Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g033870 Solanum pennellii HOM05D005304 ORTHO05D004438 2.2e-51 205.3 102 100.0
PGSC0003DMG400023483 Solanum tuberosum HOM05D005304 ORTHO05D004438 2.9e-43 178.3 106 86.8
Oeu059829.1 Olea europaea HOM05D005304 ORTHO05D004438 1.2e-15 86.7 112 49.1
Oeu032435.1 Olea europaea HOM05D005304 ORTHO05D004438 2.6e-15 85.5 105 52.4
Nitab4.5_0000593g0370 Nicotiana tabacum HOM05D005304 ORTHO05D004438 3.4e-15 85.1 118 41.5
Nitab4.5_0000107g0230 Nicotiana tabacum HOM05D005304 ORTHO05D004438 1.3e-14 83.2 101 51.5
CAN.G612.11 Capsicum annuum HOM05D005304 ORTHO05D004438 2.9e-14 82.0 113 47.8
Cc02_g10500 Coffea canephora HOM05D005304 ORTHO05D004438 3.7e-14 81.6 125 47.2
Solyc03g071710.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 6.0e-12 74.3 109 44.0
Sopen03g019970 Solanum pennellii HOM05D005304 ORTHO05D004438 6.0e-12 74.3 109 44.0
Sopen11g003720 Solanum pennellii HOM05D005304 ORTHO05D004438 1.7e-11 72.8 103 45.6
PGSC0003DMG400016914 Solanum tuberosum HOM05D005304 ORTHO05D004438 6.6e-11 70.9 113 41.6
Solyc11g007860.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 1.1e-10 70.1 110 42.7
COL.COLO4_32872 Corchorus olitorius HOM05D005304 ORTHO05D004438 1.5e-10 69.7 122 34.4
PGSC0003DMG400027330 Solanum tuberosum HOM05D005304 ORTHO05D004438 1.9e-10 69.3 92 46.7
Gohir.A05G290700 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.5e-10 68.9 111 38.7
Lalb_Chr02g0151151 Lupinus albus HOM05D005304 ORTHO05D004438 4.3e-10 68.2 82 46.3
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 4.3e-10 68.2 104 43.3
Migut.F01894 Erythranthe guttata HOM05D005304 ORTHO05D004438 9.5e-10 67.0 111 40.5
Gohir.D05G291900 Gossypium hirsutum HOM05D005304 ORTHO05D004438 9.5e-10 67.0 109 39.4
Gorai.009G307700 Gossypium raimondii HOM05D005304 ORTHO05D004438 9.5e-10 67.0 112 36.6
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.2e-09 66.6 104 38.5
CAN.G135.30 Capsicum annuum HOM05D021137 ORTHO05D004438 1.6e-09 66.2 106 43.4
Lalb_Chr06g0170051 Lupinus albus HOM05D005304 ORTHO05D004438 1.6e-09 66.2 102 40.2
Sopen11g003740 Solanum pennellii HOM05D021137 ORTHO05D004438 1.6e-09 66.2 74 51.4
Solyc11g007880.1 Solanum lycopersicum HOM05D021137 ORTHO05D004438 2.1e-09 65.9 74 51.4
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 2.8e-09 65.5 85 43.5
SalBow4G2705 Salvia bowleyana HOM05D005304 ORTHO05D004438 4.7e-09 64.7 95 42.1
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.1e-08 63.5 104 38.5
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 1.1e-08 63.5 104 38.5
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 1.1e-08 63.5 114 39.5
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.1e-08 63.5 89 44.9
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 1.1e-08 63.5 71 45.1
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 1.8e-08 62.8 75 45.3
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 1.8e-08 62.8 114 37.7
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 2.3e-08 62.4 113 36.3
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 2.3e-08 62.4 72 48.6
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 2.3e-08 62.4 72 48.6
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 2.3e-08 62.4 116 39.7
Aqoxy2G01602 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 4.0e-08 61.6 96 41.7
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 4.0e-08 61.6 105 38.1
VMungo0720G0262 Vigna mungo HOM05D005304 ORTHO05D004438 5.2e-08 61.2 78 44.9
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 8.9e-08 60.5 98 41.8
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 8.9e-08 60.5 100 38.0
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 8.9e-08 60.5 67 43.3
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 1.2e-07 60.1 81 43.2
