Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 0.0e+00 1291.2 665 100.0
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 0.0e+00 1271.9 665 98.2
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 0.0e+00 1223.0 664 95.2
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 4.3e-260 901.4 668 74.7
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 6.8e-250 867.5 668 71.9
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.4e-210 736.9 682 62.5
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 1.4e-210 736.9 673 63.4
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 9.3e-207 724.2 704 59.7
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 8.8e-173 611.3 630 56.8
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 5.3e-170 602.1 617 56.9
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 3.5e-169 599.4 622 56.9
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 3.5e-169 599.4 622 56.9
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 2.8e-163 579.7 617 56.4
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 3.7e-155 552.7 584 55.3
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 7.0e-154 548.5 585 54.7
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 2.9e-152 543.1 650 51.2
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 1.9e-151 540.4 631 51.7
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 1.2e-150 537.7 616 52.8
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 1.2e-150 537.7 665 49.6
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 3.6e-150 536.2 581 55.2
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 3.6e-150 536.2 623 53.0
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 4.7e-150 535.8 574 55.6
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 6.1e-150 535.4 582 54.0
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 8.0e-150 535.0 617 51.2
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 1.8e-149 533.9 623 53.0
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 2.3e-149 533.5 583 54.5
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 2.3e-149 533.5 614 52.9
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 2.3e-149 533.5 650 50.9
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 3.1e-149 533.1 578 55.2
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 6.8e-149 531.9 583 54.4
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 1.7e-147 527.3 580 54.0
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 8.3e-147 525.0 559 56.0
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 1.1e-146 524.6 618 52.3
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 2.4e-146 523.5 626 51.9
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 3.2e-146 523.1 670 49.7
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 4.1e-146 522.7 569 54.3
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 5.4e-146 522.3 589 52.5
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 9.2e-146 521.5 578 53.5
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.2e-145 521.2 659 49.9
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 1.2e-145 521.2 624 50.3
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 3.5e-145 519.6 640 49.8
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 2.5e-143 513.5 597 51.6
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 3.3e-143 513.1 594 53.0
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 5.6e-143 512.3 666 48.5
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 2.0e-140 503.8 617 50.9
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 2.0e-140 503.8 644 48.9
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 4.4e-140 502.7 633 49.8
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 4.4e-140 502.7 638 50.6
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 5.8e-140 502.3 644 49.2
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 2.2e-139 500.4 586 51.0
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 5.4e-138 495.7 584 50.5
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 9.2e-138 495.0 577 50.4
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 1.3e-136 491.1 594 50.8
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 3.0e-136 490.0 638 47.5
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 3.9e-136 489.6 656 47.6
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 6.6e-136 488.8 580 50.3
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 1.9e-135 487.3 587 50.9
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 1.9e-135 487.3 618 48.7
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 1.6e-134 484.2 649 47.1
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 6.2e-134 482.3 649 46.4
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 3.1e-133 479.9 580 51.7
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 2.6e-132 476.9 656 47.7
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 2.2e-131 473.8 581 49.7
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 2.9e-131 473.4 618 47.7
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 3.7e-131 473.0 648 46.0
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 4.1e-130 469.5 587 49.6
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 5.4e-130 469.2 583 49.9
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 1.2e-129 468.0 583 47.7
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 2.7e-129 466.8 587 49.1
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 1.7e-128 464.2 585 48.0
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 1.5e-127 461.1 523 51.8
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 2.8e-126 456.8 581 47.3
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 3.6e-126 456.4 584 48.1
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 1.5e-124 451.1 615 47.2
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 5.8e-124 449.1 591 47.5
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 3.8e-123 446.4 596 47.3
