Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 6.6e-120 434.1 227 100.0
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 1.6e-97 359.8 235 81.3
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 7.6e-68 261.2 230 64.8
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 5.7e-55 218.4 258 52.3
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 4.8e-46 188.7 203 53.2
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 3.1e-45 186.0 163 62.0
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 3.5e-44 182.6 198 52.0
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 8.5e-43 177.9 199 51.3
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 1.1e-42 177.6 201 48.3
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 1.6e-41 173.7 196 46.9
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 2.7e-41 172.9 227 48.0
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 5.2e-40 168.7 201 46.8
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 5.2e-40 168.7 197 49.7
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 6.7e-40 168.3 197 49.7
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 1.7e-35 153.7 138 60.9
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 2.9e-35 152.9 230 38.7
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 8.5e-35 151.4 215 40.0
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 3.2e-34 149.4 226 38.5
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 3.2e-34 149.4 217 40.1
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 5.5e-34 148.7 217 39.6
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 7.2e-34 148.3 217 37.3
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 9.4e-34 147.9 174 43.7
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 1.2e-33 147.5 180 41.1
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 4.7e-33 145.6 207 43.5
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 4.7e-33 145.6 202 40.6
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 8.0e-33 144.8 180 49.4
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 1.4e-32 144.1 220 37.7
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 2.3e-32 143.3 223 37.7
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 2.3e-32 143.3 221 37.1
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 4.0e-32 142.5 219 37.9
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 5.2e-32 142.1 176 44.9
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 5.2e-32 142.1 169 45.0
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 6.8e-32 141.7 182 41.8
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 6.8e-32 141.7 196 42.9
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 8.8e-32 141.4 216 40.3
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 8.8e-32 141.4 181 44.2
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 1.2e-31 141.0 181 43.6
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 1.5e-31 140.6 181 40.9
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 3.4e-31 139.4 201 38.8
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 3.4e-31 139.4 198 40.9
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 5.7e-31 138.7 180 41.7
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 9.8e-31 137.9 214 39.3
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 9.8e-31 137.9 180 41.1
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 1.3e-30 137.5 188 39.4
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 1.3e-30 137.5 241 36.5
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 1.3e-30 137.5 175 43.4
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.7e-30 137.1 176 42.0
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 1.7e-30 137.1 175 43.4
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 2.2e-30 136.7 210 40.0
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 2.2e-30 136.7 180 40.6
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 2.2e-30 136.7 180 40.6
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 2.8e-30 136.3 173 43.4
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 4.8e-30 135.6 202 38.6
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 6.3e-30 135.2 172 43.6
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 6.3e-30 135.2 202 40.6
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 8.3e-30 134.8 179 43.0
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 8.3e-30 134.8 215 35.8
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 1.1e-29 134.4 225 38.2
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 1.1e-29 134.4 171 42.1
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.1e-29 134.4 229 34.9
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 1.8e-29 133.7 176 39.2
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 1.8e-29 133.7 176 40.9
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 1.8e-29 133.7 176 39.2
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 1.8e-29 133.7 176 40.9
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 3.1e-29 132.9 186 41.4
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 4.1e-29 132.5 211 37.4
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 4.1e-29 132.5 181 42.5
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 4.1e-29 132.5 181 42.5
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 4.1e-29 132.5 199 39.2
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 5.4e-29 132.1 221 36.2
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 5.4e-29 132.1 219 37.0
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 5.4e-29 132.1 221 36.2
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 5.4e-29 132.1 221 36.7
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 9.1e-29 131.3 209 37.8
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 9.1e-29 131.3 209 37.8
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 1.2e-28 131.0 177 39.5
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 1.2e-28 131.0 220 37.7
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 2.0e-28 130.2 169 41.4
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 3.5e-28 129.4 206 35.9
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 4.5e-28 129.0 214 37.4
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 7.7e-28 128.3 188 37.8
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 1.0e-27 127.9 209 34.9
