Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 7.8e-302 1039.6 514 100.0
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 6.0e-270 933.7 503 90.3
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 6.2e-251 870.5 503 85.5
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 1.6e-243 845.9 434 96.5
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.8e-242 842.4 478 87.7
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 3.4e-241 838.2 460 87.0
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.8e-229 799.3 525 76.0
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 4.3e-228 794.7 513 76.4
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 2.8e-227 792.0 503 77.3
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 3.2e-223 778.5 465 80.9
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 2.3e-221 772.3 508 73.6
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 2.0e-220 769.2 465 80.4
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 8.2e-219 763.8 465 80.2
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 7.0e-218 760.8 492 74.2
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 2.4e-210 735.7 525 68.6
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 1.5e-207 726.5 481 71.7
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 5.5e-207 724.5 488 71.3
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 1.2e-206 723.4 498 69.1
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.2e-206 723.4 506 69.0
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 2.7e-206 722.2 495 69.7
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 3.6e-206 721.8 489 71.2
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 3.0e-205 718.8 494 70.0
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 6.8e-205 717.6 489 70.1
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 2.0e-204 716.1 479 71.2
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 4.4e-204 714.9 485 70.9
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 7.5e-204 714.1 465 72.0
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 6.3e-203 711.1 498 69.7
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 8.3e-203 710.7 478 71.8
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 2.4e-202 709.1 487 70.2
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 5.3e-202 708.0 485 69.5
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 1.2e-201 706.8 455 72.7
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 2.7e-201 705.7 482 68.3
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.7e-201 705.7 486 67.9
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.7e-201 705.7 486 67.9
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 3.5e-201 705.3 502 68.3
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 5.9e-201 704.5 463 72.1
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 7.7e-201 704.1 482 68.0
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 7.7e-201 704.1 499 67.3
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 3.8e-200 701.8 501 68.3
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 3.8e-200 701.8 458 72.9
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 8.5e-200 700.7 499 66.7
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 8.5e-200 700.7 463 72.6
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 1.1e-199 700.3 502 67.5
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 1.5e-199 699.9 458 72.7
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 1.5e-199 699.9 491 67.4
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 1.9e-199 699.5 468 70.9
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 1.9e-199 699.5 488 67.2
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 3.2e-199 698.7 482 67.6
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 3.2e-199 698.7 495 68.9
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 4.2e-199 698.4 487 68.8
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 5.5e-199 698.0 482 70.5
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 9.4e-199 697.2 499 66.5
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.6e-198 696.4 470 70.9
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 2.1e-198 696.0 457 72.2
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 3.6e-198 695.3 353 98.6
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 1.0e-197 693.7 461 72.7
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 1.4e-197 693.3 493 68.2
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 2.3e-197 692.6 491 68.2
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 4.0e-197 691.8 495 67.5
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 2.0e-196 689.5 487 66.9
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 3.4e-196 688.7 486 69.5
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 3.4e-196 688.7 458 71.4
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 7.5e-196 687.6 491 67.6
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 7.5e-196 687.6 580 59.3
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 1.3e-195 686.8 492 67.9
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.7e-195 686.4 434 74.9
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 1.7e-195 686.4 488 66.6
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 1.7e-195 686.4 478 68.8
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 4.8e-195 684.9 472 70.6
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 4.8e-195 684.9 495 66.5
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 8.3e-195 684.1 428 77.8
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 1.4e-194 683.3 475 69.3
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.8e-194 682.9 498 64.9
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 4.1e-194 681.8 481 69.2
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 5.4e-194 681.4 492 65.7
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 7.0e-194 681.0 469 68.4
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 2.7e-193 679.1 492 65.2
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.3e-192 676.8 472 69.1
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 1.7e-192 676.4 493 66.3
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.7e-192 676.4 502 64.7
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 2.3e-192 676.0 465 68.4
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 8.6e-192 674.1 486 66.3
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 4.2e-191 671.8 449 71.0
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 2.3e-189 666.0 493 65.3
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 2.3e-189 666.0 473 66.2
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 6.8e-189 664.5 484 64.9
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 3.4e-188 662.1 500 64.4
