Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g029890 Solanum pennellii HOM05D008176 ORTHO05D004477 3.7e-67 258.1 131 100.0
PGSC0003DMG400016792 Solanum tuberosum HOM05D008176 ORTHO05D004477 4.9e-51 204.5 135 80.7
Peaxi162Scf00237g00201 Petunia axillaris HOM05D008176 ORTHO05D004477 4.9e-35 151.4 141 62.4
Sopen11g005030 Solanum pennellii HOM05D008176 ORTHO05D004477 7.1e-34 147.5 141 61.0
Nitab4.5_0000128g0240 Nicotiana tabacum HOM05D008176 ORTHO05D004477 1.7e-32 142.9 125 68.8
Nitab4.5_0012818g0010 Nicotiana tabacum HOM05D008176 ORTHO05D004477 1.7e-32 142.9 134 64.2
PGSC0003DMG400016791 Solanum tuberosum HOM05D008176 ORTHO05D004477 9.6e-31 137.1 129 61.2
Solyc11g010250.1 Solanum lycopersicum HOM05D008176 ORTHO05D004477 1.3e-30 136.7 142 57.7
PGSC0003DMG400016149 Solanum tuberosum HOM05D008176 ORTHO05D004477 2.8e-30 135.6 141 58.2
Sopen05g029880 Solanum pennellii HOM05D008176 ORTHO05D004477 2.6e-28 129.0 121 63.6
Nitab4.5_0000241g0190 Nicotiana tabacum HOM05D008176 ORTHO05D004477 2.9e-19 99.0 95 66.3
Nitab4.5_0003888g0010 Nicotiana tabacum HOM05D013332 ORTHO05D004477 1.4e-18 96.7 95 65.3
TAR625G0942 Trochodendron aralioides HOM05D008046 ORTHO05D004477 3.5e-17 92.0 122 49.2
CiPaw.03G145800 Carya illinoinensis HOM05D008176 ORTHO05D004477 3.0e-16 89.0 141 46.8
COL.COLO4_27295 Corchorus olitorius HOM05D008176 ORTHO05D004477 5.7e-15 84.7 142 45.1
Nn5g30002 Nelumbo nucifera HOM05D008176 ORTHO05D004477 5.7e-15 84.7 135 43.0
Atru.chr3.1344 Acer truncatum HOM05D008176 ORTHO05D004477 1.6e-14 83.2 132 44.7
GSVIVG01009081001 Vitis vinifera HOM05D008046 ORTHO05D004477 2.1e-14 82.8 135 40.0
TAR381G0533 Trochodendron aralioides HOM05D008046 ORTHO05D004477 4.8e-14 81.6 130 45.4
QL06p048130 Quercus lobata HOM05D008176 ORTHO05D004477 8.2e-14 80.9 137 45.3
Gohir.A02G129700 Gossypium hirsutum HOM05D008176 ORTHO05D004477 5.3e-13 78.2 132 42.4
Thecc.01G095600 Theobroma cacao HOM05D008176 ORTHO05D004477 6.9e-13 77.8 135 44.4
TWI53G0271 Tripterygium wilfordii HOM05D008176 ORTHO05D004477 1.2e-12 77.0 130 38.5
Gohir.D03G040500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 3.4e-12 75.5 132 39.4
Dinv13234 Davidia involucrata HOM05D008176 ORTHO05D004477 4.5e-12 75.1 132 45.5
Gorai.003G041400 Gossypium raimondii HOM05D008176 ORTHO05D004477 4.5e-12 75.1 132 39.4
Manes.12G129900 Manihot esculenta HOM05D008176 ORTHO05D004477 4.5e-12 75.1 145 42.1
CiPaw.04G103600 Carya illinoinensis HOM05D008176 ORTHO05D004477 1.3e-11 73.6 134 44.0
TAR628G0226 Trochodendron aralioides HOM05D008046 ORTHO05D004477 1.7e-11 73.2 135 41.5
Gohir.A11G051100 Gossypium hirsutum HOM05D008176 ORTHO05D004477 2.2e-11 72.8 145 42.1
MSTRG.23362 Avicennia marina HOM05D008176 ORTHO05D004477 3.8e-11 72.0 140 40.7
Haze_24851 Corylus avellana HOM05D008176 ORTHO05D004477 6.5e-11 71.2 138 43.5
TWI74G1149 Tripterygium wilfordii HOM05D008176 ORTHO05D004477 8.4e-11 70.9 130 35.4
Ciclev10026640m.g Citrus clementina HOM05D008176 ORTHO05D004477 1.1e-10 70.5 135 39.3
Gorai.007G059700 Gossypium raimondii HOM05D008176 ORTHO05D004477 1.4e-10 70.1 145 40.7
Potri.005G072000 Populus trichocarpa HOM05D008176 ORTHO05D004477 1.4e-10 70.1 131 42.0
Lsat_1_v5_gn_1_3180 Lactuca sativa HOM05D008046 ORTHO05D004477 1.9e-10 69.7 136 37.5
Nn1g05455 Nelumbo nucifera HOM05D008046 ORTHO05D004477 2.5e-10 69.3 134 38.1
Medtr8g089920 Medicago truncatula HOM05D008176 ORTHO05D004477 3.2e-10 68.9 123 41.5
Hma1.2p1_0019F.1_g013800 Hydrangea macrophylla HOM05D013332 ORTHO05D004477 4.2e-10 68.6 159 35.8
Duzib264G0386 Durio zibethinus HOM05D008176 ORTHO05D004477 5.5e-10 68.2 140 39.3
RcHm_v2.0_Chr2g0112381 Rosa chinensis HOM05D013332 ORTHO05D004477 5.5e-10 68.2 161 37.3
Duzib187G0825 Durio zibethinus HOM05D008176 ORTHO05D004477 7.2e-10 67.8 136 39.0
Sabra07G0080300 Salix brachista HOM05D008176 ORTHO05D004477 7.2e-10 67.8 134 40.3
