Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 1.0e-105 386.7 194 100.0
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 1.0e-105 386.7 194 100.0
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 5.7e-104 380.9 194 98.5
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 6.5e-100 367.5 194 93.3
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 6.3e-79 297.7 197 76.6
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 8.2e-79 297.4 197 74.1
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 5.3e-78 294.7 198 73.7
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 7.0e-78 294.3 198 73.2
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 1.3e-76 290.0 198 72.7
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 2.2e-76 289.3 198 72.2
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 2.9e-76 288.9 194 72.7
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 3.8e-76 288.5 200 72.5
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 1.5e-75 286.6 195 74.4
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 9.4e-75 283.9 197 73.1
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 2.7e-74 282.3 197 71.6
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 3.6e-74 282.0 195 79.0
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 4.7e-74 281.6 197 71.6
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 3.0e-73 278.9 199 70.4
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 6.7e-73 277.7 197 71.6
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 2.0e-72 276.2 209 68.4
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 5.7e-72 274.6 197 69.5
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 2.8e-71 272.3 200 70.5
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 2.8e-71 272.3 201 69.7
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 4.8e-71 271.6 194 74.2
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 4.8e-71 271.6 200 72.5
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 1.1e-70 270.4 196 69.4
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 1.1e-70 270.4 205 68.3
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 1.8e-70 269.6 200 69.0
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.4e-70 269.2 201 69.2
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 2.4e-70 269.2 205 67.8
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 3.1e-70 268.9 200 68.5
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 9.1e-70 267.3 199 68.8
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 9.1e-70 267.3 198 67.2
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 1.6e-69 266.5 192 70.3
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 2.0e-69 266.2 198 68.2
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 5.9e-69 264.6 207 64.7
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 7.7e-69 264.2 205 66.8
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 1.3e-68 263.5 192 69.8
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 1.7e-68 263.1 196 68.9
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 3.8e-68 261.9 197 68.0
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 5.0e-68 261.5 178 70.2
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 6.5e-68 261.2 199 66.8
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 1.1e-67 260.4 200 68.0
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 1.5e-67 260.0 197 65.5
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 4.2e-67 258.5 191 69.6
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 5.5e-67 258.1 198 64.1
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 7.2e-67 257.7 197 67.0
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.6e-66 256.5 196 67.9
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 2.1e-66 256.1 200 65.5
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 3.6e-66 255.4 198 62.1
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 8.0e-66 254.2 197 64.5
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 8.0e-66 254.2 212 63.7
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 1.8e-65 253.1 197 68.0
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 2.3e-65 252.7 197 64.0
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 4.0e-65 251.9 199 65.3
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 5.2e-65 251.5 189 67.7
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 5.2e-65 251.5 192 65.6
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 6.8e-65 251.1 198 68.2
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 8.8e-65 250.8 198 61.6
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 1.2e-64 250.4 197 64.5
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 1.5e-64 250.0 191 65.4
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 1.5e-64 250.0 198 62.1
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 2.6e-64 249.2 195 65.6
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 2.6e-64 249.2 190 65.3
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 2.6e-64 249.2 198 62.1
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 3.4e-64 248.8 194 66.5
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 3.4e-64 248.8 212 63.2
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 4.4e-64 248.4 183 66.7
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 1.3e-63 246.9 197 64.5
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 1.7e-63 246.5 195 70.3
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 2.2e-63 246.1 198 64.1
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 2.2e-63 246.1 198 63.1
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 2.8e-63 245.7 217 61.3
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 2.8e-63 245.7 198 64.6
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 3.7e-63 245.4 192 63.5
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 4.8e-63 245.0 199 63.8
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 6.3e-63 244.6 206 63.6
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 6.3e-63 244.6 195 65.1
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 8.3e-63 244.2 211 63.0