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 5.7e-188 661.4 525 61.3
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 7.5e-188 661.0 533 62.7
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 6.3e-187 657.9 475 65.1
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 6.3e-187 657.9 467 66.4
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 1.4e-186 656.8 470 66.2
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.4e-186 656.8 512 63.3
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 1.8e-186 656.4 488 64.5
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 4.1e-186 655.2 488 63.7
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 7.0e-186 654.4 477 64.4
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 7.0e-186 654.4 411 74.7
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 1.2e-185 653.7 473 65.1
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 3.5e-185 652.1 484 65.9
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 2.5e-183 646.0 488 63.1
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 9.5e-183 644.0 458 68.1
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 1.2e-182 643.7 494 63.2
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 3.6e-182 642.1 575 56.3
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 1.8e-181 639.8 475 64.6
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 1.8e-181 639.8 475 64.6
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 1.8e-181 639.8 475 64.6
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 2.3e-181 639.4 493 63.3
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 2.3e-181 639.4 462 64.7
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 1.2e-180 637.1 493 63.1
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 1.7e-179 633.3 481 63.0
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 1.7e-179 633.3 513 61.4
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 6.4e-179 631.3 475 63.4
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 1.1e-178 630.6 475 63.4
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.1e-178 628.6 377 77.5
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 5.4e-178 628.2 464 64.9
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 5.4e-178 628.2 471 64.1
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 7.0e-178 627.9 499 61.7
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 4.6e-177 625.2 446 66.8
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 2.5e-175 619.4 506 60.5
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 3.3e-175 619.0 621 53.6
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 7.3e-175 617.8 500 61.0
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 5.2e-173 611.7 500 60.8
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 6.8e-173 611.3 479 63.0
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 2.0e-172 609.8 492 60.6
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 6.4e-171 604.7 461 62.3
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 1.7e-168 596.7 420 65.5
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 2.3e-168 596.3 462 62.6
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 1.6e-166 590.1 440 64.1
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 3.6e-166 589.0 504 59.3
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 4.0e-165 585.5 438 63.7
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 3.5e-161 572.4 513 57.1
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 1.5e-159 567.0 432 64.6
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 2.2e-155 553.1 426 62.4
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.3e-152 543.9 485 57.5
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 1.5e-151 540.4 498 55.6
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 8.1e-142 508.1 471 55.6
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 3.4e-140 502.7 364 66.5
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 2.1e-134 483.4 507 46.9
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 2.4e-133 479.9 482 52.5
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 3.8e-131 472.6 485 48.7
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 1.9e-130 470.3 470 50.0
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 5.5e-122 442.2 414 51.2
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 2.5e-114 416.8 519 43.9
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 1.5e-108 397.5 304 63.5
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.6e-105 387.5 264 72.3
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 1.0e-91 341.7 320 55.3
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 9.8e-79 298.5 199 70.4
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.1e-69 268.5 212 62.3
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 5.6e-58 229.6 213 55.4
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 1.1e-50 205.3 160 62.5
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 3.3e-42 177.2 326 34.7
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 3.4e-39 167.2 620 26.5
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 2.2e-38 164.5 100 76.0
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 1.1e-37 162.2 106 68.9
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.3e-33 148.7 149 55.0
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 2.9e-30 137.5 111 64.0
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 4.9e-30 136.7 111 64.0
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 6.4e-30 136.3 113 55.8
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.3e-27 127.9 86 65.1
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 1.1e-24 119.0 81 66.7
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 5.3e-24 116.7 99 57.6
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.4e-21 108.6 71 66.2
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.4e-21 107.8 113 57.5
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 4.2e-21 107.1 83 59.0
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 5.1e-19 100.1 119 50.4
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 4.3e-18 97.1 62 67.7
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 2.3e-11 74.7 85 52.9
MELO3C018376.2 Cucumis melo HOM05D003877 ORTHO05D004647 6.7e-11 73.2 49 67.3
TPR.G30156 Trifolium pratense HOM05D003877 ORTHO05D004647 8.7e-11 72.8 74 50.0
TPR.G5048 Trifolium pratense HOM05D003877 ORTHO05D004647 1.1e-10 72.4 74 50.0
CSS0003201 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.3e-10 70.5 60 58.3
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 1.4e-08 65.5 42 71.4
SEGI_18884 Sequoiadendron giganteum HOM05D003877 ORTHO05D038325 1.3e-06 58.9 43 51.2
PSO017G6761 Papaver somniferum HOM05D000240 ORTHO05D004647 5.0e-06 57.0 59 40.7


User provided reference genes

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