Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g032840 Solanum pennellii HOM05D005099 ORTHO05D006087 2.8e-82 308.5 150 100.0
Nitab4.5_0011001g0010 Nicotiana tabacum HOM05D005099 ORTHO05D006087 3.7e-34 148.7 152 55.3
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 1.6e-29 133.3 200 45.0
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 2.3e-28 129.4 194 44.3
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 1.1e-27 127.1 186 41.4
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 3.3e-27 125.6 192 40.6
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 9.6e-27 124.0 189 40.7
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 2.8e-26 122.5 186 41.9
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 4.8e-26 121.7 187 42.2
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 4.8e-26 121.7 188 40.4
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 1.1e-25 120.6 180 42.2
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 1.4e-25 120.2 194 39.2
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 2.4e-25 119.4 191 40.3
Nitab4.5_0001097g0130 Nicotiana tabacum HOM05D005099 ORTHO05D006087 3.1e-25 119.0 132 53.0
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 4.0e-25 118.6 186 40.3
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 5.3e-25 118.2 190 40.0
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 6.9e-25 117.9 193 42.5
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 6.9e-25 117.9 192 43.8
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 1.5e-24 116.7 182 38.5
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 2.0e-24 116.3 180 42.8
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 3.4e-24 115.5 182 38.5
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 3.4e-24 115.5 197 38.1
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 4.5e-24 115.2 189 40.7
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 4.5e-24 115.2 183 39.9
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 7.6e-24 114.4 184 39.1
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.0e-23 114.0 192 42.7
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 2.9e-23 112.5 193 39.4
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 3.8e-23 112.1 187 38.0
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 3.8e-23 112.1 183 40.4
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 4.9e-23 111.7 181 40.9
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 6.5e-23 111.3 190 44.2
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 8.4e-23 110.9 188 37.2
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 1.1e-22 110.5 186 38.7
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 1.1e-22 110.5 186 38.7
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 1.1e-22 110.5 195 37.4
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 1.1e-22 110.5 187 36.9
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 1.9e-22 109.8 190 37.4
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 2.5e-22 109.4 190 38.4
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 2.5e-22 109.4 193 38.9
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 3.2e-22 109.0 169 41.4
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 4.2e-22 108.6 190 37.9
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 4.2e-22 108.6 184 38.0
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 5.5e-22 108.2 192 37.5
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 7.1e-22 107.8 181 38.7
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 7.1e-22 107.8 195 37.4
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 7.1e-22 107.8 183 40.4
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 7.1e-22 107.8 198 38.9
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 9.3e-22 107.5 187 38.0
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 9.3e-22 107.5 191 37.7
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 1.2e-21 107.1 194 38.1
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 1.2e-21 107.1 181 38.7
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 1.2e-21 107.1 188 40.4
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 1.6e-21 106.7 186 42.5
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 3.0e-20 102.4 189 38.6
Solyc01g066440.3 Solanum lycopersicum HOM05D005099 ORTHO05D006087 3.0e-20 102.4 188 40.4
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 1.1e-19 100.5 176 40.9
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 1.5e-19 100.1 187 38.0
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.5e-19 100.1 187 38.0
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.5e-19 100.1 187 38.0
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 1.5e-19 100.1 194 37.6
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 1.5e-19 100.1 201 35.3
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 1.9e-19 99.8 180 36.7
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 1.9e-19 99.8 193 35.8
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 7.4e-19 97.8 183 36.1
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 7.4e-19 97.8 182 39.0
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 9.7e-19 97.4 180 39.4
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 1.6e-18 96.7 184 36.4
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 1.6e-18 96.7 183 36.1
