Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 1.3e-126 456.4 232 100.0
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 1.2e-124 449.9 232 98.3
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 1.1e-119 433.3 232 94.4
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 1.8e-112 409.5 232 87.9
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 2.7e-105 385.6 232 82.8
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 1.2e-100 370.2 261 73.9
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 1.2e-95 353.6 254 74.0
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 7.3e-74 281.2 235 63.4
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 6.2e-73 278.1 235 60.4
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 5.8e-71 271.6 186 72.6
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 4.9e-70 268.5 237 59.9
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 4.1e-69 265.4 238 57.1
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 9.2e-69 264.2 231 60.6
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 2.7e-68 262.7 228 60.1
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 1.7e-67 260.0 235 57.9
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 8.6e-67 257.7 234 56.4
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 2.5e-66 256.1 218 60.6
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 4.3e-66 255.4 207 61.8
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 7.3e-66 254.6 227 55.5
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 1.2e-65 253.8 229 56.8
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 2.1e-65 253.1 233 56.2
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 2.1e-65 253.1 232 56.5
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 4.0e-64 248.8 228 56.1
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 4.0e-64 248.8 232 55.2
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 5.2e-64 248.4 182 64.8
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 2.0e-63 246.5 232 56.0
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 4.4e-63 245.4 227 55.5
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 4.4e-63 245.4 230 57.0
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 9.9e-63 244.2 230 52.6
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 1.3e-62 243.8 192 61.5
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 1.3e-62 243.8 231 51.9
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 2.2e-62 243.0 227 53.7
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 2.2e-62 243.0 192 60.9
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 2.9e-62 242.7 233 55.4
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 3.8e-62 242.3 229 52.0
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 4.9e-62 241.9 231 53.2
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 6.4e-62 241.5 230 56.5
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 6.4e-62 241.5 229 56.3
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 1.4e-61 240.4 227 56.8
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 7.1e-61 238.0 230 51.7
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 9.2e-61 237.7 229 55.0
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 1.2e-60 237.3 230 55.2
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 1.2e-60 237.3 192 58.9
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 1.6e-60 236.9 231 54.5
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 1.6e-60 236.9 231 53.2
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 1.6e-60 236.9 186 60.2
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 2.7e-60 236.1 234 53.0
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 4.6e-60 235.3 232 52.2
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 6.0e-60 235.0 228 53.1
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 7.8e-60 234.6 231 54.5
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 7.8e-60 234.6 230 52.2
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 7.8e-60 234.6 197 57.4
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 2.3e-59 233.0 227 52.4
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 2.3e-59 233.0 201 56.2
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 3.0e-59 232.6 233 51.1
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 3.0e-59 232.6 217 54.8
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 3.9e-59 232.3 235 54.5
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 3.9e-59 232.3 229 50.2
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 5.1e-59 231.9 182 62.1
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 5.1e-59 231.9 227 52.0
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 6.6e-59 231.5 231 52.8
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 6.6e-59 231.5 228 50.0
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 8.7e-59 231.1 227 51.5
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 8.7e-59 231.1 227 51.5
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 8.7e-59 231.1 227 51.5
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 8.7e-59 231.1 230 49.6
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 1.1e-58 230.7 227 49.8
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 1.5e-58 230.3 229 52.0
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 1.9e-58 229.9 232 52.2
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 1.9e-58 229.9 232 51.7
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 2.5e-58 229.6 228 50.0
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 3.3e-58 229.2 192 55.2
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 4.3e-58 228.8 230 50.9
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 1.2e-57 227.3 182 57.1
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 1.6e-57 226.9 183 55.2
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 2.1e-57 226.5 192 57.3
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 2.8e-57 226.1 228 48.7
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 6.2e-57 224.9 230 52.2
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 1.1e-56 224.2 227 50.2
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 1.4e-56 223.8 192 52.6
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 1.4e-56 223.8 192 55.7
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 4.0e-56 222.2 183 56.3
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 6.9e-56 221.5 227 50.7
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 1.2e-55 220.7 185 61.1
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 1.2e-55 220.7 230 53.9
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 2.0e-55 219.9 231 49.8
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 4.4e-55 218.8 228 51.8
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 5.8e-55 218.4 183 54.6
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 5.8e-55 218.4 183 54.6
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 7.6e-55 218.0 244 48.0
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 7.6e-55 218.0 231 50.2
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 7.6e-55 218.0 183 54.1
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 7.6e-55 218.0 183 54.1
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 7.6e-55 218.0 183 54.1
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 1.3e-54 217.2 131 83.2
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 1.7e-54 216.9 229 51.5
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 1.7e-54 216.9 228 51.3
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 2.9e-54 216.1 232 50.9
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 6.4e-54 214.9 201 56.7
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 1.4e-53 213.8 151 72.2
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 3.2e-53 212.6 183 53.0
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 9.3e-53 211.1 235 47.2
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 4.6e-52 208.8 233 48.1
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.7e-51 206.8 245 45.7
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 2.3e-51 206.5 245 45.7
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 2.3e-51 206.5 194 55.2
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 3.9e-51 205.7 196 54.1
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 8.7e-51 204.5 244 43.9
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.1e-50 204.1 245 45.3
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 4.3e-50 202.2 152 61.2
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.8e-48 196.8 177 54.8
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 1.8e-48 196.8 152 60.5
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 2.4e-48 196.4 231 45.5
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.6e-47 193.0 263 41.8
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 2.6e-47 193.0 197 48.7
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 1.3e-46 190.7 124 74.2
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 1.7e-46 190.3 183 50.3
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 2.2e-46 189.9 193 51.3
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 2.4e-45 186.4 250 44.4
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 4.2e-45 185.7 183 48.6
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 3.9e-43 179.1 229 43.7
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 3.3e-42 176.0 147 55.1
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 1.6e-41 173.7 229 43.2
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 5.3e-40 168.7 142 54.9
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 9.0e-40 167.9 116 75.0
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 9.9e-39 164.5 231 42.9
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 8.4e-38 161.4 260 39.6
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 4.2e-37 159.1 203 43.8
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 4.2e-37 159.1 154 52.6
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 2.3e-35 153.3 232 40.5
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 6.7e-35 151.8 242 38.0
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 1.0e-30 137.9 235 36.6
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 3.8e-30 136.0 226 36.7
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 6.5e-30 135.2 199 38.7
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 1.9e-29 133.7 215 37.7
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 5.0e-22 109.0 74 70.3
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 3.6e-20 102.8 142 41.5
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 2.4e-16 90.1 88 50.0
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 1.9e-13 80.5 95 44.2
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 1.0e-11 74.7 58 53.4
CBR_g74690 Chara braunii HOM05D004951 ORTHO05D005840 2.0e-10 70.5 142 30.3
PRCOL_00000152 Prasinoderma coloniale HOM05D004951 ORTHO05D005840 2.6e-07 60.1 161 28.6
Cre02.g086750 Chlamydomonas reinhardtii HOM05D004951 ORTHO05D005840 4.5e-07 59.3 175 23.4


User provided reference genes

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