Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g028970 Solanum pennellii HOM05D003086 ORTHO05D003347 1.8e-32 142.1 78 100.0
PGSC0003DMG400007045 Solanum tuberosum HOM05D003086 ORTHO05D003347 1.7e-19 99.0 61 91.8
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 1.0e-16 89.7 74 59.5
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 2.6e-15 85.1 71 54.9
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 5.7e-15 84.0 70 58.6
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 7.5e-15 83.6 71 53.5
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 2.9e-14 81.6 71 53.5
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.9e-14 81.6 62 62.9
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 1.4e-13 79.3 62 59.7
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 1.8e-13 79.0 70 54.3
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.4e-13 78.6 65 61.5
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.4e-13 78.6 65 61.5
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 3.2e-13 78.2 75 49.3
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.1e-13 77.8 63 63.5
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 7.0e-13 77.0 69 53.6
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 1.2e-12 76.3 65 60.0
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 1.6e-12 75.9 63 55.6
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 2.7e-12 75.1 62 58.1
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 3.5e-12 74.7 65 56.9
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 4.6e-12 74.3 74 51.4
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 5.9e-12 73.9 65 58.5
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 7.8e-12 73.6 63 58.7
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 2.9e-11 71.6 60 55.0
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.9e-11 71.6 63 58.7
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 2.9e-11 71.6 63 50.8
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 3.9e-11 71.2 78 47.4
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 3.9e-11 71.2 64 57.8
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 5.0e-11 70.9 61 54.1
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 1.5e-10 69.3 60 53.3
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 2.5e-10 68.6 64 51.6
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 4.3e-10 67.8 59 55.9
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 5.6e-10 67.4 63 47.6
Migut.N01532 Erythranthe guttata HOM05D003086 ORTHO05D003347 9.5e-10 66.6 60 60.0
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 9.5e-10 66.6 62 54.8
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 8.0e-09 63.5 61 47.5
Glyma.07G054300 Glycine max HOM05D003086 ORTHO05D003347 8.0e-09 63.5 38 71.1
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 8.0e-09 63.5 45 66.7
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 1.4e-08 62.8 63 49.2
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 1.4e-08 62.8 38 68.4
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 1.4e-08 62.8 58 50.0
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 1.8e-08 62.4 72 48.6
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 3.1e-08 61.6 62 45.2
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 3.1e-08 61.6 61 49.2
Phvul.010G115200 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 4.0e-08 61.2 39 69.2
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 4.0e-08 61.2 58 53.4
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 4.0e-08 61.2 72 44.4
Lj3g0004362 Lotus japonicus HOM05D003086 ORTHO05D003347 5.2e-08 60.8 44 63.6
SEGI_15730 Sequoiadendron giganteum HOM05D003086 ORTHO05D003347 5.2e-08 60.8 60 60.0
CANSAT21G0721 Cannabis sativa HOM05D003086 ORTHO05D003347 6.8e-08 60.5 69 44.9
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 6.8e-08 60.5 61 49.2
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.2e-07 59.7 66 47.0
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 1.5e-07 59.3 62 50.0
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 2.0e-07 58.9 41 58.5
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 2.0e-07 58.9 53 52.8
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 2.6e-07 58.5 67 49.3
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 2.6e-07 58.5 67 49.3
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 2.6e-07 58.5 67 49.3
Sc23g0002030 Simmondsia chinensis HOM05D003086 ORTHO05D003347 2.6e-07 58.5 35 71.4
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 3.4e-07 58.2 61 49.2
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 3.4e-07 58.2 61 45.9
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 5.8e-07 57.4 53 50.9
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 5.8e-07 57.4 53 50.9
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 5.8e-07 57.4 53 50.9
CAN.G481.40 Capsicum annuum HOM05D003086 ORTHO05D003347 7.5e-07 57.0 64 56.2
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 1.3e-06 56.2 60 46.7
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 1.3e-06 56.2 66 43.9
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 1.7e-06 55.8 53 49.1
Cc02_g01250 Coffea canephora HOM05D003086 ORTHO05D003347 1.7e-06 55.8 58 62.1
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 1.7e-06 55.8 39 64.1
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 2.2e-06 55.5 56 48.2
COL.COLO4_16806 Corchorus olitorius HOM05D003086 ORTHO05D003347 2.2e-06 55.5 59 50.8
DCAR_022130 Daucus carota HOM05D003086 ORTHO05D003347 2.2e-06 55.5 38 57.9
Lalb_Chr04g0254361 Lupinus albus HOM05D003086 ORTHO05D003347 2.2e-06 55.5 42 54.8
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 2.2e-06 55.5 53 49.1
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 2.2e-06 55.5 61 49.2
Gorai.012G097900 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.9e-06 55.1 33 69.7
SalBow3G3175 Salvia bowleyana HOM05D003086 ORTHO05D003347 2.9e-06 55.1 60 48.3
BcaB01g02737 Brassica carinata HOM05D003086 ORTHO05D003347 3.7e-06 54.7 57 57.9
BcaC01g04661 Brassica carinata HOM05D003086 ORTHO05D003347 3.7e-06 54.7 57 57.9
C03p35200 Brassica napus HOM05D003086 ORTHO05D003347 3.7e-06 54.7 57 57.9
BolC3t15831H Brassica oleracea HOM05D003086 ORTHO05D003347 3.7e-06 54.7 57 57.9
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 3.7e-06 54.7 61 47.5
Sabra14G0073900 Salix brachista HOM05D003086 ORTHO05D003347 3.7e-06 54.7 56 48.2
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 4.9e-06 54.3 57 49.1
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 4.9e-06 54.3 57 49.1
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 4.9e-06 54.3 57 49.1
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 4.9e-06 54.3 57 49.1
Peaxi162Scf00740g00215 Petunia axillaris HOM05D003086 ORTHO05D003347 4.9e-06 54.3 64 56.2
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 6.4e-06 53.9 52 48.1
Os10g0502100 Oryza sativa ssp. japonica HOM05D003086 ORTHO05D003347 6.4e-06 53.9 69 39.1
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 8.3e-06 53.5 52 57.7
Thecc.03G202500 Theobroma cacao HOM05D003086 ORTHO05D003347 8.3e-06 53.5 59 50.8


User provided reference genes

Program Settings