Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 1.6e-85 319.7 201 100.0
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 4.7e-85 318.2 201 99.5
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 1.1e-81 307.0 201 97.0
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 2.3e-55 219.5 201 78.1
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 5.4e-49 198.4 205 59.5
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 1.6e-48 196.8 201 70.1
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 1.3e-47 193.7 201 68.2
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 3.0e-47 192.6 201 72.6
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 7.3e-46 188.0 201 60.7
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 7.3e-46 188.0 202 62.4
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 1.2e-45 187.2 184 59.8
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 5.2e-44 181.8 191 58.1
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 5.8e-43 178.3 196 66.3
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 1.6e-40 170.2 200 51.0
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 6.0e-40 168.3 190 54.2
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 6.6e-39 164.9 181 51.9
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 1.1e-38 164.1 186 51.6
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 1.5e-38 163.7 201 48.8
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 1.5e-38 163.7 188 52.1
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 1.9e-38 163.3 181 51.4
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 4.3e-38 162.2 168 52.4
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 5.6e-38 161.8 200 49.0
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 5.6e-38 161.8 201 48.8
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 1.6e-37 160.2 201 47.8
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 6.2e-37 158.3 168 51.2
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 8.1e-37 157.9 198 49.0
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 1.4e-36 157.1 165 53.9
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 1.4e-36 157.1 165 54.5
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 2.3e-36 156.4 174 51.7
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 2.3e-36 156.4 168 51.2
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 6.8e-36 154.8 181 50.8
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 2.0e-35 153.3 177 50.3
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 4.4e-35 152.1 160 55.6
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 1.3e-34 150.6 174 55.2
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 1.3e-34 150.6 168 51.2
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 2.2e-34 149.8 192 57.8
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 3.7e-34 149.1 182 50.5
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 4.9e-34 148.7 172 51.7
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 1.1e-33 147.5 183 61.2
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 2.4e-33 146.4 200 56.5
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 3.2e-33 146.0 201 52.7
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 4.1e-33 145.6 199 44.7
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 4.1e-33 145.6 180 51.1
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 7.1e-33 144.8 193 46.6
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 9.2e-33 144.4 201 45.3
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 9.2e-33 144.4 169 50.3
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 9.2e-33 144.4 193 45.6
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 1.2e-32 144.1 169 49.7
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 1.6e-32 143.7 201 45.8
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 2.7e-32 142.9 201 46.3
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 2.7e-32 142.9 201 46.3
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 3.5e-32 142.5 169 49.1
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 4.6e-32 142.1 201 46.3
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 4.6e-32 142.1 164 51.2
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 1.3e-31 140.6 191 55.5
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 1.7e-31 140.2 179 47.5
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 3.0e-31 139.4 190 57.9
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 6.6e-31 138.3 165 63.6
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 8.6e-31 137.9 180 60.6
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 1.1e-30 137.5 179 46.4
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 1.1e-30 137.5 179 46.4
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.1e-30 137.5 184 48.4
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 1.1e-30 137.5 215 43.3
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 1.9e-30 136.7 190 46.3
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 2.5e-30 136.3 177 48.6
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 3.3e-30 136.0 184 47.3
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 1.6e-29 133.7 184 47.3
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.6e-29 133.7 184 46.2
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 1.6e-29 133.7 199 50.3
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 2.8e-29 132.9 202 43.6
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 4.7e-29 132.1 168 47.0
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 4.7e-29 132.1 155 50.3
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 8.1e-29 131.3 178 44.4
