Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 0.0e+00 1239.6 644 100.0
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 0.0e+00 1149.0 645 93.6
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 0.0e+00 1124.4 644 92.5
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.2e-240 836.6 678 71.5
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 2.9e-237 825.5 691 69.2
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 3.7e-216 755.4 581 73.8
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 9.0e-207 724.2 602 70.9
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 9.5e-156 554.7 711 53.3
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 6.2e-147 525.4 714 51.3
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 9.6e-124 448.4 651 48.2
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 6.7e-109 399.1 613 46.7
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 3.7e-107 393.3 614 46.9
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 1.0e-88 332.0 715 39.9
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 2.7e-86 323.9 617 41.8
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 3.9e-85 320.1 773 37.3
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 2.4e-82 310.8 696 39.4
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 4.2e-79 300.1 701 38.9
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 2.0e-76 291.2 677 38.7
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 3.7e-75 287.0 667 39.1
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 4.1e-74 283.5 697 37.0
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 4.1e-74 283.5 748 34.1
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 5.3e-74 283.1 734 37.1
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 8.5e-72 275.8 546 43.0
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 1.5e-71 275.0 712 36.2
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 1.9e-71 274.6 665 38.8
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 9.4e-71 272.3 700 36.3
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 4.7e-70 270.0 571 41.0
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 6.1e-70 269.6 707 35.4
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 8.0e-70 269.2 582 41.9
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 1.0e-69 268.9 652 37.9
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 3.0e-69 267.3 697 36.7
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 1.5e-68 265.0 694 35.4
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 2.0e-68 264.6 707 35.9
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 4.4e-68 263.5 739 36.0
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 9.7e-68 262.3 591 39.9
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 1.3e-67 261.9 665 38.0
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 1.3e-67 261.9 736 35.6
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 1.7e-67 261.5 698 34.8
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 1.7e-67 261.5 737 35.4
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 4.8e-67 260.0 696 35.1
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 4.8e-67 260.0 705 35.0
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 6.3e-67 259.6 708 36.2
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 1.1e-66 258.8 611 39.4
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 5.3e-66 256.5 653 37.8
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 7.0e-66 256.1 461 44.0
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 1.2e-65 255.4 707 35.9
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 3.5e-65 253.8 590 40.2
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 1.3e-64 251.9 581 39.8
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 2.2e-64 251.1 725 35.6
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 1.9e-63 248.1 708 35.2
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 7.2e-63 246.1 610 36.7
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 7.2e-63 246.1 767 32.5
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 2.1e-62 244.6 541 40.1
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 6.1e-62 243.0 618 36.4
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 6.8e-61 239.6 598 34.9
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 3.4e-60 237.3 628 35.0
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 4.4e-60 236.9 654 36.7
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 4.4e-60 236.9 536 39.7
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 5.7e-60 236.5 630 37.0
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 5.7e-60 236.5 689 33.5
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 7.5e-60 236.1 772 32.1
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 9.8e-60 235.7 688 35.3
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 2.2e-59 234.6 666 34.4
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 3.7e-59 233.8 610 35.2
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 8.3e-59 232.6 688 34.4
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 1.1e-58 232.3 633 36.7
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 1.8e-58 231.5 612 35.8
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 2.4e-58 231.1 635 34.0
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 2.7e-57 227.6 774 32.9
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 5.9e-57 226.5 621 34.9
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 1.7e-56 224.9 597 35.5
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 1.2e-54 218.8 568 36.3
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 6.1e-54 216.5 635 34.5
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 3.0e-53 214.2 746 32.8
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 5.7e-52 209.9 584 34.9
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 1.7e-51 208.4 562 36.1
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 2.4e-50 204.5 612 32.5
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 5.4e-50 203.4 519 36.8
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 2.9e-48 197.6 689 31.9
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 1.1e-47 195.7 672 33.0
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 2.5e-47 194.5 594 33.5
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 1.5e-44 185.3 670 31.2
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 6.3e-43 179.9 836 29.2
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 8.3e-43 179.5 528 33.0
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 1.1e-42 179.1 298 45.0
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 1.1e-42 179.1 628 32.3
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 1.1e-42 179.1 514 35.4
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 1.4e-42 178.7 342 39.8
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 5.9e-41 173.3 578 31.7
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 1.5e-39 168.7 573 31.1
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 4.3e-39 167.2 571 31.3
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 7.3e-39 166.4 521 34.2
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 2.1e-38 164.9 591 30.5
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 4.7e-38 163.7 558 30.1
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 2.3e-37 161.4 520 33.7
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 5.2e-37 160.2 574 30.5
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 6.8e-37 159.8 576 30.2
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 2.0e-36 158.3 585 30.4
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 4.4e-36 157.1 532 31.0
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 1.7e-35 155.2 540 29.6
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 1.7e-35 155.2 540 29.6
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 2.9e-35 154.5 583 30.7
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 2.9e-35 154.5 601 29.3
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 4.9e-35 153.7 371 40.2
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 2.4e-34 151.4 551 30.9
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 2.0e-33 148.3 536 30.8
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 2.7e-33 147.9 471 32.3
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 4.3e-31 140.6 557 29.6
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 5.6e-31 140.2 525 28.8
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 7.3e-31 139.8 558 29.7
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 1.2e-30 139.0 558 29.7
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 2.8e-30 137.9 623 29.1
Haze_02594 Corylus avellana HOM05D005926 ORTHO05D007001 1.1e-29 136.0 400 33.2
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 2.6e-28 131.3 532 32.0
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 3.2e-26 124.4 545 28.6
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 8.9e-21 106.3 214 40.7
Oeu026567.1 Olea europaea HOM05D005926 ORTHO05D007001 3.4e-20 104.4 421 28.7
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 1.3e-19 102.4 365 32.1
ATR0820G003 Amborella trichopoda HOM05D005926 ORTHO05D007001 7.8e-17 93.2 572 26.9
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 6.6e-16 90.1 361 30.7
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 1.1e-15 89.4 280 34.6
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 1.1e-15 89.4 501 27.5
arahy.Tifrunner.gnm1.ann1.UA3HQT Arachis hypogaea HOM05D005926 ORTHO05D007001 1.1e-13 82.8 262 33.6
arahy.Tifrunner.gnm1.ann1.L8M84U Arachis hypogaea HOM05D005926 ORTHO05D007001 3.4e-12 77.8 262 33.2
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 7.6e-12 76.6 360 27.5
AagrBONN_evm.TU.Sc2ySwM_228.4811 Anthoceros agrestis HOM05D005926 ORTHO05D007001 2.2e-11 75.1 343 29.4
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 2.2e-11 75.1 141 38.3


User provided reference genes

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