Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g027970 Solanum pennellii HOM05D003988 ORTHO05D004688 3.2e-145 518.5 276 100.0
Sopen03g038290 Solanum pennellii HOM05D003988 ORTHO05D004688 2.8e-141 505.4 273 93.8
Solyc03g119440.3 Solanum lycopersicum HOM05D003988 ORTHO05D004688 2.4e-140 502.3 273 93.4
PGSC0003DMG400005722 Solanum tuberosum HOM05D003988 ORTHO05D004688 7.2e-137 490.7 273 91.2
CAN.G1889.6 Capsicum annuum HOM05D003988 ORTHO05D004688 3.1e-132 475.3 273 87.2
Nitab4.5_0002906g0030 Nicotiana tabacum HOM05D003988 ORTHO05D004688 1.1e-129 466.8 273 85.3
Nitab4.5_0009306g0030 Nicotiana tabacum HOM05D003988 ORTHO05D004688 1.6e-128 463.0 273 84.6
Dinv15683 Davidia involucrata HOM05D003988 ORTHO05D004688 5.0e-106 388.3 272 67.6
GSVIVG01008297001 Vitis vinifera HOM05D003988 ORTHO05D004688 8.6e-106 387.5 269 68.4
Peaxi162Scf00015g01040 Petunia axillaris HOM05D003988 ORTHO05D004688 7.3e-105 384.4 273 72.2
Actinidia35091 Actinidia chinensis HOM05D003988 ORTHO05D004688 9.5e-105 384.0 272 67.6
FAN04G0415 Fragaria x ananassa HOM05D003988 ORTHO05D004688 4.7e-104 381.7 273 67.8
FvH4_5g12040 Fragaria vesca HOM05D003988 ORTHO05D004688 6.2e-104 381.3 273 67.4
Hma1.2p1_0653F.1_g196250 Hydrangea macrophylla HOM05D003988 ORTHO05D004688 6.2e-104 381.3 270 67.0
FAN18G4152 Fragaria x ananassa HOM05D003988 ORTHO05D004688 1.1e-103 380.6 273 67.4
FAN18G4386 Fragaria x ananassa HOM05D003988 ORTHO05D004688 1.1e-103 380.6 273 67.4
Rhsim12G0143000 Rhododendron simsii HOM05D003988 ORTHO05D004688 1.1e-103 380.6 270 67.4
Dinv28109 Davidia involucrata HOM05D003988 ORTHO05D004688 2.3e-103 379.4 258 71.7
COL.COLO4_32832 Corchorus olitorius HOM05D003988 ORTHO05D004688 4.0e-103 378.6 273 64.5
DCAR_023207 Daucus carota HOM05D003988 ORTHO05D004688 5.2e-103 378.3 270 66.7
FAN13G2567 Fragaria x ananassa HOM05D003988 ORTHO05D004688 6.8e-103 377.9 277 66.8
RcHm_v2.0_Chr7g0185511 Rosa chinensis HOM05D003988 ORTHO05D004688 1.2e-102 377.1 273 67.0
Actinidia18930 Actinidia chinensis HOM05D003988 ORTHO05D004688 2.6e-102 375.9 272 66.2
Cc04_g07060 Coffea canephora HOM05D003988 ORTHO05D004688 3.4e-102 375.6 271 66.1
Lsat_1_v5_gn_8_146920 Lactuca sativa HOM05D003988 ORTHO05D004688 3.4e-102 375.6 271 65.3
vmacro16441 Vaccinium macrocarpon HOM05D003988 ORTHO05D004688 1.3e-101 373.6 270 65.6
Prupe.5G221900 Prunus persica HOM05D003988 ORTHO05D004688 1.7e-101 373.2 272 64.0
Duzib205G1863 Durio zibethinus HOM05D003988 ORTHO05D004688 1.4e-100 370.2 270 63.7
Potri.012G056000 Populus trichocarpa HOM05D003988 ORTHO05D004688 3.2e-100 369.0 270 64.8
MD06G1216700 Malus domestica HOM05D003988 ORTHO05D004688 7.0e-100 367.9 270 63.3
CiPaw.16G086900 Carya illinoinensis HOM05D003988 ORTHO05D004688 9.2e-100 367.5 270 64.8