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 1.1e-28 131.0 155 49.7
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 1.4e-28 130.6 201 48.8
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 1.4e-28 130.6 156 48.7
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 3.1e-28 129.4 179 49.7
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 3.1e-28 129.4 178 45.5
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 4.0e-28 129.0 163 49.1
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 6.8e-28 128.3 175 49.7
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 1.2e-27 127.5 169 48.5
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 1.5e-27 127.1 178 60.1
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 2.6e-27 126.3 173 46.8
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 3.4e-27 125.9 184 44.6
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 3.4e-27 125.9 184 44.6
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 7.6e-27 124.8 182 55.5
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 9.9e-27 124.4 203 46.3
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 1.3e-26 124.0 179 48.6
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 3.8e-26 122.5 203 50.2
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 4.9e-26 122.1 168 47.0
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 1.4e-25 120.6 196 41.3
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 2.4e-25 119.8 154 63.6
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 2.4e-25 119.8 154 63.6
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 2.4e-25 119.8 205 55.6
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 2.4e-25 119.8 188 50.5
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 3.2e-25 119.4 202 52.5
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 3.2e-25 119.4 190 56.3
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 4.2e-25 119.0 169 42.6
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 7.1e-25 118.2 156 51.9
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 3.5e-24 115.9 190 55.3
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 6.0e-24 115.2 218 39.0
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 1.0e-23 114.4 193 55.4
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 1.7e-23 113.6 176 39.2
DCAR_026627 Daucus carota HOM05D005061 ORTHO05D006001 2.3e-23 113.2 123 65.9
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 3.0e-23 112.8 208 38.5
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 3.9e-23 112.5 171 39.8
MELO3C006306.2 Cucumis melo HOM05D005061 ORTHO05D006001 2.5e-22 109.8 182 52.2
Oeu006186.1 Olea europaea HOM05D005061 ORTHO05D006001 2.5e-22 109.8 109 57.8
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 4.3e-22 109.0 185 38.9
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 2.1e-21 106.7 180 53.9
TWI34G0245 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 6.2e-21 105.1 180 47.8
Potri.001G317300 Populus trichocarpa HOM05D005061 ORTHO05D006001 1.8e-20 103.6 180 53.3
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 3.1e-20 102.8 185 42.2
CiPaw.01G118900 Carya illinoinensis HOM05D005061 ORTHO05D006001 7.6e-19 98.2 204 49.5
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 1.3e-18 97.4 172 47.7
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 2.2e-18 96.7 169 45.0
Lsat_1_v5_gn_6_60821 Lactuca sativa HOM05D005061 ORTHO05D006001 4.2e-17 92.4 162 54.3
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 9.3e-17 91.3 186 36.6
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 3.5e-16 89.4 176 49.4
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 6.0e-16 88.6 175 37.1
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 1.3e-15 87.4 145 41.4
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 3.3e-14 82.8 104 48.1
CsaV3_3G010880 Cucumis sativus L. HOM05D005061 ORTHO05D006001 5.6e-14 82.0 91 51.6
CSS0041532 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.6e-13 80.5 181 38.7
CSS0044809 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.6e-13 80.5 181 38.7
TWI34G1372 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 1.1e-12 77.8 180 41.7
ATR0745G004 Amborella trichopoda HOM05D005061 ORTHO05D006001 1.8e-12 77.0 156 50.6
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 2.4e-12 76.6 147 39.5
arahy.Tifrunner.gnm1.ann1.SQKG7P Arachis hypogaea HOM05D005061 ORTHO05D006001 1.2e-11 74.3 103 58.3
arahy.Tifrunner.gnm1.ann1.IKZ5YQ Arachis hypogaea HOM05D000225 ORTHO05D001595 4.5e-11 72.4 103 44.7
SEGI_31023 Sequoiadendron giganteum HOM05D005061 ORTHO05D006001 4.5e-11 72.4 150 30.0
FAN12G0303 Fragaria x ananassa HOM05D005061 ORTHO05D006001 7.6e-11 71.6 57 70.2
arahy.Tifrunner.gnm1.ann1.KB0HQZ Arachis hypogaea HOM05D005061 ORTHO05D006001 9.9e-11 71.2 103 63.1
Thhalv10009372m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 2.9e-10 69.7 68 51.5
arahy.Tifrunner.gnm1.ann1.J1UTGX Arachis hypogaea HOM05D005061 ORTHO05D016631 3.8e-10 69.3 103 68.9
Sc19g0007210 Simmondsia chinensis HOM05D005061 ORTHO05D006001 8.4e-10 68.2 62 59.7
arahy.Tifrunner.gnm1.ann1.16QZ2B Arachis hypogaea HOM05D001164 ORTHO05D026902 4.2e-09 65.9 96 49.0
arahy.Tifrunner.gnm1.ann1.L4TH9M Arachis hypogaea HOM05D005061 ORTHO05D006001 2.1e-08 63.5 121 55.4
arahy.Tifrunner.gnm1.ann1.W60CWR Arachis hypogaea HOM05D005061 ORTHO05D006001 3.5e-08 62.8 125 50.4
BolC9t53436H Brassica oleracea HOM05D005061 ORTHO05D006001 3.0e-07 59.7 53 62.3
Lj3P401T12 Lonicera japonica HOM05D005061 ORTHO05D006001 3.9e-07 59.3 42 61.9


User provided reference genes

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