Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g034000 Solanum pennellii HOM05D007188 ORTHO05D009102 4.5e-115 417.9 211 100.0
Solyc05g055550.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 3.3e-113 411.8 211 98.6
Solyc02g033060.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 4.7e-112 407.9 211 98.1
PGSC0003DMG400023370 Solanum tuberosum HOM05D007188 ORTHO05D009102 1.6e-107 392.9 211 94.3
CAN.G694.38 Capsicum annuum HOM05D007188 ORTHO05D009102 1.7e-98 362.8 208 87.0
Nitab4.5_0001760g0020 Nicotiana tabacum HOM05D007188 ORTHO05D009102 4.7e-88 328.2 209 81.8
Peaxi162Scf00176g01519 Petunia axillaris HOM05D007188 ORTHO05D009102 1.4e-79 300.1 213 75.1
Nitab4.5_0000096g0330 Nicotiana tabacum HOM05D007188 ORTHO05D009102 6.0e-67 258.1 179 76.5
Sopen02g011440 Solanum pennellii HOM05D007188 ORTHO05D009102 1.0e-66 257.3 140 94.3
Actinidia38870 Actinidia chinensis HOM05D007188 ORTHO05D009102 3.0e-66 255.8 210 66.2
QL08p054189 Quercus lobata HOM05D007188 ORTHO05D009102 8.7e-66 254.2 181 70.7
GSVIVG01016213001 Vitis vinifera HOM05D007188 ORTHO05D009102 3.3e-65 252.3 172 73.3
TWI38G2147 Tripterygium wilfordii HOM05D007188 ORTHO05D009102 1.6e-64 250.0 207 64.7
Migut.F01952 Erythranthe guttata HOM05D007188 ORTHO05D009102 4.8e-64 248.4 193 64.2
SGA_v2.0_scaffold62G21381 Striga asiatica HOM05D007188 ORTHO05D009102 1.4e-63 246.9 166 71.7
Potri.008G034900 Populus trichocarpa HOM05D007188 ORTHO05D009102 1.8e-63 246.5 183 71.0
SalBow4G2327 Salvia bowleyana HOM05D007188 ORTHO05D009102 2.4e-63 246.1 159 73.6
CiPaw.02G171800 Carya illinoinensis HOM05D007188 ORTHO05D009102 5.3e-63 245.0 181 68.0
Cc02_g10880 Coffea canephora HOM05D007188 ORTHO05D009102 5.3e-63 245.0 173 70.5
Sabra08G0023300 Salix brachista HOM05D007188 ORTHO05D009102 6.9e-63 244.6 212 63.7
TAR623G0008 Trochodendron aralioides HOM05D007188 ORTHO05D009102 6.9e-63 244.6 214 61.2
RhsimUnG0185400 Rhododendron simsii HOM05D007188 ORTHO05D009102 9.0e-63 244.2 149 81.2
CSS0007320 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 2.0e-62 243.0 203 65.0
CSS0035829 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 2.6e-62 242.7 203 64.5
Aqoxy1G01136 Aquilegia oxysepala HOM05D007188 ORTHO05D009102 7.6e-62 241.1 168 69.6
Rhsim09G0148000 Rhododendron simsii HOM05D007188 ORTHO05D009102 7.6e-62 241.1 149 80.5
Cfa001805 Carpinus fangiana HOM05D007188 ORTHO05D009102 1.3e-61 240.4 172 71.5
MD01G1102700 Malus domestica HOM05D007188 ORTHO05D009102 1.7e-61 240.0 209 60.3
Nn6g35269 Nelumbo nucifera HOM05D007188 ORTHO05D009102 2.2e-61 239.6 207 60.9
Duzib106G0123 Durio zibethinus HOM05D007188 ORTHO05D009102 3.8e-61 238.8 182 66.5
Eucgr.G02872 Eucalyptus grandis HOM05D007188 ORTHO05D009102 3.8e-61 238.8 158 72.2
arahy.Tifrunner.gnm1.ann1.3RW2WH Arachis hypogaea HOM05D007188 ORTHO05D009102 6.4e-61 238.0 153 75.8
arahy.Tifrunner.gnm1.ann1.CRM3NE Arachis hypogaea HOM05D007188 ORTHO05D009102 6.4e-61 238.0 153 75.8
Gohir.A05G293300 Gossypium hirsutum HOM05D007188 ORTHO05D009102 3.2e-60 235.7 149 74.5
Gohir.D05G294000 Gossypium hirsutum HOM05D007188 ORTHO05D009102 4.2e-60 235.3 149 74.5
Gorai.009G310600 Gossypium raimondii HOM05D007188 ORTHO05D009102 5.4e-60 235.0 149 73.8
