Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g032590 Solanum pennellii HOM05D003856 ORTHO05D004547 2.5e-136 488.8 248 100.0
PGSC0003DMG400008443 Solanum tuberosum HOM05D003856 ORTHO05D004547 2.5e-136 488.8 248 100.0
Solyc05g054100.3 Solanum lycopersicum HOM05D003856 ORTHO05D004547 1.6e-135 486.1 248 99.6
CAN.G449.18 Capsicum annuum HOM05D003856 ORTHO05D004547 1.1e-133 479.9 248 97.6
Nitab4.5_0004406g0030 Nicotiana tabacum HOM05D003856 ORTHO05D004547 1.7e-129 466.1 248 94.4
Cc09_g00840 Coffea canephora HOM05D003856 ORTHO05D004547 4.7e-127 458.0 248 93.1
Lj2A261T38 Lonicera japonica HOM05D003856 ORTHO05D004547 6.7e-126 454.1 248 92.7
Aqoxy1G04060 Aquilegia oxysepala HOM05D003856 ORTHO05D004547 8.8e-126 453.8 248 91.1
Nitab4.5_0001735g0170 Nicotiana tabacum HOM05D003856 ORTHO05D004547 1.5e-125 453.0 248 92.3
Atru.chr1.2436 Acer truncatum HOM05D003856 ORTHO05D004547 2.0e-125 452.6 248 89.9
Atru.chr1.2438 Acer truncatum HOM05D003856 ORTHO05D004547 2.0e-125 452.6 248 89.9
ECA248G1273 Erigeron canadensis HOM05D003856 ORTHO05D004547 2.6e-125 452.2 244 92.6
Lsat_1_v5_gn_4_61900 Lactuca sativa HOM05D003856 ORTHO05D004547 4.4e-125 451.4 248 91.1
TWI38G2230 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 5.7e-125 451.1 248 89.9
HanXRQChr01g0006771 Helianthus annuus HOM05D003856 ORTHO05D004547 7.4e-125 450.7 244 92.2
Migut.M01400 Erythranthe guttata HOM05D003856 ORTHO05D004547 9.7e-125 450.3 248 92.3
SalBow1G0666 Salvia bowleyana HOM05D003856 ORTHO05D004547 9.7e-125 450.3 247 92.3
SalBow8G1854 Salvia bowleyana HOM05D003856 ORTHO05D004547 1.3e-124 449.9 247 91.5
Hma1.2p1_0657F.1_g197110 Hydrangea macrophylla HOM05D003856 ORTHO05D004547 2.2e-124 449.1 248 91.1
TAR627G0499 Trochodendron aralioides HOM05D003856 ORTHO05D004547 2.8e-124 448.7 248 91.1
TAR627G1166 Trochodendron aralioides HOM05D003856 ORTHO05D004547 2.8e-124 448.7 248 91.1
PGR004G0563 Punica granatum HOM05D003856 ORTHO05D004547 3.7e-124 448.4 246 91.9
Actinidia02310 Actinidia chinensis HOM05D003856 ORTHO05D004547 4.8e-124 448.0 248 91.5
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 6.3e-124 447.6 246 92.3
Thecc.06G233900 Theobroma cacao HOM05D003856 ORTHO05D004547 6.3e-124 447.6 248 89.9
MBI16_g31714_MAGBIO Magnolia biondii HOM05D003856 ORTHO05D004547 1.1e-123 446.8 248 91.5
Eucgr.D01412 Eucalyptus grandis HOM05D003856 ORTHO05D004547 1.4e-123 446.4 248 90.3
Actinidia26855 Actinidia chinensis HOM05D003856 ORTHO05D004547 2.4e-123 445.7 248 91.5
QL05p069616 Quercus lobata HOM05D003856 ORTHO05D004547 2.4e-123 445.7 246 89.8
CANSAT56G3590 Cannabis sativa HOM05D003856 ORTHO05D004547 3.1e-123 445.3 246 90.2
Dinv07408 Davidia involucrata HOM05D003856 ORTHO05D004547 3.1e-123 445.3 246 91.5
Ciclev10016420m.g Citrus clementina HOM05D003856 ORTHO05D004547 5.3e-123 444.5 248 89.5
TAR626G0303 Trochodendron aralioides HOM05D003856 ORTHO05D004547 5.3e-123 444.5 246 90.2
Sc17g0007760 Simmondsia chinensis HOM05D003856 ORTHO05D004547 7.0e-123 444.1 248 90.3
HanXRQChr10g0285161 Helianthus annuus HOM05D003856 ORTHO05D004547 1.2e-122 443.4 244 90.2
Potri.016G013100 Populus trichocarpa HOM05D003856 ORTHO05D004547 1.2e-122 443.4 248 88.7
