Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g031760 Solanum pennellii HOM05D005893 ORTHO05D007295 1.7e-111 406.0 204 100.0
PGSC0003DMG400027152 Solanum tuberosum HOM05D005893 ORTHO05D007295 3.5e-104 381.7 204 93.1
Solyc05g053250.4 Solanum lycopersicum HOM05D005893 ORTHO05D007295 5.2e-92 341.3 171 98.8
CAN.G305.42 Capsicum annuum HOM05D005893 ORTHO05D007295 2.6e-83 312.4 197 80.7
Nitab4.5_0002194g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 1.9e-73 279.6 197 73.6
Nitab4.5_0007148g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 2.4e-73 279.3 195 73.8
Peaxi162Scf00431g00001 Petunia axillaris HOM05D005893 ORTHO05D007295 6.4e-66 254.6 171 74.3
Dinv31297 Davidia involucrata HOM05D005893 ORTHO05D007295 2.6e-51 206.1 194 56.7
DCAR_019095 Daucus carota HOM05D005893 ORTHO05D007295 2.9e-50 202.6 189 56.6
Dinv31211 Davidia involucrata HOM05D005893 ORTHO05D007295 6.0e-48 194.9 182 55.5
Glyma.10G209400 Glycine max HOM05D005893 ORTHO05D007295 1.1e-46 190.7 192 54.2
Glyma.20G181200 Glycine max HOM05D005893 ORTHO05D007295 1.5e-46 190.3 193 53.9
Nn2g11535 Nelumbo nucifera HOM05D005893 ORTHO05D007295 1.9e-46 189.9 196 53.1
COL.COLO4_38473 Corchorus olitorius HOM05D005893 ORTHO05D007295 7.4e-46 188.0 190 57.4
TAR633G2388 Trochodendron aralioides HOM05D005893 ORTHO05D007295 7.4e-46 188.0 198 53.5
Potri.008G037300 Populus trichocarpa HOM05D005893 ORTHO05D007295 1.6e-45 186.8 164 60.4
Hma1.2p1_1458F.1_g284765 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 4.8e-45 185.3 158 62.0
Phvul.007G096700 Phaseolus vulgaris HOM05D005893 ORTHO05D007295 4.8e-45 185.3 196 52.0
Thecc.10G078600 Theobroma cacao HOM05D005893 ORTHO05D002604 4.8e-45 185.3 188 57.4
Cc02_g11140 Coffea canephora HOM05D005893 ORTHO05D007295 6.3e-45 184.9 191 49.7
QL08p055159 Quercus lobata HOM05D005893 ORTHO05D007295 1.4e-44 183.7 200 53.0
Sabra08G0025100 Salix brachista HOM05D005893 ORTHO05D007295 1.4e-44 183.7 164 58.5
Duzib106G0129 Durio zibethinus HOM05D005893 ORTHO05D007295 1.8e-44 183.3 184 57.6
Migut.F01727 Erythranthe guttata HOM05D005893 ORTHO05D007295 2.4e-44 183.0 194 55.7
Lj2C17T1 Lonicera japonica HOM05D005893 ORTHO05D007295 3.1e-44 182.6 161 60.2
CiPaw.01G270700 Carya illinoinensis HOM05D005893 ORTHO05D007295 4.1e-44 182.2 200 53.5
MBI05_g31459_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 5.3e-44 181.8 145 58.6
Oeu021200.1 Olea europaea HOM05D005893 ORTHO05D007295 9.0e-44 181.0 106 79.2
PGR142G3224 Punica granatum HOM05D005893 ORTHO05D007295 9.0e-44 181.0 198 51.5
Actinidia06754 Actinidia chinensis HOM05D005893 ORTHO05D007295 1.2e-43 180.6 197 51.3
Cfa001666 Carpinus fangiana HOM05D005893 ORTHO05D007295 1.2e-43 180.6 194 54.1
SalBow6G7151 Salvia bowleyana HOM05D005893 ORTHO05D007295 1.5e-43 180.3 191 51.3
MSTRG.382 Avicennia marina HOM05D005893 ORTHO05D007295 2.0e-43 179.9 194 52.6
Sed0005810 Sechium edule HOM05D005893 ORTHO05D007295 2.0e-43 179.9 164 57.3
Gohir.A05G295100 Gossypium hirsutum HOM05D005893 ORTHO05D007295 2.6e-43 179.5 163 58.9
Gorai.009G312400 Gossypium raimondii HOM05D005893 ORTHO05D007295 3.4e-43 179.1 186 53.8
Manes.07G096800 Manihot esculenta HOM05D005893 ORTHO05D007295 3.4e-43 179.1 198 54.5