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 1.1e-62 243.8 197 64.5
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 1.1e-62 243.8 195 65.1
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 1.4e-62 243.4 192 66.1
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 3.1e-62 242.3 198 65.2
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 5.4e-62 241.5 206 63.1
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 3.5e-61 238.8 197 63.5
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 4.5e-61 238.4 206 62.1
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 5.9e-61 238.0 170 71.8
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 7.7e-61 237.7 199 63.8
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 1.0e-60 237.3 195 63.1
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 1.7e-60 236.5 199 63.3
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 1.7e-60 236.5 191 63.4
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 1.7e-60 236.5 187 64.7
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 1.7e-60 236.5 199 60.8
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 6.5e-60 234.6 260 52.3
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 6.5e-60 234.6 195 62.6
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 4.2e-59 231.9 157 74.5
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 9.4e-59 230.7 301 47.8
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 1.2e-58 230.3 197 60.4
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 1.6e-58 229.9 197 60.9
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 2.7e-58 229.2 199 60.8
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 6.1e-58 228.0 197 61.4
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 6.1e-58 228.0 197 61.4
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 6.1e-58 228.0 195 60.0
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 1.0e-57 227.3 197 61.4
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 3.0e-57 225.7 197 60.9
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 6.8e-57 224.6 195 63.6
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 6.8e-57 224.6 190 62.1
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 2.6e-56 222.6 192 59.9
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 2.6e-56 222.6 190 61.6
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 4.4e-56 221.9 199 60.8
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 7.5e-56 221.1 161 66.5
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 1.3e-55 220.3 196 59.7
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 2.8e-55 219.2 191 62.8
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 1.1e-51 207.2 200 56.0
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 5.6e-51 204.9 198 56.6
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 2.1e-50 203.0 192 57.8
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 4.7e-50 201.8 181 58.0
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 5.7e-48 194.9 197 56.3
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 8.3e-47 191.0 199 54.3
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 5.4e-46 188.3 200 52.5
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 1.7e-44 183.3 157 59.2
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 8.0e-42 174.5 169 55.0
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 1.0e-41 174.1 125 63.2
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 3.1e-41 172.6 135 63.7
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 3.1e-41 172.6 135 63.7
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 3.4e-40 169.1 177 49.7
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 6.4e-39 164.9 159 54.7
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 4.1e-38 162.2 167 52.1
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 5.4e-38 161.8 189 51.9
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 1.2e-32 144.1 173 42.8
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 8.3e-31 137.9 123 56.1
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 6.0e-29 131.7 100 65.0
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.0e-28 131.0 101 62.4
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.3e-28 130.6 100 63.0
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 5.1e-28 128.6 98 64.3
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 7.3e-27 124.8 101 57.4
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 1.2e-26 124.0 99 65.7
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 1.6e-26 123.6 122 49.2
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 5.8e-24 115.2 154 41.6
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 2.9e-23 112.8 126 46.0
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 1.9e-22 110.2 115 51.3
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 1.9e-22 110.2 115 51.3
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 1.9e-22 110.2 117 53.8
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 4.1e-22 109.0 136 48.5
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 4.1e-22 109.0 155 43.2
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 6.0e-21 105.1 104 59.6
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 3.6e-18 95.9 113 45.1
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 4.0e-17 92.4 91 53.8
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 1.4e-14 84.0 175 36.6
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 1.4e-14 84.0 65 64.6
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 9.3e-14 81.3 55 74.5
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 2.3e-12 76.6 65 61.5
EL10Ac1g01076 Beta vulgaris HOM05D004696 ORTHO05D005645 1.5e-11 73.9 57 68.4
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 5.6e-11 72.0 101 41.6
QL04p080373 Quercus lobata HOM05D000023 ORTHO05D000014 1.1e-09 67.8 45 68.9
BcaB05g22696 Brassica carinata HOM05D004696 ORTHO05D005645 4.9e-07 58.9 47 59.6
QL12p004065 Quercus lobata HOM05D004696 ORTHO05D005645 6.4e-07 58.5 66 53.0
Medtr7g074130 Medicago truncatula HOM05D004696 ORTHO05D005645 1.9e-06 57.0 62 50.0


User provided reference genes

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