DCAR_014203 Daucus carota HOM05D013332 ORTHO05D004477 9.3e-10 67.4 132 38.6
SGA_v2.0_scaffold108G30894 Striga asiatica HOM05D008176 ORTHO05D004477 9.3e-10 67.4 158 35.4
Glyma.08G133100 Glycine max HOM05D008176 ORTHO05D004477 1.2e-09 67.0 129 38.8
Aqoxy6G00716 Aquilegia oxysepala HOM05D008046 ORTHO05D004477 1.6e-09 66.6 141 35.5
Ca_08988_v3 Cicer arietinum L. HOM05D008176 ORTHO05D004477 1.6e-09 66.6 129 39.5
Gohir.D11G054500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 1.6e-09 66.6 149 37.6
Psat7g056440 Pisum sativum HOM05D008176 ORTHO05D004477 2.1e-09 66.2 129 39.5
FAN23G0907 Fragaria x ananassa HOM05D013332 ORTHO05D004477 2.7e-09 65.9 159 37.7
Gohir.A11G204400 Gossypium hirsutum HOM05D008176 ORTHO05D004477 2.7e-09 65.9 139 38.1
TWI12G0518 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 2.7e-09 65.9 145 38.6
Gorai.007G235100 Gossypium raimondii HOM05D008176 ORTHO05D004477 3.5e-09 65.5 139 37.4
Gohir.D11G218800 Gossypium hirsutum HOM05D008176 ORTHO05D004477 6.1e-09 64.7 138 37.7
TPR.G6203 Trifolium pratense HOM05D008176 ORTHO05D004477 6.1e-09 64.7 130 39.2
Cpa.g.sc55.74 Carica papaya HOM05D008176 ORTHO05D004477 1.8e-08 63.2 145 37.2
QL02p002440 Quercus lobata HOM05D008046 ORTHO05D004477 1.8e-08 63.2 135 38.5
SalBow3G2508 Salvia bowleyana HOM05D029310 ORTHO05D004477 1.8e-08 63.2 127 37.0
SalBow3G3284 Salvia bowleyana HOM05D029310 ORTHO05D004477 1.8e-08 63.2 127 37.0
FAN28G1274 Fragaria x ananassa HOM05D013332 ORTHO05D004477 2.3e-08 62.8 159 37.1
Manes.13G096700 Manihot esculenta HOM05D008176 ORTHO05D004477 3.0e-08 62.4 133 36.8
Glyma.05G175800 Glycine max HOM05D008176 ORTHO05D004477 3.9e-08 62.0 127 37.8
Potri.005G161700 Populus trichocarpa HOM05D008046 ORTHO05D004477 3.9e-08 62.0 129 37.2
Sc26g0000200 Simmondsia chinensis HOM05D013332 ORTHO05D004477 3.9e-08 62.0 143 40.6
FAN26G3011 Fragaria x ananassa HOM05D013332 ORTHO05D004477 6.7e-08 61.2 159 36.5
VMungo1383G1959 Vigna mungo HOM05D008176 ORTHO05D004477 6.7e-08 61.2 137 38.0
Eucgr.B00040 Eucalyptus grandis HOM05D008046 ORTHO05D004477 8.7e-08 60.8 137 38.7
Lj4g0008028 Lotus japonicus HOM05D008176 ORTHO05D004477 1.1e-07 60.5 129 37.2
Lsat_1_v5_gn_6_104300 Lactuca sativa HOM05D008046 ORTHO05D004477 1.5e-07 60.1 113 38.1
Phvul.001G253900 Phaseolus vulgaris HOM05D008176 ORTHO05D004477 1.5e-07 60.1 115 38.3
CSS0034401 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 2.5e-07 59.3 130 40.0
FAN19G2695 Fragaria x ananassa HOM05D013332 ORTHO05D004477 2.5e-07 59.3 159 36.5
Phvul.002G260800 Phaseolus vulgaris HOM05D008176 ORTHO05D004477 2.5e-07 59.3 128 39.8
Cfa002600 Carpinus fangiana HOM05D008176 ORTHO05D004477 3.3e-07 58.9 140 38.6
CSS0039341 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 4.3e-07 58.5 130 40.0
FvH4_1g20240 Fragaria vesca HOM05D013332 ORTHO05D004477 5.7e-07 58.2 159 36.5
CSS0041686 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 1.3e-06 57.0 143 35.7
Carub.0008s2618 Capsella rubella HOM05D010563 ORTHO05D012591 1.3e-06 57.0 137 37.2
Hma1.2p1_1148F.1_g261600 Hydrangea macrophylla HOM05D008046 ORTHO05D004477 1.6e-06 56.6 119 38.7
Potri.007G097000 Populus trichocarpa HOM05D008176 ORTHO05D004477 1.6e-06 56.6 126 37.3
CSS0046665 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 2.8e-06 55.8 143 35.7
Oeu048965.1 Olea europaea HOM05D008046 ORTHO05D004477 2.8e-06 55.8 120 35.0
Cc10_g06700 Coffea canephora HOM05D008046 ORTHO05D004477 3.7e-06 55.5 147 33.3
Ah.02g126210 Amaranthus hybridus HOM05D031888 ORTHO05D004477 4.8e-06 55.1 164 32.9
Sc23g0000380 Simmondsia chinensis HOM05D008046 ORTHO05D004477 4.8e-06 55.1 142 37.3
Glyma.18G015000 Glycine max HOM05D008176 ORTHO05D004477 8.2e-06 54.3 116 37.1


User provided reference genes

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