ClCG05G021120 Citrullus lanatus HOM05D005893 ORTHO05D007295 7.6e-43 177.9 156 62.2
Gohir.D05G295800 Gossypium hirsutum HOM05D005893 ORTHO05D007295 2.2e-42 176.4 186 52.2
TWI15G0972 Tripterygium wilfordii HOM05D005893 ORTHO05D007295 2.2e-42 176.4 195 54.9
Cpa.g.sc53.97 Carica papaya HOM05D005893 ORTHO05D007295 2.9e-42 176.0 197 49.7
CANSAT56G0338 Cannabis sativa HOM05D005893 ORTHO05D007295 3.8e-42 175.6 150 60.0
Ciclev10030991m.g Citrus clementina HOM05D003292 ORTHO05D004237 6.5e-42 174.9 168 58.3
Ca_10554_v3 Cicer arietinum L. HOM05D005893 ORTHO05D007295 8.5e-42 174.5 192 50.0
MELO3C012415.2 Cucumis melo HOM05D005893 ORTHO05D007295 1.1e-41 174.1 101 80.2
THA.LOC104825224 Tarenaya hassleriana HOM05D005893 ORTHO05D007295 1.1e-41 174.1 151 60.3
Lalb_Chr02g0152261 Lupinus albus HOM05D005893 ORTHO05D007295 1.4e-41 173.7 107 72.0
CsaV3_5G036140 Cucumis sativus L. HOM05D005893 ORTHO05D007295 1.9e-41 173.3 128 67.2
Sed0025931 Sechium edule HOM05D005893 ORTHO05D007295 1.9e-41 173.3 106 75.5
Atru.chr12.817 Acer truncatum HOM05D005893 ORTHO05D007295 3.2e-41 172.6 169 54.4
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 4.2e-41 172.2 161 54.7
Haze_16866 Corylus avellana HOM05D005893 ORTHO05D007295 4.2e-41 172.2 169 56.8
VMungo0720G1965 Vigna mungo HOM05D005893 ORTHO05D007295 5.5e-41 171.8 144 61.1
Psat6g182280 Pisum sativum HOM05D005893 ORTHO05D007295 2.1e-40 169.9 172 51.7
CARHR164770 Cardamine hirsuta HOM05D005893 ORTHO05D007295 3.6e-40 169.1 192 51.0
HPP92_025345 Vanilla planifolia HOM05D005893 ORTHO05D007295 3.6e-40 169.1 188 50.5
Lj5g0004254 Lotus japonicus HOM05D005893 ORTHO05D007295 4.6e-40 168.7 188 50.0
Lj5g0008044 Lotus japonicus HOM05D005893 ORTHO05D007295 4.6e-40 168.7 188 50.0
Lj5g0026776 Lotus japonicus HOM05D005893 ORTHO05D007295 4.6e-40 168.7 188 50.0
Sc20g0001660 Simmondsia chinensis HOM05D005893 ORTHO05D007295 4.6e-40 168.7 102 77.5
unitig_46.g18354 Utricularia gibba HOM05D005893 ORTHO05D007295 4.6e-40 168.7 191 48.7
Hund09872 Selenicereus undatus HOM05D005893 ORTHO05D007295 6.1e-40 168.3 200 49.0
TPR.G1908 Trifolium pratense HOM05D005893 ORTHO05D007295 6.1e-40 168.3 114 69.3
Os02g0819700 Oryza sativa ssp. japonica HOM05D005893 ORTHO05D007295 7.9e-40 167.9 144 60.4
Eucgr.G02856 Eucalyptus grandis HOM05D005893 ORTHO05D007295 1.3e-39 167.2 192 52.1
SGA_v2.0_scaffold2G01368 Striga asiatica HOM05D005893 ORTHO05D007295 1.3e-39 167.2 158 57.0
Carub.0005s2142 Capsella rubella HOM05D005893 ORTHO05D007295 3.9e-39 165.6 194 49.0
RcHm_v2.0_Chr1g0362931 Rosa chinensis HOM05D005893 ORTHO05D007295 6.7e-39 164.9 196 51.0
PSO339G3974 Papaver somniferum HOM05D005893 ORTHO05D007295 8.7e-39 164.5 189 50.3
Aqoxy1G01187 Aquilegia oxysepala HOM05D005893 ORTHO05D007295 1.1e-38 164.1 120 63.3
SalBow7G0798 Salvia bowleyana HOM05D005893 ORTHO05D007295 2.5e-38 162.9 103 71.8
AUR62014260 Chenopodium quinoa HOM05D005893 ORTHO05D007295 7.4e-38 161.4 135 58.5
AT3G54826 Arabidopsis thaliana HOM05D005893 ORTHO05D007295 9.7e-38 161.0 194 48.5
Cfa014465 Carpinus fangiana HOM05D005893 ORTHO05D007295 9.7e-38 161.0 97 78.4
MD07G1171800 Malus domestica HOM05D005893 ORTHO05D007295 1.3e-37 160.6 194 49.0
MD01G1105600 Malus domestica HOM05D005893 ORTHO05D007295 2.2e-37 159.8 188 52.1
