Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g031940 Solanum pennellii HOM05D005842 ORTHO05D007077 4.2e-30 134.4 89 100.0
PGSC0003DMG400027164 Solanum tuberosum HOM05D005842 ORTHO05D007077 4.0e-28 127.9 89 75.3
Solyc05g053450.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 1.5e-27 125.9 89 93.3
Nitab4.5_0001769g0190 Nicotiana tabacum HOM05D005842 ORTHO05D007077 9.1e-25 116.7 88 65.9
CAN.G305.25 Capsicum annuum HOM05D005842 ORTHO05D007077 5.0e-23 110.9 90 65.6
Migut.N00324 Erythranthe guttata HOM05D005842 ORTHO05D007077 3.7e-18 94.7 87 54.0
Actinidia39941 Actinidia chinensis HOM05D005842 ORTHO05D007077 1.8e-17 92.4 87 56.3
Nitab4.5_0000867g0010 Nicotiana tabacum HOM05D000404 ORTHO05D001765 2.4e-17 92.0 89 74.2
Dinv27137 Davidia involucrata HOM05D005842 ORTHO05D007077 7.0e-17 90.5 89 52.8
Peaxi162Scf00164g00112 Petunia axillaris HOM05D005842 ORTHO05D007077 9.1e-17 90.1 73 60.3
Migut.H00813 Erythranthe guttata HOM05D005842 ORTHO05D007077 2.0e-16 89.0 87 49.4
Sopen09g034020 Solanum pennellii HOM05D005842 ORTHO05D007077 2.0e-16 89.0 90 56.7
Hma1.2p1_0112F.1_g055010 Hydrangea macrophylla HOM05D005842 ORTHO05D007077 4.5e-16 87.8 89 51.7
Actinidia11383 Actinidia chinensis HOM05D005842 ORTHO05D007077 5.9e-16 87.4 87 54.0
Actinidia25095 Actinidia chinensis HOM05D005842 ORTHO05D007077 5.9e-16 87.4 87 51.7
CSS0017402 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 2.9e-15 85.1 88 50.0
Cc03_g06880 Coffea canephora HOM05D005842 ORTHO05D007077 3.8e-15 84.7 84 54.8
Cc03_g06890 Coffea canephora HOM05D005842 ORTHO05D007077 3.8e-15 84.7 84 54.8
Cc03_g06900 Coffea canephora HOM05D005842 ORTHO05D007077 3.8e-15 84.7 84 54.8
Cc03_g06910 Coffea canephora HOM05D005842 ORTHO05D007077 3.8e-15 84.7 84 54.8
Cc03_g06920 Coffea canephora HOM05D005842 ORTHO05D007077 3.8e-15 84.7 84 54.8
Cc03_g06930 Coffea canephora HOM05D005842 ORTHO05D007077 3.8e-15 84.7 84 54.8
Cc03_g06940 Coffea canephora HOM05D005842 ORTHO05D007077 3.8e-15 84.7 84 54.8
Cc03_g06950 Coffea canephora HOM05D005842 ORTHO05D007077 3.8e-15 84.7 84 54.8
Solyc09g091040.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 8.6e-15 83.6 90 53.3
PGSC0003DMG404001548 Solanum tuberosum HOM05D005842 ORTHO05D007077 8.6e-15 83.6 90 55.6
Peaxi162Scf01007g00004 Petunia axillaris HOM05D005842 ORTHO05D007077 2.5e-14 82.0 87 71.3
CSS0006411 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 3.3e-14 81.6 87 50.6
SalBow2G2733 Salvia bowleyana HOM05D005842 ORTHO05D007077 7.2e-14 80.5 89 69.7
Cc00_g17210 Coffea canephora HOM05D005842 ORTHO05D007077 9.5e-14 80.1 84 54.8
Peaxi162Scf00125g01021 Petunia axillaris HOM05D005842 ORTHO05D007077 1.6e-13 79.3 89 74.2