Lsat_1_v5_gn_0_29081 Lactuca sativa HOM05D003856 ORTHO05D004547 2.0e-122 442.6 244 90.6
CiPaw.09G102800 Carya illinoinensis HOM05D003856 ORTHO05D004547 2.6e-122 442.2 248 89.5
Duzib235G1167 Durio zibethinus HOM05D003856 ORTHO05D004547 2.6e-122 442.2 248 88.7
A09p26760 Brassica napus HOM05D003856 ORTHO05D004547 3.4e-122 441.8 248 89.5
C09p33910 Brassica napus HOM05D003856 ORTHO05D004547 3.4e-122 441.8 248 89.5
BolC9t56227H Brassica oleracea HOM05D003856 ORTHO05D004547 3.4e-122 441.8 248 89.5
BraA09t38248Z Brassica rapa HOM05D003856 ORTHO05D004547 3.4e-122 441.8 248 89.5
CSS0032798 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 3.4e-122 441.8 248 89.5
Hund06997 Selenicereus undatus HOM05D003856 ORTHO05D004547 3.4e-122 441.8 248 89.5
THA.LOC104812995 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 3.4e-122 441.8 248 89.5
Cfa010272 Carpinus fangiana HOM05D003856 ORTHO05D004547 4.5e-122 441.4 248 89.9
Potri.006G011500 Populus trichocarpa HOM05D003856 ORTHO05D004547 4.5e-122 441.4 248 87.9
RcHm_v2.0_Chr5g0001451 Rosa chinensis HOM05D003856 ORTHO05D004547 4.5e-122 441.4 248 89.9
Nn1g07399 Nelumbo nucifera HOM05D003856 ORTHO05D004547 1.0e-121 440.3 248 88.7
BcaC04g21245 Brassica carinata HOM05D003856 ORTHO05D004547 1.3e-121 439.9 248 89.1
Manes.08G069500 Manihot esculenta HOM05D003856 ORTHO05D004547 1.3e-121 439.9 248 89.5
EL10Ac8g20193 Beta vulgaris HOM05D003856 ORTHO05D004547 1.7e-121 439.5 247 90.3
CiPaw.10G078300 Carya illinoinensis HOM05D003856 ORTHO05D004547 1.7e-121 439.5 248 88.7
FAN25G1896 Fragaria x ananassa HOM05D003856 ORTHO05D004547 2.2e-121 439.1 248 88.7
SGA_v2.0_scaffold4G01871 Striga asiatica HOM05D003856 ORTHO05D004547 2.2e-121 439.1 245 90.2
Haze_06930 Corylus avellana HOM05D003856 ORTHO05D004547 2.9e-121 438.7 248 89.1
FvH4_3g00930 Fragaria vesca HOM05D003856 ORTHO05D004547 2.9e-121 438.7 247 88.7
MD05G1358200 Malus domestica HOM05D003856 ORTHO05D004547 2.9e-121 438.7 248 89.5
Rhsim02G0099500 Rhododendron simsii HOM05D003856 ORTHO05D004547 2.9e-121 438.7 269 83.6
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 3.8e-121 438.3 248 89.9
arahy.Tifrunner.gnm1.ann1.ZZ9Q5Y Arachis hypogaea HOM05D003856 ORTHO05D004547 3.8e-121 438.3 248 89.9
MSTRG.7166 Avicennia marina HOM05D003856 ORTHO05D004547 3.8e-121 438.3 246 89.8
Gohir.D10G008700 Gossypium hirsutum HOM05D003856 ORTHO05D004547 5.0e-121 438.0 248 89.1
Gorai.011G009500 Gossypium raimondii HOM05D003856 ORTHO05D004547 5.0e-121 438.0 248 89.1
THA.LOC104813601 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 5.0e-121 438.0 248 88.3
arahy.Tifrunner.gnm1.ann1.D1JSNC Arachis hypogaea HOM05D003856 ORTHO05D004547 6.5e-121 437.6 248 89.5
BcaB03g11729 Brassica carinata HOM05D003856 ORTHO05D004547 6.5e-121 437.6 246 89.8
C03p84130 Brassica napus HOM05D003856 ORTHO05D004547 6.5e-121 437.6 248 89.5
BolC3t20692H Brassica oleracea HOM05D003856 ORTHO05D004547 6.5e-121 437.6 248 89.5
arahy.Tifrunner.gnm1.ann1.GCV40F Arachis hypogaea HOM05D003856 ORTHO05D004547 8.5e-121 437.2 248 89.1
Cpa.g.sc75.112 Carica papaya HOM05D003856 ORTHO05D004547 8.5e-121 437.2 248 89.9