GSVIVG01016242001 Vitis vinifera HOM05D003292 ORTHO05D004237 3.7e-37 159.1 173 55.5
Sp5g07600 Schrenkiella parvula HOM05D005893 ORTHO05D007295 4.8e-37 158.7 192 47.9
ATR0680G313 Amborella trichopoda HOM05D005893 ORTHO05D007295 8.2e-37 157.9 102 69.6
AL5G35910 Arabidopsis lyrata HOM05D005893 ORTHO05D007295 8.2e-37 157.9 194 47.4
EL10Ac6g14183 Beta vulgaris HOM05D005893 ORTHO05D007295 8.2e-37 157.9 132 61.4
Thhalv10010741m.g Eutrema salsugineum HOM05D005893 ORTHO05D007295 1.1e-36 157.5 191 48.2
unitig_37.g12607 Utricularia gibba HOM05D000329 ORTHO05D002132 2.4e-36 156.4 102 69.6
EL10Ac6g14385 Beta vulgaris HOM05D005893 ORTHO05D007295 3.1e-36 156.0 132 60.6
BolC8t50606H Brassica oleracea HOM05D005893 ORTHO05D007295 3.1e-36 156.0 142 54.9
Hma1.2p1_1458F.1_g284770 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 3.1e-36 156.0 83 85.5
Lsat_1_v5_gn_8_20480 Lactuca sativa HOM05D005893 ORTHO05D007295 3.1e-36 156.0 195 47.2
BcaC07g39781 Brassica carinata HOM05D005893 ORTHO05D007295 4.1e-36 155.6 148 54.1
C08p29970 Brassica napus HOM05D005893 ORTHO05D007295 4.1e-36 155.6 148 54.1
A09p47740 Brassica napus HOM05D005893 ORTHO05D007295 5.3e-36 155.2 142 54.2
BcaC08g44701 Brassica carinata HOM05D005893 ORTHO05D007295 6.9e-36 154.8 133 57.9
C06p22370 Brassica napus HOM05D005893 ORTHO05D007295 6.9e-36 154.8 133 57.9
BraA09t40232Z Brassica rapa HOM05D005893 ORTHO05D007295 6.9e-36 154.8 142 54.2
Zm00001eb259110 Zea mays HOM05D005893 ORTHO05D007295 6.9e-36 154.8 140 55.0
Ah.01g004770 Amaranthus hybridus HOM05D005893 ORTHO05D007295 9.0e-36 154.5 169 48.5
BcaB02g07716 Brassica carinata HOM05D005893 ORTHO05D007295 9.0e-36 154.5 194 44.8
Aa31sc66G40 Aethionema arabicum HOM05D005893 ORTHO05D007295 1.2e-35 154.1 151 53.0
BraA07t29907Z Brassica rapa HOM05D005893 ORTHO05D007295 1.2e-35 154.1 138 57.2
BcaB01g00158 Brassica carinata HOM05D005893 ORTHO05D007295 1.5e-35 153.7 141 53.9
A07p22290 Brassica napus HOM05D005893 ORTHO05D007295 1.5e-35 153.7 134 57.5
AUR62038482 Chenopodium quinoa HOM05D005893 ORTHO05D007295 1.5e-35 153.7 96 74.0
FvH4_7g19000 Fragaria vesca HOM05D005893 ORTHO05D007295 1.0e-34 151.0 107 69.2
FAN06G1961 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.0e-34 151.0 107 69.2
FAN06G4511 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.0e-34 151.0 107 69.2
Medtr1g094720 Medicago truncatula HOM05D005893 ORTHO05D007295 1.0e-34 151.0 197 45.2
FAN10G0987 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.7e-34 150.2 121 63.6
FAN03G3224 Fragaria x ananassa HOM05D005893 ORTHO05D007295 2.2e-34 149.8 121 62.8
FAN01G0197 Fragaria x ananassa HOM05D005893 ORTHO05D007295 5.0e-34 148.7 121 62.8
HanXRQChr08g0218681 Helianthus annuus HOM05D005893 ORTHO05D007295 6.5e-34 148.3 192 44.3
SEGI_03670 Sequoiadendron giganteum HOM05D005893 ORTHO05D007295 1.1e-33 147.5 121 59.5
vmacro07131 Vaccinium macrocarpon HOM05D000972 ORTHO05D001783 7.2e-33 144.8 163 47.9
ECA233G2346 Erigeron canadensis HOM05D005893 ORTHO05D007295 1.6e-32 143.7 189 45.0
Mapoly0143s0034 Marchantia polymorpha HOM05D005893 ORTHO05D007295 2.2e-29 133.3 118 54.2
AagrBONN_evm.TU.Sc2ySwM_228.2692 Anthoceros agrestis HOM05D005893 ORTHO05D007295 6.3e-29 131.7 91 62.6
