2e-29 130.2 89 73.0
A02p08150 Brassica napus HOM05D006914 ORTHO05D008583 3.1e-28 128.3 89 74.2
A03p12500 Brassica napus HOM05D006914 ORTHO05D008583 4.1e-28 127.9 89 70.8
BraA03t10565Z Brassica rapa HOM05D006914 ORTHO05D008583 4.1e-28 127.9 89 70.8
Medtr2g046160 Medicago truncatula HOM05D006914 ORTHO05D008583 4.1e-28 127.9 89 67.4
ATR0763G197 Amborella trichopoda HOM05D006914 ORTHO05D008583 9.1e-28 126.7 89 65.2
C09p49750 Brassica napus HOM05D006914 ORTHO05D008583 1.2e-27 126.3 89 71.9
HPP92_020604 Vanilla planifolia HOM05D006914 ORTHO05D008583 2.0e-27 125.6 89 67.4
Aa31LG3G13700 Aethionema arabicum HOM05D006914 ORTHO05D008583 4.5e-27 124.4 89 68.5
Eucgr.C02509 Eucalyptus grandis HOM05D006914 ORTHO05D008583 2.9e-26 121.7 74 81.1
Rhsim03G0258700 Rhododendron simsii HOM05D000079 ORTHO05D000211 1.9e-25 119.0 74 78.4
CDE05G0490 Ceratophyllum demersum HOM05D006914 ORTHO05D008583 7.2e-25 117.1 91 62.6
TAR626G0439 Trochodendron aralioides HOM05D006914 ORTHO05D008583 7.2e-25 117.1 74 75.7
vmacro06059 Vaccinium macrocarpon HOM05D000079 ORTHO05D000211 1.2e-24 116.3 74 74.3
BcaB05g22379 Brassica carinata HOM05D006914 ORTHO05D008583 3.6e-24 114.8 89 69.7
SGA_v2.0_scaffold222G42803 Striga asiatica HOM05D006914 ORTHO05D008583 3.6e-24 114.8 74 75.7
BraA02t05889Z Brassica rapa HOM05D006914 ORTHO05D008583 3.0e-23 111.7 79 72.2
Haze_19153 Corylus avellana HOM05D006914 ORTHO05D008583 4.0e-23 111.3 74 71.6
arahy.Tifrunner.gnm1.ann1.S2MTQV Arachis hypogaea HOM05D006914 ORTHO05D008583 2.0e-22 109.0 74 70.3
Pp3c19_17380 Physcomitrium patens HOM05D006914 ORTHO05D008583 5.7e-22 107.5 90 61.1
arahy.Tifrunner.gnm1.ann1.6E7PQ4 Arachis hypogaea HOM05D006914 ORTHO05D008583 9.8e-22 106.7 74 68.9
PSO782G4630 Papaver somniferum HOM05D006914 ORTHO05D008583 8.3e-21 103.6 89 56.2
Gohir.A08G236100 Gossypium hirsutum HOM05D006914 ORTHO05D008583 1.2e-19 99.8 62 75.8
AagrBONN_evm.TU.Sc2ySwM_362.2477 Anthoceros agrestis HOM05D006914 ORTHO05D008583 2.0e-19 99.0 93 60.2
CBR_g51779 Chara braunii HOM05D006914 ORTHO05D008583 1.7e-18 95.9 90 56.7
Mapoly0004s0198 Marchantia polymorpha HOM05D006914 ORTHO05D008583 1.7e-18 95.9 83 56.6
SMO304G0019 Selaginella moellendorffii HOM05D006914 ORTHO05D008583 1.9e-17 92.4 73 61.6
Cre12.g554750 Chlamydomonas reinhardtii HOM05D006914 ORTHO05D008583 6.1e-16 87.4 84 54.8
Sc13g0007320 Simmondsia chinensis HOM05D006914 ORTHO05D008583 2.3e-15 85.5 62 66.1
Pp3c17_5060 Physcomitrium patens HOM05D006914 ORTHO05D008583 3.0e-15 85.1 97 51.5
SHI02838 Sapria himalayana HOM05D006914 ORTHO05D008583 3.4e-14 81.6 87 48.3
AagrBONN_evm.TU.Sc2ySwM_228.3148 Anthoceros agrestis HOM05D006914 ORTHO05D008583 2.2e-13 79.0 86 47.7
Haze_19154 Corylus avellana HOM05D002983 ORTHO05D003451 1.8e-12 75.9 62 62.9
Aa31LG1G14450 Aethionema arabicum HOM05D006914 ORTHO05D008583 5.4e-12 74.3 73 53.4
BcaC04g19922 Brassica carinata HOM05D006914 ORTHO05D008583 2.7e-11 72.0 51 70.6
PRCOL_00002080 Prasinoderma coloniale HOM05D006914 ORTHO05D008583 1.0e-10 70.1 83 50.6
MCO12G243 Micromonas commoda HOM05D006914 ORTHO05D008583 1.8e-07 59.3 108 37.0
C08p16940 Brassica napus HOM05D006914 ORTHO05D008583 8.9e-07 57.0 37 70.3


User provided reference genes

Program Settings