Manes.05G113166 Manihot esculenta HOM05D003988 ORTHO05D004688 9.2e-100 367.5 273 64.8
Cfa019762 Carpinus fangiana HOM05D003988 ORTHO05D004688 2.0e-99 366.3 271 64.6
Rhsim08G0133900 Rhododendron simsii HOM05D003988 ORTHO05D004688 2.0e-99 366.3 262 66.4
TWI81G0944 Tripterygium wilfordii HOM05D003988 ORTHO05D004688 2.0e-99 366.3 271 64.6
Thecc.03G036400 Theobroma cacao HOM05D003988 ORTHO05D004688 2.7e-99 365.9 270 63.3
MD14G1227200 Malus domestica HOM05D003988 ORTHO05D004688 4.6e-99 365.2 272 62.5
Oeu064716.1 Olea europaea HOM05D003988 ORTHO05D004688 4.6e-99 365.2 270 65.6
CANSAT80G2599 Cannabis sativa HOM05D003988 ORTHO05D004688 1.0e-98 364.0 273 62.6
DCAR_011356 Daucus carota HOM05D003988 ORTHO05D004688 1.7e-98 363.2 269 63.6
FAN08G2998 Fragaria x ananassa HOM05D003988 ORTHO05D004688 2.3e-98 362.8 291 62.9
TAR629G2028 Trochodendron aralioides HOM05D003988 ORTHO05D004688 2.3e-98 362.8 269 64.3
Lj5C149G16 Lonicera japonica HOM05D003988 ORTHO05D004688 3.0e-98 362.5 270 64.8
CSS0009918 Camellia sinensis var. sinensis HOM05D003988 ORTHO05D004688 8.6e-98 360.9 272 61.0
PGR044G0911 Punica granatum HOM05D003988 ORTHO05D004688 2.5e-97 359.4 270 62.2
QL10p025473 Quercus lobata HOM05D003988 ORTHO05D004688 2.5e-97 359.4 270 63.7
Atru.chr9.851 Acer truncatum HOM05D003988 ORTHO05D004688 3.3e-97 359.0 270 62.2
Gohir.A12G266600 Gossypium hirsutum HOM05D003988 ORTHO05D004688 4.3e-97 358.6 273 61.5
Eucgr.K02227 Eucalyptus grandis HOM05D003988 ORTHO05D004688 7.3e-97 357.8 270 63.3
Migut.A00873 Erythranthe guttata HOM05D003988 ORTHO05D004688 9.5e-97 357.5 270 62.6
HanXRQChr08g0226051 Helianthus annuus HOM05D003988 ORTHO05D004688 2.1e-96 356.3 272 61.8
Sed0017030 Sechium edule HOM05D003988 ORTHO05D004688 4.7e-96 355.1 259 64.5
TWI15G0963 Tripterygium wilfordii HOM05D003988 ORTHO05D004688 6.2e-96 354.8 271 62.7
CsaV3_1G006640 Cucumis sativus L. HOM05D003988 ORTHO05D004688 1.8e-95 353.2 259 63.3
CSS0004736 Camellia sinensis var. sinensis HOM05D003988 ORTHO05D004688 3.1e-95 352.4 272 63.6
MELO3C017311.2 Cucumis melo HOM05D003988 ORTHO05D004688 4.0e-95 352.1 264 62.9
CsaV3_1G003870 Cucumis sativus L. HOM05D003988 ORTHO05D004688 5.2e-95 351.7 272 61.0
Sed0007612 Sechium edule HOM05D003988 ORTHO05D004688 5.2e-95 351.7 263 63.1
MSTRG.25559 Avicennia marina HOM05D003988 ORTHO05D004688 8.9e-95 350.9 270 62.6
Ciclev10018856m.g Citrus clementina HOM05D003988 ORTHO05D004688 3.4e-94 349.0 270 61.1
CiPaw.15G131300 Carya illinoinensis HOM05D003988 ORTHO05D004688 4.4e-94 348.6 271 63.5
Duzib068G0062 Durio zibethinus HOM05D003988 ORTHO05D004688 6.4e-93 344.7 270 60.4
Ca_25488_v3 Cicer arietinum L. HOM05D003988 ORTHO05D004688 8.3e-93 344.4 272 58.1
Glyma.07G092400 Glycine max HOM05D003988 ORTHO05D004688 1.1e-92 344.0 273 59.7