CBR_g38445 Chara braunii HOM05D005893 ORTHO05D007295 1.8e-28 130.2 91 61.5
CDE01G0774 Ceratophyllum demersum HOM05D005893 ORTHO05D007295 5.3e-28 128.6 76 72.4
Pp3c10_20870 Physcomitrium patens HOM05D005893 ORTHO05D007295 2.0e-27 126.7 89 61.8
FAN06G0522 Fragaria x ananassa HOM05D003292 ORTHO05D004237 1.1e-25 120.9 96 60.4
Peaxi162Scf00066g01616 Petunia axillaris HOM05D005893 ORTHO05D007295 1.0e-23 114.4 94 61.7
SGA_v2.0_scaffold223G42811 Striga asiatica HOM05D005893 ORTHO05D007295 1.0e-23 114.4 99 54.5
MBI05_g14981_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 2.6e-22 109.8 131 48.9
SMO364G0951 Selaginella moellendorffii HOM05D005893 ORTHO05D007295 8.2e-21 104.8 75 61.3
MBI05_g31456_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 4.1e-20 102.4 95 54.7
MCO14G392 Micromonas commoda HOM05D005893 ORTHO05D007295 5.3e-20 102.1 150 42.0
SGA_v2.0_scaffold51G18702 Striga asiatica HOM05D005893 ORTHO05D007295 9.1e-20 101.3 90 51.1
MBI08_g29407_MAGBIO Magnolia biondii HOM05D002127 ORTHO05D007295 1.9e-17 93.6 102 45.1
MBI05_g14980_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 4.2e-17 92.4 131 45.8
SGA_v2.0_scaffold211G42109 Striga asiatica HOM05D005893 ORTHO05D007295 5.5e-17 92.0 68 58.8
MBI04_g06289_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.4e-15 87.4 119 39.5
Cre07.g334851 Chlamydomonas reinhardtii HOM05D005893 ORTHO05D007295 3.7e-13 79.3 72 47.2
MBI19_g05599_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 4.8e-13 79.0 92 43.5
PRCOL_00001193 Prasinoderma coloniale HOM05D001599 ORTHO05D003184 1.2e-11 74.3 112 37.5
MBI05_g31458_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 3.5e-11 72.8 147 34.7
Cfa025074 Carpinus fangiana HOM05D005893 ORTHO05D007295 5.0e-10 68.9 85 40.0
Mapoly0032s0026 Marchantia polymorpha HOM05D005893 ORTHO05D007295 2.5e-09 66.6 110 36.4
Rhsim05G0120600 Rhododendron simsii HOM05D005893 ORTHO05D007295 9.4e-09 64.7 42 71.4
MD13G1049900 Malus domestica HOM05D002826 ORTHO05D003105 2.6e-06 56.6 61 41.0
ClCG05G023210 Citrullus lanatus HOM05D002826 ORTHO05D003105 3.4e-06 56.2 50 44.0
unitig_27.g25229 Utricularia gibba HOM05D002826 ORTHO05D003105 3.4e-06 56.2 60 40.0
MD16G1050900 Malus domestica HOM05D002826 ORTHO05D003105 4.4e-06 55.8 60 41.7
Gohir.D12G175900 Gossypium hirsutum HOM05D002826 ORTHO05D003105 5.7e-06 55.5 98 33.7
Gorai.008G188300 Gossypium raimondii HOM05D002826 ORTHO05D003105 5.7e-06 55.5 98 33.7
MELO3C012198.2 Cucumis melo HOM05D002826 ORTHO05D003105 7.5e-06 55.1 50 44.0
CsaV3_5G033810 Cucumis sativus L. HOM05D002826 ORTHO05D003105 7.5e-06 55.1 50 44.0
FvH4_4g28420 Fragaria vesca HOM05D002826 ORTHO05D003105 7.5e-06 55.1 50 46.0
FAN07G1210 Fragaria x ananassa HOM05D002826 ORTHO05D003105 7.5e-06 55.1 50 46.0
FAN12G4176 Fragaria x ananassa HOM05D002826 ORTHO05D003105 7.5e-06 55.1 50 46.0
FAN22G0168 Fragaria x ananassa HOM05D002826 ORTHO05D003105 7.5e-06 55.1 50 46.0
RcHm_v2.0_Chr4g0436371 Rosa chinensis HOM05D002826 ORTHO05D003105 7.5e-06 55.1 50 46.0
SGA_v2.0_scaffold59G20634 Striga asiatica HOM05D002826 ORTHO05D003105 7.5e-06 55.1 54 38.9


User provided reference genes

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