Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 0.0e+00 1159.8 698 100.0
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 0.0e+00 1146.7 699 99.0
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 4.9e-307 1057.4 700 83.7
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 8.4e-283 976.9 706 75.5
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 3.6e-278 961.4 698 75.1
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 8.4e-275 950.3 702 74.4
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 8.8e-240 833.9 709 66.0
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 4.7e-201 705.3 715 55.5
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 1.6e-196 690.3 720 56.4
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 1.9e-186 656.8 704 52.6
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 8.1e-185 651.4 745 51.1
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 6.8e-184 648.3 708 53.7
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 1.9e-181 640.2 713 53.3
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 9.2e-181 637.9 703 51.2
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 1.6e-180 637.1 703 50.9
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 6.0e-180 635.2 703 50.8
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 2.3e-179 633.3 706 52.3
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 3.9e-179 632.5 728 52.1
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 5.6e-178 628.6 707 51.6
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 2.1e-177 626.7 707 51.3
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 2.0e-175 620.2 711 51.8
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 5.8e-175 618.6 712 50.4
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 2.3e-171 606.7 701 49.8
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 5.6e-170 602.1 713 50.8
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 9.6e-170 601.3 716 50.4
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 2.8e-169 599.7 713 50.6
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 6.2e-169 598.6 717 50.6
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 3.1e-168 596.3 727 49.9
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 4.0e-168 595.9 717 57.5
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 5.8e-167 592.0 716 49.6
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 7.6e-167 591.7 713 51.5
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 8.4e-166 588.2 708 49.2
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 2.4e-165 586.6 713 50.9
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 4.2e-165 585.9 605 55.4
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 5.1e-163 578.9 723 48.3
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 2.5e-162 576.6 705 48.5
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 9.6e-162 574.7 706 47.5
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 2.4e-160 570.1 661 51.0
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 4.5e-159 565.8 698 48.7
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 1.7e-158 563.9 706 47.2
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 1.4e-157 560.8 718 47.5
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 2.4e-157 560.1 722 51.2
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.2e-156 557.8 660 49.4
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 1.0e-155 554.7 712 48.9
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 3.3e-154 549.7 704 47.6
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 4.3e-154 549.3 704 47.9
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 1.1e-152 544.7 709 48.5
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 6.9e-152 542.0 678 48.4
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 2.6e-151 540.0 683 48.2
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 3.5e-148 529.6 710 46.1
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 6.0e-148 528.9 712 45.5
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 3.0e-147 526.6 718 46.2
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 6.7e-147 525.4 713 52.5
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 1.9e-146 523.9 720 49.0
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 5.7e-146 522.3 712 45.8
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 9.6e-146 521.5 713 50.1
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 1.1e-144 518.1 711 45.9
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 5.3e-144 515.8 702 51.9
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 5.3e-144 515.8 702 51.9
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 5.0e-142 509.2 661 50.8
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 8.4e-142 508.4 714 45.7
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 3.2e-141 506.5 721 43.6
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 7.2e-141 505.4 701 51.1
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 9.3e-141 505.0 718 44.0
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 1.2e-140 504.6 711 44.6
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 1.5e-138 497.7 720 44.0
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 2.8e-137 493.4 707 45.4
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 3.7e-137 493.0 716 43.7
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 3.7e-137 493.0 710 44.4
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 1.4e-136 491.1 707 45.3
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 3.4e-135 486.5 717 43.7
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 4.5e-135 486.1 712 44.0
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 4.5e-135 486.1 712 43.4
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 5.9e-135 485.7 712 43.4
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 1.6e-132 477.6 728 44.4
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 1.6e-132 477.6 709 44.7
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 4.6e-132 476.1 708 46.8
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 2.3e-131 473.8 675 44.1
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 4.3e-130 469.5 710 45.4
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 1.3e-129 468.0 707 42.6
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 1.7e-126 457.6 570 47.2
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 2.7e-124 450.3 701 41.9
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 6.1e-124 449.1 704 42.9
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 1.4e-123 448.0 718 41.5
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 1.4e-123 448.0 718 41.5
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 9.7e-122 441.8 704 43.9
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 3.7e-121 439.9 721 39.9
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 8.2e-121 438.7 704 46.0
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 1.4e-120 438.0 721 39.8
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 5.9e-119 432.6 455 54.7
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 2.2e-118 430.6 407 56.3
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 2.0e-114 417.5 665 42.6
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 5.7e-114 416.0 712 43.7
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 6.3e-113 412.5 701 40.8
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 5.3e-112 409.5 708 42.4
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 2.7e-111 407.1 709 41.2
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 9.4e-109 398.7 705 45.8
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 1.3e-105 388.3 357 59.1
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 3.1e-104 383.6 512 46.9
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 6.5e-102 375.9 699 43.9
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 2.0e-95 354.4 711 37.3
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 2.6e-90 337.4 748 36.2
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.8e-88 331.3 180 92.2
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 1.1e-85 322.0 294 57.5
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 3.9e-78 297.0 479 41.3
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 2.3e-75 287.7 474 39.7
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.9e-64 251.5 127 96.1
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 7.3e-61 239.6 335 47.5
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 3.8e-49 200.7 517 31.5
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 8.4e-49 199.5 273 45.4
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 3.0e-46 191.0 294 40.5
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 3.0e-46 191.0 574 30.7
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 1.3e-44 185.7 131 70.2
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 8.4e-41 172.9 139 61.9
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 4.0e-35 154.1 140 62.9
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 7.1e-32 143.3 168 48.2
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 7.1e-32 143.3 113 61.1
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 2.7e-31 141.4 376 35.4
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 3.5e-31 141.0 594 26.9
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.1e-29 136.0 102 66.7
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 7.4e-29 133.3 507 27.6
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.8e-28 131.3 200 40.5
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 4.8e-28 130.6 500 27.4
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 3.2e-24 117.9 585 24.3
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 4.6e-23 114.0 75 69.3
Solyc02g062815.1 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.8e-19 102.1 50 98.0
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 5.3e-19 100.5 135 42.2
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 2.6e-18 98.2 109 49.5
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 2.2e-17 95.1 266 40.2
ATR0767G001 Amborella trichopoda HOM05D005482 ORTHO05D006502 2.7e-15 88.2 138 43.5
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.7e-15 88.2 128 37.5
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 7.9e-15 86.7 75 61.3
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 1.4e-14 85.9 78 57.7
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 9.7e-13 79.7 252 36.9
Solyc02g062813.1 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.4e-11 75.9 37 94.6
CDE07G1566 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.6e-10 71.6 132 41.7
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 2.2e-09 68.6 66 50.0
TAR375G0200 Trochodendron aralioides HOM05D005482 ORTHO05D006502 8.5e-09 66.6 72 54.2


User provided reference genes

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