Glyma.09G183800 Glycine max HOM05D003988 ORTHO05D004688 1.4e-92 343.6 273 59.3
ECA233G4392 Erigeron canadensis HOM05D003988 ORTHO05D004688 4.1e-92 342.0 252 64.3
Lalb_Chr14g0371121 Lupinus albus HOM05D003988 ORTHO05D004688 9.2e-92 340.9 274 58.8
Medtr6g084400 Medicago truncatula HOM05D003988 ORTHO05D004688 1.2e-91 340.5 274 59.5
ClCG06G014770 Citrullus lanatus HOM05D003988 ORTHO05D004688 2.1e-91 339.7 307 54.7
TPR.G15165 Trifolium pratense HOM05D003988 ORTHO05D004688 2.1e-91 339.7 274 59.5
VMungo0464G1409 Vigna mungo HOM05D003988 ORTHO05D004688 3.5e-91 339.0 273 58.6
Phvul.004G156400 Phaseolus vulgaris HOM05D003988 ORTHO05D004688 7.8e-91 337.8 273 58.6
Gohir.D12G267000 Gossypium hirsutum HOM05D003988 ORTHO05D004688 1.7e-90 336.7 273 59.0
Gorai.008G287000 Gossypium raimondii HOM05D003988 ORTHO05D004688 1.7e-90 336.7 273 59.0
ATR1125G120 Amborella trichopoda HOM05D003988 ORTHO05D004688 3.0e-90 335.9 260 59.2
Psat1g037240 Pisum sativum HOM05D003988 ORTHO05D004688 5.1e-90 335.1 274 58.8
Hund02386 Selenicereus undatus HOM05D003988 ORTHO05D004688 5.1e-90 335.1 294 56.5
AUR62025848 Chenopodium quinoa HOM05D003988 ORTHO05D004688 1.1e-89 334.0 271 58.7
MSTRG.12041 Avicennia marina HOM05D003988 ORTHO05D004688 5.6e-89 331.6 270 60.0
Aqoxy3G00281 Aquilegia oxysepala HOM05D003988 ORTHO05D004688 9.5e-89 330.9 261 58.2
Zm00001eb125450 Zea mays HOM05D003988 ORTHO05D004688 6.2e-88 328.2 273 57.5
Lalb_Chr22g0353111 Lupinus albus HOM05D003988 ORTHO05D004688 8.1e-88 327.8 272 56.2
THA.LOC104820392 Tarenaya hassleriana HOM05D003988 ORTHO05D004688 1.1e-87 327.4 271 57.2
PSO017G3983 Papaver somniferum HOM05D003988 ORTHO05D004688 8.9e-87 324.3 269 57.2
PSO478G1317 Papaver somniferum HOM05D003988 ORTHO05D004688 1.5e-86 323.6 269 57.2
Lj2g0015725 Lotus japonicus HOM05D003988 ORTHO05D004688 4.4e-86 322.0 275 54.5
ClCG04G011120 Citrullus lanatus HOM05D003988 ORTHO05D004688 2.9e-85 319.3 330 50.0
EL10Ac5g11452 Beta vulgaris HOM05D003988 ORTHO05D004688 3.8e-85 318.9 268 57.8
Nn4g23862 Nelumbo nucifera HOM05D003988 ORTHO05D004688 3.8e-85 318.9 262 58.8
AL3G31660 Arabidopsis lyrata HOM05D003988 ORTHO05D004688 1.4e-84 317.0 269 57.2
Sc04g0003480 Simmondsia chinensis HOM05D003988 ORTHO05D004688 1.4e-84 317.0 270 57.4
Carub.0003s1815 Capsella rubella HOM05D003988 ORTHO05D004688 1.9e-84 316.6 269 56.9
Psat1g038080 Pisum sativum HOM05D003988 ORTHO05D004688 1.9e-84 316.6 274 56.6
Thhalv10020065m.g Eutrema salsugineum HOM05D003988 ORTHO05D004688 5.4e-84 315.1 274 56.9
AT3G18370 Arabidopsis thaliana HOM05D003988 ORTHO05D004688 7.1e-84 314.7 269 56.5
A05p31310 Brassica napus HOM05D003988 ORTHO05D004688 1.2e-83 313.9 274 56.9