Dinv29780 Davidia involucrata HOM05D005842 ORTHO05D007077 2.3e-12 75.5 96 47.9
Atru.chr4.1869 Acer truncatum HOM05D005842 ORTHO05D007077 4.0e-12 74.7 88 58.0
Atru.chr4.1859_Atru.chr4.1858 Acer truncatum HOM05D005842 ORTHO05D007077 6.8e-12 73.9 88 58.0
Atru.chr4.1868 Acer truncatum HOM05D005842 ORTHO05D007077 6.8e-12 73.9 88 58.0
Dinv29781 Davidia involucrata HOM05D005842 ORTHO05D007077 1.5e-11 72.8 103 44.7
SHI18628 Sapria himalayana HOM05D005842 ORTHO05D007077 2.0e-11 72.4 89 42.7
PSO832G1240 Papaver somniferum HOM05D005842 ORTHO05D007077 2.6e-11 72.0 83 43.4
PSO210G3477 Papaver somniferum HOM05D005842 ORTHO05D007077 3.4e-11 71.6 83 65.1
PSO210G4408 Papaver somniferum HOM05D005842 ORTHO05D007077 3.4e-11 71.6 83 65.1
Ca_26210_v3 Cicer arietinum L. HOM05D005842 ORTHO05D007077 7.5e-11 70.5 91 44.0
MD13G1226500 Malus domestica HOM05D005842 ORTHO05D007077 7.5e-11 70.5 89 42.7
MD16G1231600 Malus domestica HOM05D005842 ORTHO05D007077 7.5e-11 70.5 89 42.7
Glyma.10G130600 Glycine max HOM05D005842 ORTHO05D007077 1.7e-10 69.3 85 45.9
PSO764G0017 Papaver somniferum HOM05D005842 ORTHO05D007077 1.7e-10 69.3 83 63.9
Glyma.20G081400 Glycine max HOM05D005842 ORTHO05D007077 2.8e-10 68.6 85 45.9
Sed0010218 Sechium edule HOM05D005842 ORTHO05D007077 2.8e-10 68.6 80 62.5
TAR633G2520 Trochodendron aralioides HOM05D005842 ORTHO05D007077 2.8e-10 68.6 83 43.4
ClCG05G003830 Citrullus lanatus HOM05D005842 ORTHO05D007077 4.9e-10 67.8 73 45.2
Sabra10G0043900 Salix brachista HOM05D005842 ORTHO05D007077 4.9e-10 67.8 85 43.5
PSO384G4311 Papaver somniferum HOM05D005842 ORTHO05D007077 6.3e-10 67.4 83 62.7
TWI09G0179 Tripterygium wilfordii HOM05D005842 ORTHO05D007077 6.3e-10 67.4 86 43.0
Lj6g0013781 Lotus japonicus HOM05D005842 ORTHO05D007077 8.3e-10 67.0 85 43.5
PSO384G5008 Papaver somniferum HOM05D005842 ORTHO05D007077 1.1e-09 66.6 83 63.9
Prupe.1G053900 Prunus persica HOM05D005842 ORTHO05D007077 1.1e-09 66.6 89 39.3
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 1.1e-09 66.6 85 42.4
Potri.010G062800 Populus trichocarpa HOM05D005842 ORTHO05D007077 1.4e-09 66.2 92 42.4
PSO266G0009 Papaver somniferum HOM05D005842 ORTHO05D007077 2.4e-09 65.5 83 62.7
PSO266G0028 Papaver somniferum HOM05D005842 ORTHO05D007077 2.4e-09 65.5 83 62.7
Oeu007544.1 Olea europaea HOM05D005842 ORTHO05D007077 3.1e-09 65.1 65 49.2
Nn1g03042 Nelumbo nucifera HOM05D005842 ORTHO05D007077 1.6e-08 62.8 83 56.6
ATR0787G056 Amborella trichopoda HOM05D005842 ORTHO05D007077 4.5e-08 61.2 86 54.7
Nn1g03041 Nelumbo nucifera HOM05D005842 ORTHO05D007077 4.5e-08 61.2 83 48.2
Nn1g03039 Nelumbo nucifera HOM05D005842 ORTHO05D007077 5.9e-08 60.8 82 54.9