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 2.8e-18 95.9 186 35.5
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 6.3e-18 94.7 200 36.0
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 8.2e-18 94.4 184 35.3
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 1.1e-17 94.0 187 36.4
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 1.4e-17 93.6 175 37.7
Aqoxy2G02900 Aquilegia oxysepala HOM05D005099 ORTHO05D006087 1.8e-17 93.2 190 36.3
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 1.8e-17 93.2 191 36.6
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 3.1e-17 92.4 181 36.5
Oeu053996.1 Olea europaea HOM05D005099 ORTHO05D006087 3.1e-17 92.4 181 37.6
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 4.1e-17 92.0 182 37.4
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 4.1e-17 92.0 188 36.2
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 4.1e-17 92.0 187 35.8
MD13G1165200 Malus domestica HOM05D005099 ORTHO05D006087 5.3e-17 91.7 195 34.4
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 5.3e-17 91.7 211 35.1
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 1.2e-16 90.5 188 34.0
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 1.5e-16 90.1 126 43.7
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 1.5e-16 90.1 212 33.0
Thhalv10004959m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 1.5e-16 90.1 207 34.8
Hund24882 Selenicereus undatus HOM05D005099 ORTHO05D006087 1.5e-16 90.1 192 35.4
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 2.0e-16 89.7 172 36.0
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 2.0e-16 89.7 186 34.4
Lj6g0002623 Lotus japonicus HOM05D005099 ORTHO05D006087 2.6e-16 89.4 188 34.0
BNapus_Darmor_BZH_scaffold_117p00120 Brassica napus HOM05D005099 ORTHO05D006087 3.4e-16 89.0 191 35.1
BraA01t04411Z Brassica rapa HOM05D005099 ORTHO05D006087 3.4e-16 89.0 191 35.1
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 3.4e-16 89.0 178 34.8
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 3.4e-16 89.0 178 34.8
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 3.4e-16 89.0 178 34.8
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 7.6e-16 87.8 126 42.1
Thhalv10021591m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 7.6e-16 87.8 192 35.4
arahy.Tifrunner.gnm1.ann1.L8YWMY Arachis hypogaea HOM05D005099 ORTHO05D006087 1.7e-15 86.7 182 36.8
CARHR182490 Cardamine hirsuta HOM05D005099 ORTHO05D006087 1.7e-15 86.7 189 33.9
arahy.Tifrunner.gnm1.ann1.H54SCY Arachis hypogaea HOM05D005099 ORTHO05D006087 2.9e-15 85.9 182 36.8
BcaC09g47923 Brassica carinata HOM05D005099 ORTHO05D006087 2.9e-15 85.9 191 34.6
BolC1t05583H Brassica oleracea HOM05D005099 ORTHO05D006087 2.9e-15 85.9 191 34.6
Gohir.D09G238500 Gossypium hirsutum HOM05D005099 ORTHO05D006087 2.9e-15 85.9 192 37.5
DCAR_023299 Daucus carota HOM05D005099 ORTHO05D006087 5.0e-15 85.1 177 36.7
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 1.4e-14 83.6 172 34.9
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 1.9e-14 83.2 177 37.9
Lsat_1_v5_gn_3_21720 Lactuca sativa HOM05D005099 ORTHO05D006087 3.2e-14 82.4 189 33.3
DCAR_002480 Daucus carota HOM05D005099 ORTHO05D006087 9.3e-14 80.9 195 32.8
Psat1g155760 Pisum sativum HOM05D005099 ORTHO05D006087 1.2e-13 80.5 194 32.0
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 1.6e-13 80.1 193 33.2
AL8G22700 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 7.9e-13 77.8 199 33.2
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 7.9e-13 77.8 198 32.3
Sed0015120 Sechium edule HOM05D005099 ORTHO05D006087 1.8e-12 76.6 180 33.9
Gohir.A09G237600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 3.9e-12 75.5 209 35.4
Lalb_Chr20g0117371 Lupinus albus HOM05D005099 ORTHO05D006087 3.9e-12 75.5 190 30.0
AT5G49170 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 6.7e-12 74.7 204 32.4
BraA02t08775Z Brassica rapa HOM05D005099 ORTHO05D006087 2.5e-11 72.8 192 32.3
PSO170G0513 Papaver somniferum HOM05D005099 ORTHO05D006087 4.3e-11 72.0 208 32.7
A02p37910 Brassica napus HOM05D005099 ORTHO05D006087 9.7e-11 70.9 191 32.5
BcaB07g34138 Brassica carinata HOM05D005099 ORTHO05D006087 1.7e-10 70.1 192 29.7
GSVIVG01035110001 Vitis vinifera HOM05D005099 ORTHO05D006087 1.7e-10 70.1 89 44.9
BraA06t26768Z Brassica rapa HOM05D005099 ORTHO05D006087 2.8e-10 69.3 200 31.5
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 2.8e-10 69.3 200 30.5
BcaC03g17704 Brassica carinata HOM05D005099 ORTHO05D006087 3.7e-10 68.9 191 31.4
C02p57110 Brassica napus HOM05D005099 ORTHO05D006087 3.7e-10 68.9 191 31.4
BolC2t11783H Brassica oleracea HOM05D005099 ORTHO05D006087 3.7e-10 68.9 191 31.4
Gorai.006G261200 Gossypium raimondii HOM05D005099 ORTHO05D006087 4.8e-10 68.6 208 32.2
Carub.0008s0899 Capsella rubella HOM05D005099 ORTHO05D006087 2.4e-09 66.2 209 31.1
Oeu035687.1 Olea europaea HOM05D005099 ORTHO05D006087 2.4e-09 66.2 198 31.3
MD13G1165100 Malus domestica HOM05D005099 ORTHO05D006087 9.1e-09 64.3 80 46.2
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 2.6e-08 62.8 174 31.6
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 2.6e-08 62.8 99 39.4
Cpa.g.sc50.167 Carica papaya HOM05D005099 ORTHO05D006087 5.9e-08 61.6 122 34.4
SHI00249 Sapria himalayana HOM05D005099 ORTHO05D006087 4.2e-06 55.5 182 28.0


User provided reference genes

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