Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 9.8e-289 996.1 510 100.0
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 7.0e-279 963.4 510 96.7
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 1.1e-263 912.9 512 92.6
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 2.0e-196 689.5 504 72.4
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 4.9e-163 578.6 508 62.6
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.0e-160 570.9 513 61.2
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 5.7e-156 555.1 515 60.2
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.2e-148 530.8 513 59.3
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 6.6e-144 515.0 514 57.6
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 4.6e-129 465.7 511 54.6
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 2.1e-126 456.8 518 51.4
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 3.2e-122 443.0 510 51.0
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 1.6e-118 430.6 516 50.2
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 1.3e-115 421.0 524 49.8
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 4.9e-115 419.1 517 48.9
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.3e-110 404.4 519 47.4
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 4.8e-110 402.5 507 46.9
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.6e-108 396.7 476 52.3
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 1.3e-107 394.4 504 47.4
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 3.2e-106 389.8 524 44.8
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 3.5e-105 386.3 522 46.2
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 5.6e-103 379.0 504 45.8
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 3.7e-102 376.3 508 45.5
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 1.8e-101 374.0 506 47.4
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 2.6e-100 370.2 504 46.0
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 3.8e-99 366.3 517 45.1
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 2.5e-98 363.6 519 44.9
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 5.5e-98 362.5 495 45.7
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 3.5e-97 359.8 517 44.9
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 5.1e-96 355.9 505 44.8
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 1.1e-95 354.8 526 44.1
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 1.1e-95 354.8 508 44.1
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 2.5e-95 353.6 518 43.2
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 5.7e-95 352.4 512 44.3
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 4.1e-93 346.3 506 45.1
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 9.0e-93 345.1 512 43.2
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 9.0e-93 345.1 519 43.0
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 1.2e-92 344.7 528 41.9
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 5.9e-92 342.4 539 44.0
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 7.7e-92 342.0 532 41.4
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 1.0e-91 341.7 490 46.3
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 1.0e-91 341.7 512 43.8
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 2.9e-91 340.1 527 42.5
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 3.8e-91 339.7 515 42.7
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 8.5e-91 338.6 523 43.4
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 7.2e-90 335.5 519 42.6
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 9.4e-90 335.1 508 43.3
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 1.2e-89 334.7 628 38.2
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 2.1e-89 334.0 516 43.8
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 2.7e-89 333.6 556 41.0
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 4.6e-89 332.8 512 43.9
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 6.1e-89 332.4 514 43.6
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 1.8e-88 330.9 509 43.4
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 3.0e-88 330.1 520 42.3
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 1.9e-87 327.4 524 42.0
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 4.3e-87 326.2 554 40.8
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 9.7e-87 325.1 502 41.6
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 1.7e-86 324.3 526 41.6
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 2.2e-86 323.9 515 41.7
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 2.8e-86 323.6 532 41.9
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 4.8e-86 322.8 515 42.1
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 6.3e-86 322.4 525 42.9
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 6.9e-85 318.9 518 43.1
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 5.9e-84 315.8 551 38.8
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 3.8e-83 313.2 371 51.2
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 6.5e-83 312.4 282 57.8
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 6.5e-83 312.4 295 58.6
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 5.5e-82 309.3 533 40.3
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 2.7e-81 307.0 526 39.4
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 1.1e-79 301.6 515 40.0
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.4e-77 293.9 542 39.7
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 4.1e-77 293.1 542 39.7
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.1e-77 293.1 542 39.7
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 5.3e-77 292.7 542 39.5
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 9.1e-77 292.0 510 38.8
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 3.4e-76 290.0 548 38.9
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.7e-75 287.7 508 39.6
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 1.6e-73 281.2 515 39.2
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 1.8e-72 277.7 504 37.1
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 3.0e-72 276.9 496 38.9
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 8.8e-72 275.4 524 38.9
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 4.4e-71 273.1 337 47.8
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 9.7e-71 271.9 305 50.2
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 9.7e-71 271.9 288 52.8
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 1.3e-70 271.6 396 42.9
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 4.8e-70 269.6 289 51.9
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 4.8e-70 269.6 509 37.1
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 8.2e-70 268.9 290 53.1
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 8.2e-70 268.9 289 51.9
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 1.1e-69 268.5 289 52.6
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 1.1e-69 268.5 289 51.9
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 1.1e-69 268.5 289 51.9
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 1.1e-69 268.5 289 51.9
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 1.1e-69 268.5 289 51.6
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 5.3e-69 266.2 383 44.1
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 1.6e-68 264.6 302 49.7
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 3.5e-68 263.5 290 51.4
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 4.5e-68 263.1 507 38.7
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 5.9e-68 262.7 296 51.4
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 5.9e-68 262.7 296 51.4
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 5.9e-68 262.7 296 51.4
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 1.0e-67 261.9 503 35.2
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 1.0e-64 251.9 364 44.0
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 2.3e-64 250.8 379 44.6
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 2.3e-64 250.8 480 38.3
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 6.7e-64 249.2 291 47.8
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.0e-63 247.7 542 36.5
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 5.7e-63 246.1 226 57.5
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 3.6e-57 226.9 276 46.4
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 3.0e-56 223.8 527 36.6
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 1.3e-54 218.4 352 40.1
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 1.7e-54 218.0 279 46.6
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 3.7e-54 216.9 432 38.4
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 4.8e-54 216.5 269 45.7
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 1.1e-53 215.3 288 43.8
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.4e-53 214.9 269 45.4
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 1.8e-53 214.5 278 49.3
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 1.8e-53 214.5 520 34.8
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.1e-53 213.4 269 45.4
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 1.6e-52 211.5 266 46.2
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 5.5e-50 203.0 269 45.0
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 2.0e-47 194.5 287 40.8
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 4.4e-47 193.4 193 58.5
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 6.6e-43 179.5 425 35.8
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 3.3e-42 177.2 286 42.3
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 4.7e-41 173.3 380 34.5
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 6.4e-38 162.9 367 37.3
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 1.6e-36 158.3 124 61.3
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 8.6e-35 152.5 157 55.4
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.4e-32 145.2 279 35.5
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 2.0e-31 141.4 163 46.0
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 1.7e-30 138.3 124 52.4
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 1.2e-28 132.1 100 63.0
Actinidia10067 Actinidia chinensis HOM05D004687 ORTHO05D006002 1.5e-23 115.2 392 31.6
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.5e-23 115.2 364 33.2
CBR_g45680 Chara braunii HOM05D004687 ORTHO05D006002 3.2e-21 107.5 282 26.6
COL.COLO4_21921 Corchorus olitorius HOM05D004687 ORTHO05D006002 1.7e-19 101.7 119 43.7
PSO541G1518 Papaver somniferum HOM05D004687 ORTHO05D006002 2.3e-19 101.3 164 36.6
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 1.1e-18 99.0 100 54.0
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 2.8e-17 94.4 134 47.0
Mapoly0091s0017 Marchantia polymorpha HOM05D004687 ORTHO05D006002 9.2e-13 79.3 291 25.4
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 9.2e-13 79.3 123 42.3
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 1.6e-12 78.6 130 39.2
Ca_03421_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 2.7e-12 77.8 125 41.6
vmacro13233 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 4.3e-10 70.5 51 58.8


User provided reference genes

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