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 6.4e-123 445.7 719 41.6
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 1.1e-122 444.9 694 43.8
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 1.2e-121 441.4 676 43.8
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 6.0e-121 439.1 620 45.8
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 7.8e-121 438.7 642 44.9
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 1.3e-118 431.4 631 46.1
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 1.4e-117 427.9 628 45.7
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 1.3e-115 421.4 638 43.6
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 1.9e-114 417.5 606 44.6
Haze_17182 Corylus avellana HOM05D004806 ORTHO05D005397 4.2e-114 416.4 505 50.9
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 1.2e-113 414.8 659 43.9
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 1.3e-112 411.4 621 44.4
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 5.6e-111 406.0 542 46.9
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 4.5e-108 396.4 547 47.0
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 4.5e-108 396.4 539 45.5
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 2.2e-107 394.0 594 44.3
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 3.8e-107 393.3 536 46.1
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 1.9e-106 391.0 646 41.6
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 2.7e-105 387.1 562 44.7
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 6.2e-102 375.9 567 44.4
Oeu036630.1 Olea europaea HOM05D004806 ORTHO05D005397 6.2e-102 375.9 529 46.3
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 9.0e-101 372.1 587 43.6
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 1.2e-100 371.7 567 43.4
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 2.0e-100 370.9 540 45.2
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 1.4e-98 364.8 553 43.9
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 1.4e-98 364.8 553 43.9
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 8.7e-96 355.5 588 43.4
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 5.3e-93 346.3 520 41.9
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 6.3e-86 322.8 535 41.7
Manes.07G125400 Manihot esculenta HOM05D004806 ORTHO05D005397 1.2e-84 318.5 424 49.8
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 1.0e-83 315.5 523 41.5
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 1.3e-83 315.1 749 35.4
Sed0010788 Sechium edule HOM05D004806 ORTHO05D005397 6.1e-81 306.2 494 42.1
Glyma.02G254400 Glycine max HOM05D004806 ORTHO05D005397 1.0e-80 305.4 456 43.6
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 7.4e-79 299.3 210 69.0
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 6.3e-78 296.2 537 40.0
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 1.0e-75 288.9 189 75.7
CARHR134870 Cardamine hirsuta HOM05D004806 ORTHO05D005397 5.0e-67 260.0 436 41.1
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 1.9e-66 258.1 261 52.1
Lalb_Chr17g0346601 Lupinus albus HOM05D004806 ORTHO05D005397 3.7e-62 243.8 498 36.7
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 2.0e-60 238.0 247 52.2
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 1.9e-58 231.5 604 34.8
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 3.4e-47 194.1 218 46.3
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 7.5e-47 193.0 272 39.7
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 2.8e-41 174.5 212 42.0
SHI03525 Sapria himalayana HOM05D004806 ORTHO05D005397 1.8e-40 171.8 467 31.0
SMO358G0301 Selaginella moellendorffii HOM05D004806 ORTHO05D005397 3.0e-40 171.0 377 34.7
CDE09G1248 Ceratophyllum demersum HOM05D000530 ORTHO05D003341 1.2e-36 159.1 257 42.8
BcaB02g09066 Brassica carinata HOM05D004806 ORTHO05D005397 1.0e-35 156.0 208 45.2
RcHm_v2.0_Chr1g0369361 Rosa chinensis HOM05D004806 ORTHO05D005397 1.3e-35 155.6 178 55.1
Sabra10G0148400 Salix brachista HOM05D004806 ORTHO05D005397 2.1e-33 148.3 87 81.6
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 4.0e-32 144.1 140 58.6
Oeu022381.1 Olea europaea HOM05D004806 ORTHO05D005397 5.8e-31 140.2 126 61.9
Oeu059753.1 Olea europaea HOM05D004806 ORTHO05D005397 5.8e-31 140.2 148 56.1
MD07G1214200 Malus domestica HOM05D004806 ORTHO05D005397 7.5e-31 139.8 87 78.2
A05p06470 Brassica napus HOM05D004806 ORTHO05D005397 2.9e-30 137.9 109 65.1
Lalb_Chr17g0346611 Lupinus albus HOM05D004806 ORTHO05D005397 1.9e-26 125.2 87 69.0
SHI03526 Sapria himalayana HOM05D004806 ORTHO05D005397 4.0e-24 117.5 128 50.0
Os07g0100500 Oryza sativa ssp. japonica HOM05D004806 ORTHO05D005397 2.9e-22 111.3 74 67.6
ATR0618G087 Amborella trichopoda HOM05D004806 ORTHO05D005397 1.6e-20 105.5 139 51.8
CAN.G853.43 Capsicum annuum HOM05D004806 ORTHO05D005397 5.1e-19 100.5 70 75.7
AagrBONN_evm.TU.Sc2ySwM_369.624 Anthoceros agrestis HOM05D004806 ORTHO05D005397 2.8e-17 94.7 429 26.6
Oeu043075.1 Olea europaea HOM05D004806 ORTHO05D005397 1.9e-13 82.0 107 50.5
Zm00001eb057510 Zea mays HOM05D004806 ORTHO05D005397 2.4e-13 81.6 73 47.9
ATR0723G011 Amborella trichopoda HOM05D004806 ORTHO05D005397 5.4e-13 80.5 72 51.4
RcHm_v2.0_Chr1g0313541 Rosa chinensis HOM05D004806 ORTHO05D005397 7.8e-12 76.6 62 62.9
Haze_17183 Corylus avellana HOM05D004806 ORTHO05D005397 2.3e-11 75.1 75 57.3
SalBow6G4818 Salvia bowleyana HOM05D004806 ORTHO05D005397 1.2e-09 69.3 102 44.1
Oeu021121.1 Olea europaea HOM05D004806 ORTHO05D005397 6.2e-09 67.0 42 71.4
Oeu059752.1 Olea europaea HOM05D004806 ORTHO05D005397 1.4e-08 65.9 134 33.6
Pp3c26_8620 Physcomitrium patens HOM05D004806 ORTHO05D005397 3.1e-08 64.7 102 36.3
Ah.05g175410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 8.9e-08 63.2 48 66.7
SalBow2G3552 Salvia bowleyana HOM05D034888 ORTHO05D005397 3.4e-07 61.2 86 40.7


User provided reference genes

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