BcaB06g25881 Brassica carinata HOM05D003988 ORTHO05D004688 2.1e-83 313.2 274 56.6
BraA05t21969Z Brassica rapa HOM05D003988 ORTHO05D004688 2.7e-83 312.8 274 56.6
BcaC05g28634 Brassica carinata HOM05D003988 ORTHO05D004688 3.5e-83 312.4 274 56.6
C05p47400 Brassica napus HOM05D003988 ORTHO05D004688 3.5e-83 312.4 274 56.6
BolC5t33466H Brassica oleracea HOM05D003988 ORTHO05D004688 3.5e-83 312.4 274 56.6
HPP92_000179 Vanilla planifolia HOM05D003988 ORTHO05D004688 6.0e-83 311.6 270 54.8
Ah.11g045100 Amaranthus hybridus HOM05D003988 ORTHO05D004688 1.0e-82 310.8 249 59.4
vmacro17712 Vaccinium macrocarpon HOM05D003988 ORTHO05D004688 1.0e-82 310.8 298 55.0
CARHR093720 Cardamine hirsuta HOM05D003988 ORTHO05D004688 1.1e-81 307.4 269 55.4
SalBow1G3470 Salvia bowleyana HOM05D003988 ORTHO05D004688 1.9e-81 306.6 264 56.4
SalBow1G4660 Salvia bowleyana HOM05D003988 ORTHO05D004688 1.9e-81 306.6 264 56.4
SGA_v2.0_scaffold146G36202 Striga asiatica HOM05D003988 ORTHO05D004688 7.3e-81 304.7 267 58.8
Sp3g16480 Schrenkiella parvula HOM05D003988 ORTHO05D004688 1.2e-80 303.9 274 55.5
Sabra15G0039000 Salix brachista HOM05D003988 ORTHO05D004688 2.4e-79 299.7 347 47.3
Glyma.08G041800 Glycine max HOM05D003988 ORTHO05D004688 4.0e-79 298.9 259 54.8
Psat7g010800 Pisum sativum HOM05D003988 ORTHO05D004688 7.6e-78 294.7 239 57.3
VMungo0251G2522 Vigna mungo HOM05D003988 ORTHO05D004688 3.8e-77 292.4 276 51.4
Medtr8g104330 Medicago truncatula HOM05D003988 ORTHO05D004688 3.2e-76 289.3 236 57.6
Aa31LG8G5200 Aethionema arabicum HOM05D003988 ORTHO05D004688 9.3e-76 287.7 269 53.2
Ca_25441_v3 Cicer arietinum L. HOM05D003988 ORTHO05D004688 1.6e-75 287.0 249 55.0
SalBow6G4224 Salvia bowleyana HOM05D003988 ORTHO05D004688 4.6e-75 285.4 242 55.8
arahy.Tifrunner.gnm1.ann1.A1L0XC Arachis hypogaea HOM05D003988 ORTHO05D004688 2.3e-74 283.1 247 55.1
arahy.Tifrunner.gnm1.ann1.XMAM92 Arachis hypogaea HOM05D003988 ORTHO05D004688 6.6e-74 281.6 270 51.9
MELO3C002088.2 Cucumis melo HOM05D003988 ORTHO05D004688 1.1e-73 280.8 320 47.5
Phvul.002G316700 Phaseolus vulgaris HOM05D003988 ORTHO05D004688 2.5e-73 279.6 273 49.8
Mapoly0126s0037 Marchantia polymorpha HOM05D003988 ORTHO05D004688 3.6e-72 275.8 261 50.2
Lalb_Chr24g0397841 Lupinus albus HOM05D003988 ORTHO05D004688 1.8e-71 273.5 209 60.3
Os01g0128800 Oryza sativa ssp. japonica HOM05D003988 ORTHO05D004688 1.5e-70 270.4 206 55.8
Pp3c15_17330 Physcomitrium patens HOM05D003988 ORTHO05D004688 2.0e-70 270.0 270 46.7
SMO117G0174 Selaginella moellendorffii HOM05D003988 ORTHO05D004688 2.6e-70 269.6 252 50.4
arahy.Tifrunner.gnm1.ann1.1BPS4M Arachis hypogaea HOM05D003988 ORTHO05D004688 9.9e-70 267.7 274 49.6
arahy.Tifrunner.gnm1.ann1.41MGIJ Arachis hypogaea HOM05D003988 ORTHO05D004688 1.3e-69 267.3 274 49.6