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 1.3e-27 127.5 183 41.0
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 2.9e-27 126.3 177 39.5
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.9e-27 126.3 170 38.8
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 5.0e-27 125.6 170 38.2
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 5.0e-27 125.6 183 39.9
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 6.5e-27 125.2 170 38.8
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 6.5e-27 125.2 170 38.8
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 8.5e-27 124.8 211 35.5
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 8.5e-27 124.8 166 45.2
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 8.5e-27 124.8 215 35.8
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 1.9e-26 123.6 183 39.3
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 2.5e-26 123.2 181 40.9
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 4.2e-26 122.5 179 38.5
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 5.5e-26 122.1 207 37.7
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 7.2e-26 121.7 195 35.9
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 7.2e-26 121.7 195 35.9
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 7.2e-26 121.7 179 38.5
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 1.6e-25 120.6 172 39.0
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 2.1e-25 120.2 196 36.7
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 2.7e-25 119.8 194 35.6
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 3.6e-25 119.4 176 36.4
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 3.6e-25 119.4 166 38.6
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 4.7e-25 119.0 176 36.4
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 4.7e-25 119.0 176 36.4
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 6.1e-25 118.6 184 38.0
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 8.0e-25 118.2 176 36.9
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 3.0e-24 116.3 150 46.0
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 4.0e-24 115.9 182 38.5
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 4.0e-24 115.9 175 40.0
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 5.2e-24 115.5 179 35.2
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 6.8e-24 115.2 176 35.8
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 6.8e-24 115.2 176 35.8
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 8.8e-24 114.8 174 36.2
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 8.8e-24 114.8 179 36.9
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 8.8e-24 114.8 174 36.8
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.2e-23 114.4 156 41.0
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 1.2e-23 114.4 177 40.7
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 5.7e-23 112.1 182 33.5
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 7.5e-23 111.7 188 37.2
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 1.7e-22 110.5 201 33.3
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 3.7e-22 109.4 177 40.1
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 4.9e-22 109.0 185 35.7
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 6.3e-22 108.6 238 31.1
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 6.3e-22 108.6 196 37.8
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 3.1e-21 106.3 175 36.0
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 3.1e-21 106.3 231 32.5
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.1e-21 105.9 238 31.5
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 4.1e-21 105.9 189 36.0
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 7.0e-21 105.1 189 34.9
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 9.1e-21 104.8 211 33.2
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 1.6e-20 104.0 196 33.7
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 1.6e-20 104.0 190 34.7
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 2.0e-20 103.6 184 40.2
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 3.5e-20 102.8 187 35.3
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 3.5e-20 102.8 170 32.4
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 4.5e-20 102.4 100 58.0
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 4.5e-20 102.4 206 28.6
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 2.3e-19 100.1 184 35.9
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 2.9e-19 99.8 180 35.6
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 8.6e-19 98.2 169 34.3
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 4.3e-18 95.9 138 38.4
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 4.3e-18 95.9 181 35.4
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 9.5e-18 94.7 169 31.4
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 2.1e-17 93.6 180 33.9
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 3.6e-17 92.8 140 36.4
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 8.9e-16 88.2 140 35.0
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 2.6e-15 86.7 140 35.0
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 4.4e-15 85.9 174 32.8
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 2.2e-14 83.6 204 30.9
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 2.9e-14 83.2 200 29.0
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 8.3e-14 81.6 117 35.0
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 8.3e-14 81.6 174 29.3
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 1.4e-13 80.9 91 44.0
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 2.4e-13 80.1 153 32.0
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 4.1e-13 79.3 190 30.0
Solyc05g052230.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 5.4e-13 79.0 51 86.3
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 9.2e-13 78.2 188 29.3
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 7.8e-12 75.1 197 29.4
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 1.7e-11 73.9 126 34.1
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 6.6e-11 72.0 64 54.7
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 1.9e-10 70.5 78 44.9


User provided reference genes

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