Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 1.9e-110 402.5 203 100.0
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 3.2e-102 375.2 201 94.0
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 7.2e-102 374.0 201 94.0
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 2.0e-99 365.9 203 91.1
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 2.0e-99 365.9 203 91.1
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 8.9e-76 287.3 208 71.2
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 2.9e-74 282.3 204 70.6
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 2.1e-72 276.2 210 70.0
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.8e-60 236.5 202 61.4
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.1e-60 235.7 202 61.4
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 4.0e-60 235.3 192 62.0
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.1e-57 227.3 202 59.4
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 3.2e-57 225.7 158 72.8
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 4.2e-57 225.3 202 59.9
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 4.2e-57 225.3 182 66.5
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 1.6e-56 223.4 200 59.5
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.5e-56 222.2 171 66.7
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 1.0e-55 220.7 202 58.9
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.7e-55 219.9 132 83.3
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.3e-54 215.7 197 55.8
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 4.3e-54 215.3 197 56.3
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 4.3e-54 215.3 178 61.2
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.3e-53 213.8 178 59.6
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.6e-53 213.4 178 59.6
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 3.6e-53 212.2 179 58.7
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 6.2e-53 211.5 177 59.3
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 6.2e-53 211.5 193 57.0
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 3.1e-52 209.1 199 56.3
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 4.0e-52 208.8 200 54.5
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 5.3e-52 208.4 172 60.5
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 9.0e-52 207.6 171 61.4
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 2.0e-51 206.5 178 59.0
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 5.8e-51 204.9 177 59.9
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 5.8e-51 204.9 198 54.0
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 5.8e-51 204.9 200 54.0
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 1.7e-50 203.4 215 51.2
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 6.4e-50 201.4 197 51.3
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 6.4e-50 201.4 198 54.5
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 1.9e-49 199.9 171 59.6
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 2.4e-49 199.5 198 54.0
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 5.4e-49 198.4 194 55.2
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 7.1e-49 198.0 193 53.4
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 9.3e-49 197.6 203 58.1
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 1.2e-48 197.2 178 56.7
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 1.6e-48 196.8 171 58.5
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 2.1e-48 196.4 162 63.0
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.7e-48 196.1 194 54.6
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 4.6e-48 195.3 168 56.0
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 4.6e-48 195.3 194 54.1
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 7.9e-48 194.5 195 51.3
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 1.0e-47 194.1 194 54.1
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.0e-47 194.1 194 54.1
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.0e-47 194.1 194 54.1
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 1.7e-47 193.4 196 53.1
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 3.0e-47 192.6 178 56.7
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 3.9e-47 192.2 171 57.9
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.9e-47 192.2 194 54.1
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 3.9e-47 192.2 202 50.0
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 5.1e-47 191.8 138 70.3
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 6.6e-47 191.4 178 53.9
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 8.7e-47 191.0 179 55.9
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 2.5e-46 189.5 200 52.0
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 2.5e-46 189.5 197 50.8
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 3.3e-46 189.1 203 51.2
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 3.3e-46 189.1 190 53.2
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 3.3e-46 189.1 202 49.5
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 4.3e-46 188.7 178 54.5
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 5.6e-46 188.3 205 50.2
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 9.6e-46 187.6 177 53.1
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 9.6e-46 187.6 203 51.2
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 9.6e-46 187.6 193 51.3
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 3.6e-45 185.7 182 54.9
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.6e-45 185.7 134 69.4
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 3.6e-45 185.7 171 56.1
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 4.8e-45 185.3 170 55.3
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 8.1e-45 184.5 181 52.5
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 1.8e-44 183.3 191 51.3
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 5.3e-44 181.8 182 53.8
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 5.3e-44 181.8 182 53.8
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 6.9e-44 181.4 194 50.5
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 1.5e-43 180.3 171 57.3
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 2.6e-43 179.5 178 49.4
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 9.9e-43 177.6 196 50.0
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 2.9e-42 176.0 168 52.4
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 1.1e-41 174.1 171 55.6
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 3.2e-41 172.6 198 46.5
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 2.1e-40 169.9 199 44.2
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 3.5e-40 169.1 199 44.2
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 1.3e-39 167.2 169 51.5
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.8e-39 166.8 159 54.1
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 1.8e-39 166.8 175 50.9
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 1.8e-39 166.8 171 52.6
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 2.3e-39 166.4 195 46.2
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 5.1e-39 165.2 171 50.9
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 6.7e-39 164.9 178 48.9
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 1.1e-38 164.1 152 55.3
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 1.9e-38 163.3 188 46.8
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 2.5e-38 162.9 210 43.3
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 4.3e-38 162.2 171 50.9
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 7.4e-38 161.4 173 51.4
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 1.3e-37 160.6 173 51.4
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 1.3e-37 160.6 175 49.1
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 1.3e-37 160.6 162 51.9
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 1.6e-37 160.2 187 46.5
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 1.6e-37 160.2 177 47.5
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 2.1e-37 159.8 184 49.5
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 2.1e-37 159.8 171 51.5
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 2.8e-37 159.5 171 49.7
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 4.8e-37 158.7 180 45.0
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 8.1e-37 157.9 198 44.4
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 1.1e-36 157.5 171 50.3
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 1.1e-36 157.5 171 50.3
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 2.4e-36 156.4 158 52.5
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 2.4e-36 156.4 188 47.3
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 3.1e-36 156.0 177 48.0
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 1.5e-35 153.7 170 44.7
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 2.0e-35 153.3 178 45.5
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 1.0e-34 151.0 202 43.6
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 1.7e-34 150.2 181 43.1
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 4.9e-34 148.7 186 44.1
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 4.9e-34 148.7 158 51.9
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 6.5e-34 148.3 176 48.9
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 8.4e-34 147.9 168 47.6
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 1.1e-33 147.5 171 45.6
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 1.4e-33 147.1 186 43.5
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 1.2e-32 144.1 183 45.9
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 2.1e-32 143.3 185 43.2
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 2.7e-32 142.9 182 46.2
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 3.5e-32 142.5 186 46.2
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 6.0e-32 141.7 170 46.5
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 1.8e-31 140.2 157 49.0
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 1.9e-30 136.7 150 48.0
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 3.3e-30 136.0 120 54.2
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 4.3e-30 135.6 159 47.2
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 9.6e-30 134.4 200 40.0
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.3e-29 134.0 180 43.3
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.3e-29 134.0 180 43.3
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 1.3e-29 134.0 204 41.7
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 1.6e-29 133.7 178 43.3
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 8.2e-29 131.3 122 54.1
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.1e-28 131.0 106 60.4
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 2.4e-28 129.8 197 38.1
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 2.0e-27 126.7 182 40.7
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 2.6e-27 126.3 177 42.4
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 4.5e-27 125.6 160 41.2
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.0e-26 124.4 116 50.9
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.9e-25 120.2 73 83.6
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 5.5e-25 118.6 117 50.4
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 1.8e-20 103.6 112 46.4
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 5.3e-20 102.1 132 43.9
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 1.1e-12 77.8 197 28.9
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 4.5e-11 72.4 106 38.7
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 5.9e-11 72.0 84 42.9
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 2.9e-10 69.7 175 28.0
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 2.1e-08 63.5 95 38.9
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 5.1e-07 58.9 80 37.5


User provided reference genes

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