Pp3c9_20840 Physcomitrium patens HOM05D003988 ORTHO05D004688 3.8e-69 265.8 272 46.7
GSVIVG01031025001 Vitis vinifera HOM05D003988 ORTHO05D004688 1.1e-68 264.2 201 62.2
Haze_18685 Corylus avellana HOM05D003988 ORTHO05D004688 6.0e-67 258.5 184 69.0
CSS0041631 Camellia sinensis var. sinensis HOM05D003988 ORTHO05D004688 1.3e-66 257.3 183 68.3
unitig_699.g19756 Utricularia gibba HOM05D003988 ORTHO05D004688 1.1e-65 254.2 255 49.4
CDE12G0686 Ceratophyllum demersum HOM05D003988 ORTHO05D004688 7.4e-65 251.5 261 49.0
Cpa.g.sc3.506 Carica papaya HOM05D003988 ORTHO05D004688 4.2e-60 235.7 273 47.6
Psat1g126120 Pisum sativum HOM05D003988 ORTHO05D004688 4.9e-53 212.2 150 64.0
Nn3g17861 Nelumbo nucifera HOM05D003988 ORTHO05D004688 3.1e-47 193.0 262 38.9
AagrBONN_evm.TU.Sc2ySwM_344.3810 Anthoceros agrestis HOM05D003988 ORTHO05D004688 4.1e-47 192.6 212 45.3
AagrBONN_evm.TU.Sc2ySwM_344.3647 Anthoceros agrestis HOM05D003988 ORTHO05D004688 6.1e-27 125.6 138 47.1
AUR62029869 Chenopodium quinoa HOM05D003988 ORTHO05D004688 1.8e-26 124.0 271 31.0
Hund10252 Selenicereus undatus HOM05D003988 ORTHO05D004688 1.8e-26 124.0 107 58.9
CBR_g27919 Chara braunii HOM05D003988 ORTHO05D011373 2.8e-24 116.7 154 40.9
arahy.Tifrunner.gnm1.ann1.GXR4QA Arachis hypogaea HOM05D003988 ORTHO05D004688 6.3e-24 115.5 107 51.4
arahy.Tifrunner.gnm1.ann1.SX57NQ Arachis hypogaea HOM05D003988 ORTHO05D014448 4.7e-19 99.4 74 59.5
CBR_g27924 Chara braunii HOM05D003988 ORTHO05D004688 1.2e-14 84.7 70 51.4
CBR_g58829 Chara braunii HOM05D001692 ORTHO05D003541 5.2e-10 69.3 253 24.1
arahy.Tifrunner.gnm1.ann1.SQZX99 Arachis hypogaea HOM05D003988 ORTHO05D004688 3.4e-09 66.6 52 55.8
AagrBONN_evm.TU.Sc2ySwM_344.3648 Anthoceros agrestis HOM05D003988 ORTHO05D004688 4.4e-09 66.2 70 37.1
arahy.Tifrunner.gnm1.ann1.30R83I Arachis hypogaea HOM05D000501 ORTHO05D000376 2.8e-08 63.5 64 46.9
Lalb_Chr24g0397831 Lupinus albus HOM05D003988 ORTHO05D004688 2.8e-08 63.5 64 48.4
EL10Ac6g13844 Beta vulgaris HOM05D001947 ORTHO05D004688 3.1e-07 60.1 90 40.0
EL10Ac3g06158 Beta vulgaris HOM05D000730 ORTHO05D004688 5.4e-07 59.3 91 39.6
CSS0012342 Camellia sinensis var. sinensis HOM05D024952 ORTHO05D004688 5.4e-07 59.3 64 45.3
CSS0012683 Camellia sinensis var. sinensis HOM05D024952 ORTHO05D004688 5.4e-07 59.3 64 46.9
CSS0042318 Camellia sinensis var. sinensis HOM05D024952 ORTHO05D004688 5.4e-07 59.3 64 45.3
SEGI_10942 Sequoiadendron giganteum HOM05D003988 ORTHO05D004688 2.7e-06 57.0 61 50.8
arahy.Tifrunner.gnm1.ann1.G2QLGI Arachis hypogaea HOM05D003988 ORTHO05D004688 3.5e-06 56.6 66 47.0
CSS0016850 Camellia sinensis var. sinensis HOM05D024952 ORTHO05D004688 4.5e-06 56.2 64 43.8


User provided reference genes

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