Lsat_1_v5_gn_8_20860 Lactuca sativa HOM05D007188 ORTHO05D009102 5.4e-60 235.0 180 65.6
Sc06g0002050 Simmondsia chinensis HOM05D007188 ORTHO05D009102 1.2e-59 233.8 143 77.6
HanXRQChr08g0218401 Helianthus annuus HOM05D007188 ORTHO05D009102 1.6e-59 233.4 179 66.5
CANSAT56G0643 Cannabis sativa HOM05D007188 ORTHO05D009102 7.9e-59 231.1 182 64.8
Manes.07G133140 Manihot esculenta HOM05D007188 ORTHO05D009102 7.9e-59 231.1 212 58.0
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 1.0e-58 230.7 146 76.0
AUR62014280 Chenopodium quinoa HOM05D007188 ORTHO05D009102 1.8e-58 229.9 155 72.9
Sed0000210 Sechium edule HOM05D007188 ORTHO05D009102 3.9e-58 228.8 166 69.3
unitig_88.g27814 Utricularia gibba HOM05D007188 ORTHO05D009102 3.9e-58 228.8 193 60.6
Glyma.20G183500 Glycine max HOM05D007188 ORTHO05D009102 8.7e-58 227.6 170 65.9
RcHm_v2.0_Chr1g0362491 Rosa chinensis HOM05D007188 ORTHO05D009102 8.7e-58 227.6 168 68.5
C03p44120 Brassica napus HOM05D007188 ORTHO05D009102 1.5e-57 226.9 195 61.0
AL3G21760 Arabidopsis lyrata HOM05D007188 ORTHO05D009102 1.9e-57 226.5 179 62.6
ECA233G0714 Erigeron canadensis HOM05D007188 ORTHO05D009102 2.5e-57 226.1 212 57.5
VMungo0720G2339 Vigna mungo HOM05D007188 ORTHO05D009102 2.5e-57 226.1 182 63.7
Phvul.007G099300 Phaseolus vulgaris HOM05D007188 ORTHO05D009102 4.3e-57 225.3 148 71.6
A03p36520 Brassica napus HOM05D007188 ORTHO05D009102 5.6e-57 224.9 207 57.0
Lalb_Chr21g0313651 Lupinus albus HOM05D007188 ORTHO05D009102 5.6e-57 224.9 157 68.8
BolC3t16687H Brassica oleracea HOM05D007188 ORTHO05D009102 9.6e-57 224.2 193 61.1
BraA03t12819Z Brassica rapa HOM05D007188 ORTHO05D009102 9.6e-57 224.2 167 65.3
CsaV3_5G036040 Cucumis sativus L. HOM05D007188 ORTHO05D009102 1.3e-56 223.8 180 62.8
Atru.chr12.855 Acer truncatum HOM05D007188 ORTHO05D009102 1.6e-56 223.4 211 57.8
MELO3C012404.2 Cucumis melo HOM05D007188 ORTHO05D009102 8.1e-56 221.1 171 65.5
CDE09G0470 Ceratophyllum demersum HOM05D007188 ORTHO05D009102 1.8e-55 219.9 181 60.2
Aa31LG3G3010 Aethionema arabicum HOM05D007188 ORTHO05D009102 2.4e-55 219.5 212 54.7
AT3G10405 Arabidopsis thaliana HOM05D007188 ORTHO05D009102 5.3e-55 218.4 178 60.1
Sp3g08680 Schrenkiella parvula HOM05D007188 ORTHO05D009102 6.9e-55 218.0 210 55.2
Thhalv10021497m.g Eutrema salsugineum HOM05D007188 ORTHO05D009102 4.5e-54 215.3 208 53.8
TPR.G10293 Trifolium pratense HOM05D007188 ORTHO05D009102 5.8e-54 214.9 148 68.2
CARHR084890 Cardamine hirsuta HOM05D007188 ORTHO05D009102 7.6e-54 214.5 149 67.1
FAN01G3175 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.0e-53 214.2 164 65.2
Medtr1g094160 Medicago truncatula HOM05D007188 ORTHO05D009102 1.0e-53 214.2 193 57.5
FAN03G0393 Fragaria x ananassa HOM05D007188 ORTHO05D009102 2.9e-53 212.6 169 63.9
Lj5g0026151 Lotus japonicus HOM05D007188 ORTHO05D009102 2.9e-53 212.6 216 56.9
ClCG05G021230 Citrullus lanatus HOM05D007188 ORTHO05D009102 4.9e-53 211.8 176 62.5
Ca_10538_v3 Cicer arietinum L. HOM05D007188 ORTHO05D009102 8.4e-53 211.1 185 60.5
Psat6g181120 Pisum sativum HOM05D007188 ORTHO05D009102 1.1e-52 210.7 184 58.2
Carub.0003s0959 Capsella rubella HOM05D007188 ORTHO05D009102 1.4e-52 210.3 186 56.5