THA.LOC104821628 Tarenaya hassleriana HOM05D005842 ORTHO05D007077 5.9e-08 60.8 89 40.4
A07p08140 Brassica napus HOM05D005842 ORTHO05D007077 1.0e-07 60.1 91 59.3
C07p12280 Brassica napus HOM05D005842 ORTHO05D007077 1.0e-07 60.1 91 59.3
BolC7t41695H Brassica oleracea HOM05D005842 ORTHO05D007077 1.0e-07 60.1 91 59.3
BraA07t28597Z Brassica rapa HOM05D005842 ORTHO05D007077 1.0e-07 60.1 91 59.3
MBI10_g16785_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 1.0e-07 60.1 89 53.9
MBI10_g16786_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 1.0e-07 60.1 89 53.9
Nn1g03040 Nelumbo nucifera HOM05D005842 ORTHO05D007077 1.3e-07 59.7 83 39.8
Rhsim09G0044300 Rhododendron simsii HOM05D005842 ORTHO05D007077 1.3e-07 59.7 91 57.1
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 2.9e-07 58.5 74 54.1
PGR142G0529 Punica granatum HOM05D005842 ORTHO05D007077 3.9e-07 58.2 35 74.3
arahy.Tifrunner.gnm1.ann1.LRUD7W Arachis hypogaea HOM05D005842 ORTHO05D007077 5.0e-07 57.8 85 44.7
arahy.Tifrunner.gnm1.ann1.Q9KDDQ Arachis hypogaea HOM05D005842 ORTHO05D007077 5.0e-07 57.8 85 44.7
Lalb_Chr01g0011321 Lupinus albus HOM05D005842 ORTHO05D007077 5.0e-07 57.8 83 43.4
BcaB06g26603 Brassica carinata HOM05D005842 ORTHO05D007077 6.6e-07 57.4 74 52.7
Sopen12g032850 Solanum pennellii HOM05D005842 ORTHO05D007077 6.6e-07 57.4 91 38.5
Solyc12g097050.2 Solanum lycopersicum HOM05D005842 ORTHO05D007077 8.6e-07 57.0 91 38.5
Atru.chr13.2235 Acer truncatum HOM05D005842 ORTHO05D007077 1.5e-06 56.2 37 67.6
arahy.Tifrunner.gnm1.ann1.GMD4I9 Arachis hypogaea HOM05D005842 ORTHO05D007077 1.9e-06 55.8 85 43.5
Phvul.007G233000 Phaseolus vulgaris HOM05D005842 ORTHO05D007077 1.9e-06 55.8 85 41.2
arahy.Tifrunner.gnm1.ann1.JU0LD9 Arachis hypogaea HOM05D005842 ORTHO05D007077 3.3e-06 55.1 85 43.5
BcaB03g16079 Brassica carinata HOM05D005842 ORTHO05D007077 5.6e-06 54.3 109 45.0
BcaC02g09413 Brassica carinata HOM05D005842 ORTHO05D007077 5.6e-06 54.3 109 45.0
BcaC02g09414 Brassica carinata HOM05D005842 ORTHO05D007077 5.6e-06 54.3 109 45.0
BcaC02g09415 Brassica carinata HOM05D005842 ORTHO05D007077 5.6e-06 54.3 109 45.0
Cfa014832 Carpinus fangiana HOM05D005842 ORTHO05D007077 5.6e-06 54.3 38 63.2
CsaV3_2G012270 Cucumis sativus L. HOM05D005842 ORTHO05D007077 5.6e-06 54.3 96 34.4
SpUn0225_0010 Schrenkiella parvula HOM05D005842 ORTHO05D007077 5.6e-06 54.3 109 45.0
PGSC0003DMG400008623 Solanum tuberosum HOM05D005842 ORTHO05D007077 5.6e-06 54.3 91 37.4
TAR362G0228 Trochodendron aralioides HOM05D005842 ORTHO05D007077 7.3e-06 53.9 83 37.3


User provided reference genes

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