MD10G1332300 Malus domestica HOM05D003856 ORTHO05D004547 8.5e-121 437.2 248 89.1
Duzib192G0794 Durio zibethinus HOM05D003856 ORTHO05D004547 1.1e-120 436.8 248 88.3
AT4G12590 Arabidopsis thaliana HOM05D003856 ORTHO05D004547 1.4e-120 436.4 248 87.9
BcaC01g00774 Brassica carinata HOM05D003856 ORTHO05D004547 1.4e-120 436.4 248 89.1
A08p15680 Brassica napus HOM05D003856 ORTHO05D004547 1.4e-120 436.4 248 89.1
Gohir.D10G008800 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.9e-120 436.0 248 88.3
Gorai.011G009600 Gossypium raimondii HOM05D003856 ORTHO05D004547 1.9e-120 436.0 248 88.3
Ah.14g087610 Amaranthus hybridus HOM05D003856 ORTHO05D004547 3.2e-120 435.3 247 88.3
Gohir.A10G009100 Gossypium hirsutum HOM05D003856 ORTHO05D004547 3.2e-120 435.3 248 88.3
AL6G47550 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 4.2e-120 434.9 248 87.5
BcaB01g01755 Brassica carinata HOM05D003856 ORTHO05D004547 4.2e-120 434.9 248 87.9
BraA08t33548Z Brassica rapa HOM05D003856 ORTHO05D004547 4.2e-120 434.9 248 88.7
Carub.0006s3186 Capsella rubella HOM05D003856 ORTHO05D004547 7.2e-120 434.1 248 87.1
C01p16660 Brassica napus HOM05D003856 ORTHO05D004547 9.4e-120 433.7 248 87.9
Glyma.18G075400 Glycine max HOM05D003856 ORTHO05D004547 1.2e-119 433.3 248 88.7
Lj5g0025471 Lotus japonicus HOM05D003856 ORTHO05D004547 1.2e-119 433.3 248 88.3
PSO541G3298 Papaver somniferum HOM05D003856 ORTHO05D004547 1.2e-119 433.3 247 88.7
FAN21G0260 Fragaria x ananassa HOM05D003856 ORTHO05D004547 1.6e-119 433.0 253 87.0
A01p13750 Brassica napus HOM05D003856 ORTHO05D004547 2.1e-119 432.6 248 87.9
BraA01t01320Z Brassica rapa HOM05D003856 ORTHO05D004547 2.1e-119 432.6 248 87.9
Sed0026067 Sechium edule HOM05D003856 ORTHO05D004547 2.1e-119 432.6 248 87.1
CDE06G2351 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 2.7e-119 432.2 246 87.4
ClCG01G010160 Citrullus lanatus HOM05D003856 ORTHO05D004547 2.7e-119 432.2 248 86.7
CsaV3_1G017260 Cucumis sativus L. HOM05D003856 ORTHO05D004547 2.7e-119 432.2 248 87.1
AL7G31210 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 3.6e-119 431.8 248 87.1
CDE04G3203 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 3.6e-119 431.8 246 87.8
PSO675G7111 Papaver somniferum HOM05D003856 ORTHO05D004547 3.6e-119 431.8 247 88.3
Lalb_Chr06g0168331 Lupinus albus HOM05D003856 ORTHO05D004547 4.7e-119 431.4 248 87.9
Prupe.4G009900 Prunus persica HOM05D003856 ORTHO05D004547 4.7e-119 431.4 245 89.0
Aa31LG9G10060 Aethionema arabicum HOM05D003856 ORTHO05D004547 6.1e-119 431.0 248 87.1
Thhalv10026090m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 6.1e-119 431.0 248 87.5
Glyma.08G331200 Glycine max HOM05D003856 ORTHO05D004547 6.1e-119 431.0 248 88.3
CARHR253580 Cardamine hirsuta HOM05D003856 ORTHO05D004547 8.0e-119 430.6 248 87.9
Gohir.A10G009000 Gossypium hirsutum HOM05D003856 ORTHO05D004547 8.0e-119 430.6 248 88.3
VMungo0540G0895 Vigna mungo HOM05D003856 ORTHO05D004547 8.0e-119 430.6 248 87.9
BolC1t01613H Brassica oleracea HOM05D003856 ORTHO05D004547 1.0e-118 430.3 248 87.5
Thhalv10028913m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 1.4e-118 429.9 248 87.1