FAN06G0953 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.4e-52 210.3 169 62.7
FAN06G2123 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.4e-52 210.3 169 62.7
FAN10G2630 Fragaria x ananassa HOM05D007188 ORTHO05D009102 3.2e-52 209.1 169 62.1
PSO063G4012 Papaver somniferum HOM05D007188 ORTHO05D009102 9.3e-52 207.6 179 58.7
Dinv31237 Davidia involucrata HOM05D007188 ORTHO05D009102 4.6e-51 205.3 170 64.7
THA.LOC104826897 Tarenaya hassleriana HOM05D007188 ORTHO05D009102 3.0e-50 202.6 227 52.0
Zm00001eb022660 Zea mays HOM05D007188 ORTHO05D009102 5.1e-50 201.8 159 62.9
Glyma.10G207400 Glycine max HOM05D007188 ORTHO05D009102 7.4e-49 198.0 148 65.5
Os10g0545100 Oryza sativa ssp. japonica HOM05D007188 ORTHO05D009102 9.6e-49 197.6 153 61.4
Thecc.10G085100 Theobroma cacao HOM05D007188 ORTHO05D009102 4.1e-47 192.2 146 67.1
Haze_16743 Corylus avellana HOM05D007188 ORTHO05D009102 6.9e-47 191.4 172 60.5
BcaC01g04184 Brassica carinata HOM05D007188 ORTHO05D009102 9.0e-47 191.0 195 54.4
EL10Ac4g08743 Beta vulgaris HOM05D007188 ORTHO05D009102 2.6e-46 189.5 152 63.2
COL.COLO4_36178 Corchorus olitorius HOM05D007188 ORTHO05D009102 2.5e-44 183.0 191 51.8
Prupe.2G208300 Prunus persica HOM05D007188 ORTHO05D009102 7.1e-44 181.4 133 67.7
Mapoly0050s0048 Marchantia polymorpha HOM05D007188 ORTHO05D009102 6.7e-42 174.9 151 54.3
Mapoly0278s0008 Marchantia polymorpha HOM05D007188 ORTHO05D009102 6.7e-42 174.9 151 54.3
vmacro04839 Vaccinium macrocarpon HOM05D007188 ORTHO05D009102 8.7e-42 174.5 142 63.4
Hund14950 Selenicereus undatus HOM05D007188 ORTHO05D009102 6.3e-40 168.3 111 70.3
Pp3c2_18450 Physcomitrium patens HOM05D007188 ORTHO05D009102 7.7e-38 161.4 204 43.1
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 7.9e-35 151.4 150 50.7
Ciclev10033195m.g Citrus clementina HOM05D007188 ORTHO05D009102 1.7e-32 143.7 90 75.6
SMO358G0267 Selaginella moellendorffii HOM05D007188 ORTHO05D009102 2.9e-29 132.9 146 43.8
FvH4_7g18710 Fragaria vesca HOM05D007188 ORTHO05D009102 6.3e-24 115.2 109 55.0
CBR_g28804 Chara braunii HOM05D007188 ORTHO05D009102 3.1e-23 112.8 181 35.4
PSO339G6470 Papaver somniferum HOM05D007188 ORTHO05D009102 1.7e-21 107.1 113 48.7
SEGI_08985 Sequoiadendron giganteum HOM05D007188 ORTHO05D009102 9.4e-20 101.3 97 55.7
Rhsim09G0147800 Rhododendron simsii HOM05D007188 ORTHO05D009102 5.7e-17 92.0 186 36.0
RhsimUnG0185100 Rhododendron simsii HOM05D007188 ORTHO05D009102 7.5e-17 91.7 186 34.4
MCO11G330 Micromonas commoda HOM05D007188 ORTHO05D009102 9.7e-17 91.3 169 27.2
PRCOL_00002171 Prasinoderma coloniale HOM05D007188 ORTHO05D009102 2.2e-13 80.1 143 35.7
FAN10G3168 Fragaria x ananassa HOM05D007188 ORTHO05D009102 9.4e-12 74.7 77 51.9
Oeu034116.1 Olea europaea HOM05D007188 ORTHO05D009102 2.3e-10 70.1 51 68.6
Cre10.g464650 Chlamydomonas reinhardtii HOM05D007188 ORTHO05D009102 6.8e-10 68.6 122 26.2
AUR62034156 Chenopodium quinoa HOM05D007188 ORTHO05D009102 2.2e-08 63.5 47 61.7
HPP92_025582 Vanilla planifolia HOM05D006951 ORTHO05D008594 2.0e-06 57.0 45 48.9
vmacro04837 Vaccinium macrocarpon HOM05D000026 ORTHO05D000094 2.7e-06 56.6 39 69.2
HPP92_025583 Vanilla planifolia HOM05D006951 ORTHO05D008594 5.9e-06 55.5 44 59.1


User provided reference genes

Program Settings