Gohir.D05G087300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.2e-07 60.1 85 41.2
Phvul.007G141600 Phaseolus vulgaris HOM05D005304 ORTHO05D004438 1.5e-07 59.7 77 44.2
Psat6g173960 Pisum sativum HOM05D005304 ORTHO05D004438 1.5e-07 59.7 76 46.1
Potri.010G231700 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.5e-07 59.7 94 47.9
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 2.0e-07 59.3 75 41.3
Migut.F01597 Erythranthe guttata HOM05D005304 ORTHO05D004438 2.0e-07 59.3 117 36.8
Gorai.009G089100 Gossypium raimondii HOM05D005304 ORTHO05D004438 2.0e-07 59.3 84 41.7
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 2.0e-07 59.3 76 42.1
Ca_10460_v3 Cicer arietinum L. HOM05D005304 ORTHO05D004438 2.6e-07 58.9 69 46.4
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 2.6e-07 58.9 74 44.6
Gohir.A05G084500 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.6e-07 58.9 83 42.2
Glyma.20G190800 Glycine max HOM05D005304 ORTHO05D004438 3.4e-07 58.5 71 42.3
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 4.4e-07 58.2 105 34.3
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 5.8e-07 57.8 90 36.7
Glyma.10G199500 Glycine max HOM05D005304 ORTHO05D004438 5.8e-07 57.8 71 42.3
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 5.8e-07 57.8 90 35.6
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 5.8e-07 57.8 109 35.8
Thecc.10G090600 Theobroma cacao HOM05D005304 ORTHO05D004438 5.8e-07 57.8 110 34.5
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 5.8e-07 57.8 118 37.3
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 7.5e-07 57.4 87 43.7
Duzib128G0918 Durio zibethinus HOM05D005304 ORTHO05D004438 9.8e-07 57.0 112 32.1
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 9.8e-07 57.0 74 41.9
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 1.3e-06 56.6 122 35.2
CANSAT56G0274 Cannabis sativa HOM05D005304 ORTHO05D004438 1.3e-06 56.6 77 40.3
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 1.3e-06 56.6 109 31.2
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 1.3e-06 56.6 90 35.6
Manes.11G153500 Manihot esculenta HOM05D005304 ORTHO05D004438 1.3e-06 56.6 88 38.6
Cpa.g.sc128.74 Carica papaya HOM05D005304 ORTHO05D004438 1.7e-06 56.2 82 39.0
PGR044G1405 Punica granatum HOM05D005304 ORTHO05D004438 1.7e-06 56.2 76 38.2
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 1.7e-06 56.2 93 41.9
Eucgr.J01033 Eucalyptus grandis HOM05D005304 ORTHO05D004438 2.2e-06 55.8 69 44.9
Lj5g0009089 Lotus japonicus HOM05D005304 ORTHO05D004438 2.2e-06 55.8 69 46.4
Manes.04G012000 Manihot esculenta HOM05D005304 ORTHO05D004438 2.2e-06 55.8 74 41.9
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 2.2e-06 55.8 80 42.5
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 2.9e-06 55.5 120 37.5
Gohir.A05G393600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.9e-06 55.5 90 35.6
Nitab4.5_0001163g0010 Nicotiana tabacum HOM05D005304 ORTHO05D004438 2.9e-06 55.5 77 44.2
Sabra08G0019700 Salix brachista HOM05D005304 ORTHO05D004438 2.9e-06 55.5 90 44.4
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 3.7e-06 55.1 78 37.2
SalBow6G1975 Salvia bowleyana HOM05D005304 ORTHO05D004438 3.7e-06 55.1 114 36.0
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 4.9e-06 54.7 73 38.4
Ciclev10033091m.g Citrus clementina HOM05D005304 ORTHO05D004438 4.9e-06 54.7 61 44.3
Manes.10G053300 Manihot esculenta HOM05D005304 ORTHO05D004438 4.9e-06 54.7 111 35.1
Medtr1g090837 Medicago truncatula HOM05D005304 ORTHO05D004438 4.9e-06 54.7 76 42.1
Gohir.D07G102400 Gossypium hirsutum HOM05D005967 ORTHO05D005174 8.3e-06 53.9 79 45.6
Gorai.001G110300 Gossypium raimondii HOM05D005967 ORTHO05D005174 8.3e-06 53.9 78 43.6
TPR.G37843 Trifolium pratense HOM05D005304 ORTHO05D004438 8.3e-06 53.9 79 40.5


User provided reference genes

Program Settings