TWI63G1684 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 1.4e-118 429.9 290 76.6
Sed0028227 Sechium edule HOM05D003856 ORTHO05D004547 2.3e-118 429.1 248 86.3
Phvul.006G059000 Phaseolus vulgaris HOM05D003856 ORTHO05D004547 3.0e-118 428.7 248 87.9
Sp6g04920 Schrenkiella parvula HOM05D003856 ORTHO05D004547 3.0e-118 428.7 248 86.3
Sp7g20520 Schrenkiella parvula HOM05D003856 ORTHO05D004547 3.0e-118 428.7 248 87.1
Ca_10008_v3 Cicer arietinum L. HOM05D003856 ORTHO05D004547 3.9e-118 428.3 249 87.6
DCAR_027821 Daucus carota HOM05D003856 ORTHO05D004547 3.9e-118 428.3 287 79.4
Lalb_Chr02g0149201 Lupinus albus HOM05D003856 ORTHO05D004547 3.9e-118 428.3 248 87.5
Peaxi162Scf00990g00017 Petunia axillaris HOM05D003856 ORTHO05D004547 8.8e-118 427.2 248 88.7
CARHR229320 Cardamine hirsuta HOM05D003856 ORTHO05D004547 2.0e-117 426.0 249 86.7
BcaC09g51102 Brassica carinata HOM05D003856 ORTHO05D004547 3.7e-116 421.8 249 86.3
Oeu009395.1 Olea europaea HOM05D003856 ORTHO05D004547 1.4e-115 419.9 306 71.9
Nn1g03306 Nelumbo nucifera HOM05D003856 ORTHO05D004547 2.4e-115 419.1 236 89.0
unitig_61.g26092 Utricularia gibba HOM05D003856 ORTHO05D004547 3.1e-115 418.7 261 83.1
Psat6g143120 Pisum sativum HOM05D003856 ORTHO05D004547 1.2e-114 416.8 249 85.1
Medtr1g079890 Medicago truncatula HOM05D003856 ORTHO05D004547 3.5e-114 415.2 249 84.7
TPR.G32278 Trifolium pratense HOM05D003856 ORTHO05D004547 1.3e-113 413.3 249 85.1
Zm00001eb102120 Zea mays HOM05D003856 ORTHO05D004547 1.9e-112 409.5 250 82.4
Pp3c11_24600 Physcomitrium patens HOM05D003856 ORTHO05D004547 1.4e-110 403.3 253 80.6
Sabra06G0009100 Salix brachista HOM05D003856 ORTHO05D004547 4.0e-110 401.7 335 65.7
Mapoly0029s0061 Marchantia polymorpha HOM05D003856 ORTHO05D004547 6.7e-110 401.0 252 81.0
AagrBONN_evm.TU.Sc2ySwM_362.305 Anthoceros agrestis HOM05D003856 ORTHO05D004547 1.2e-109 400.2 246 81.7
Os09g0497400 Oryza sativa ssp. japonica HOM05D003856 ORTHO05D004547 1.2e-109 400.2 250 80.4
Pp3c7_950 Physcomitrium patens HOM05D003856 ORTHO05D004547 1.7e-108 396.4 253 79.1
SMO239G0047 Selaginella moellendorffii HOM05D003856 ORTHO05D004547 1.4e-107 393.3 252 77.4
GSVIVG01003331001 Vitis vinifera HOM05D003856 ORTHO05D004547 3.5e-106 388.7 209 90.9
GSVIVG01003337001 Vitis vinifera HOM05D003856 ORTHO05D004547 3.5e-106 388.7 209 90.9
Sabra16G0002300 Salix brachista HOM05D003856 ORTHO05D004547 1.3e-105 386.7 215 89.3
Haze_06937 Corylus avellana HOM05D003856 ORTHO05D004547 2.1e-103 379.4 267 75.7
vmacro15762 Vaccinium macrocarpon HOM05D003856 ORTHO05D004547 2.0e-101 372.9 360 59.2
ATR0712G091 Amborella trichopoda HOM05D003856 ORTHO05D004547 2.7e-98 362.5 214 85.5
Lj1C1240G8 Lonicera japonica HOM05D003856 ORTHO05D004547 4.1e-91 338.6 198 88.4
SHI24455 Sapria himalayana HOM05D003856 ORTHO05D004547 7.8e-90 334.3 246 71.1
Nitab4.5_0003626g0020 Nicotiana tabacum HOM05D003856 ORTHO05D004547 6.1e-87 324.7 246 70.3
Gorai.013G129800 Gossypium raimondii HOM05D003856 ORTHO05D004547 2.6e-85 319.3 248 69.8
AUR62012797 Chenopodium quinoa HOM05D003856 ORTHO05D004547 9.5e-80 300.8 173 90.2
MELO3C021687.2 Cucumis melo HOM05D003856 ORTHO05D004547 2.8e-79 299.3 180 84.4
CSS0048239 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 3.6e-79 298.9 165 88.5
AUR62021855 Chenopodium quinoa HOM05D003856 ORTHO05D004547 3.6e-79 298.9 173 89.6
Lalb_Chr21g0311231 Lupinus albus HOM05D003856 ORTHO05D004547 3.1e-78 295.8 169 85.8
HPP92_000415 Vanilla planifolia HOM05D003856 ORTHO05D004547 2.3e-70 269.6 281 54.8
MCO07G661 Micromonas commoda HOM05D003856 ORTHO05D004547 3.1e-62 242.7 242 50.4
SEGI_40422 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 2.3e-57 226.5 139 82.0
Haze_26609 Corylus avellana HOM05D003856 ORTHO05D004547 9.6e-48 194.5 233 44.2
Gorai.012G047500 Gossypium raimondii HOM05D003856 ORTHO05D004547 8.1e-47 191.4 248 50.0
Cre09.g400400 Chlamydomonas reinhardtii HOM05D003856 ORTHO05D004547 5.3e-46 188.7 249 43.0
MD10G1332200 Malus domestica HOM05D003856 ORTHO05D004547 3.2e-43 179.5 100 88.0
SEGI_31097 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 6.7e-41 171.8 97 85.6
Carub.0007s1888 Capsella rubella HOM05D003856 ORTHO05D004547 3.1e-38 162.9 200 53.5
CSS0021523 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 3.5e-34 149.4 165 52.7
COL.COLO4_31891 Corchorus olitorius HOM05D003856 ORTHO05D004547 5.3e-30 135.6 141 54.6
Lalb_Chr21g0311241 Lupinus albus HOM05D003856 ORTHO05D004547 7.1e-27 125.2 83 78.3
C01p16690 Brassica napus HOM05D003856 ORTHO05D004547 2.1e-26 123.6 84 72.6
CARHR290760 Cardamine hirsuta HOM05D003856 ORTHO05D004547 1.3e-25 120.9 83 73.5
PRCOL_00006309 Prasinoderma coloniale HOM05D003856 ORTHO05D004547 1.5e-24 117.5 230 36.5
AL649U10020 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 3.3e-24 116.3 83 75.9
Carub.0008s0836 Capsella rubella HOM05D003856 ORTHO05D004547 1.6e-23 114.0 216 41.2
CBR_g38137 Chara braunii HOM05D003856 ORTHO05D004547 8.5e-20 101.7 99 48.5
Migut.L00276 Erythranthe guttata HOM05D003856 ORTHO05D004547 6.7e-17 92.0 51 84.3
COL.COLO4_31890 Corchorus olitorius HOM05D003856 ORTHO05D004547 2.0e-16 90.5 58 82.8
Oeu040759.1 Olea europaea HOM05D003856 ORTHO05D004547 2.5e-16 90.1 52 84.6
vmacro04321 Vaccinium macrocarpon HOM05D004428 ORTHO05D013648 9.1e-14 81.6 77 61.0
Hund21152 Selenicereus undatus HOM05D003856 ORTHO05D004547 1.2e-13 81.3 46 78.3
HPP92_000455 Vanilla planifolia HOM05D003856 ORTHO05D004547 7.7e-13 78.6 52 80.8
Dinv13969 Davidia involucrata HOM05D003856 ORTHO05D004547 2.9e-12 76.6 79 55.7
Ah.14g078790 Amaranthus hybridus HOM05D006286 ORTHO05D007741 1.6e-10 70.9 38 84.2
vmacro16921 Vaccinium macrocarpon HOM05D000007 ORTHO05D013648 1.4e-09 67.8 106 46.2
Rhsim07G0218800 Rhododendron simsii HOM05D003856 ORTHO05D013648 1.8e-09 67.4 91 49.5
FAN07G2353 Fragaria x ananassa HOM05D003856 ORTHO05D004547 7.4e-08 62.0 45 75.6
Rhsim07G0218900 Rhododendron simsii HOM05D003856 ORTHO05D013648 6.3e-07 58.9 99 43.4
A05p11440 Brassica napus HOM05D003856 ORTHO05D004547 1.1e-06 58.2 36 69.4
C04p14930 Brassica napus HOM05D003856 ORTHO05D004547 1.1e-06 58.2 36 69.4
BraA05t20093Z Brassica rapa HOM05D003856 ORTHO05D004547 1.1e-06 58.2 36 69.4


User provided reference genes

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