Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g027620 Solanum pennellii HOM05D003698 ORTHO05D004320 1.7e-137 492.7 241 100.0
Solyc05g046340.2 Solanum lycopersicum HOM05D003698 ORTHO05D004320 6.3e-129 464.2 253 91.3
PGSC0003DMG400013702 Solanum tuberosum HOM05D003698 ORTHO05D004320 1.6e-127 459.5 250 91.2
PGSC0003DMG400021636 Solanum tuberosum HOM05D003698 ORTHO05D004320 4.8e-121 438.0 251 86.1
Sopen08g004500 Solanum pennellii HOM05D003698 ORTHO05D004320 1.8e-120 436.0 251 85.7
Solyc05g048760.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 3.1e-120 435.3 251 85.3
Solyc08g008670.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 5.4e-120 434.5 251 85.3
Sopen05g028080 Solanum pennellii HOM05D003698 ORTHO05D004320 9.1e-120 433.7 251 84.9
Nitab4.5_0010110g0030 Nicotiana tabacum HOM05D003698 ORTHO05D004320 8.5e-118 427.2 251 84.1
Nitab4.5_0010827g0020 Nicotiana tabacum HOM05D003698 ORTHO05D004320 9.4e-117 423.7 251 82.9
Nitab4.5_0001702g0210 Nicotiana tabacum HOM05D003698 ORTHO05D004320 3.6e-116 421.8 253 83.0
Peaxi162Scf00397g00424 Petunia axillaris HOM05D003698 ORTHO05D004320 8.0e-116 420.6 251 82.1
arahy.Tifrunner.gnm1.ann1.51RIH8 Arachis hypogaea HOM05D003698 ORTHO05D004320 5.4e-112 407.9 244 82.0
CSS0014093 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 5.4e-112 407.9 247 80.6
Potri.014G080500 Populus trichocarpa HOM05D003698 ORTHO05D004320 5.4e-112 407.9 245 81.6
arahy.Tifrunner.gnm1.ann1.L2MSK1 Arachis hypogaea HOM05D003698 ORTHO05D004320 1.6e-111 406.4 244 82.0
Gohir.D12G108800 Gossypium hirsutum HOM05D003698 ORTHO05D004320 7.7e-111 404.1 246 80.9
Thecc.01G363600 Theobroma cacao HOM05D003698 ORTHO05D004320 7.7e-111 404.1 244 81.6
Glyma.18G229800 Glycine max HOM05D003698 ORTHO05D004320 1.0e-110 403.7 244 81.6
Gohir.A12G104900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 1.3e-110 403.3 246 79.7
Gorai.008G117900 Gossypium raimondii HOM05D003698 ORTHO05D004320 1.3e-110 403.3 246 80.9
COL.COLO4_12672 Corchorus olitorius HOM05D003698 ORTHO05D004320 3.8e-110 401.7 246 80.5
VMungo1383G3090 Vigna mungo HOM05D003698 ORTHO05D004320 6.6e-110 401.0 244 79.9
Glyma.09G262400 Glycine max HOM05D003698 ORTHO05D004320 8.6e-110 400.6 244 80.3
Dinv43781 Davidia involucrata HOM05D003698 ORTHO05D004320 1.1e-109 400.2 247 79.8
Gorai.004G157100 Gossypium raimondii HOM05D003698 ORTHO05D004320 1.1e-109 400.2 246 80.1
Cfa003959 Carpinus fangiana HOM05D003698 ORTHO05D004320 1.5e-109 399.8 244 79.9
Peaxi162Scf00246g01118 Petunia axillaris HOM05D003698 ORTHO05D004320 1.5e-109 399.8 251 78.9
CiPaw.01G057600 Carya illinoinensis HOM05D003698 ORTHO05D004320 3.3e-109 398.7 244 79.9
Gohir.D08G151400 Gossypium hirsutum HOM05D003698 ORTHO05D004320 3.3e-109 398.7 246 79.7
GSVIVG01026838001 Vitis vinifera HOM05D003698 ORTHO05D004320 3.3e-109 398.7 249 77.9
Duzib133G0563 Durio zibethinus HOM05D003698 ORTHO05D004320 4.3e-109 398.3 246 80.5
Phvul.008G068100 Phaseolus vulgaris HOM05D003698 ORTHO05D004320 9.5e-109 397.1 244 79.5
Psat3g111000 Pisum sativum HOM05D003698 ORTHO05D004320 9.5e-109 397.1 244 79.5
Gohir.A08G129900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 1.6e-108 396.4 246 79.3
Lalb_Chr04g0256721 Lupinus albus HOM05D003698 ORTHO05D004320 1.6e-108 396.4 245 80.0
Medtr7g076670 Medicago truncatula HOM05D003698 ORTHO05D004320 1.6e-108 396.4 244 79.1
HanXRQChr06g0169891 Helianthus annuus HOM05D003698 ORTHO05D004320 2.1e-108 396.0 246 77.6
Lj1g0021860 Lotus japonicus HOM05D003698 ORTHO05D004320 2.1e-108 396.0 244 79.9
Dinv43783 Davidia involucrata HOM05D003698 ORTHO05D004320 2.8e-108 395.6 247 78.9
Prupe.2G162400 Prunus persica HOM05D003698 ORTHO05D004320 2.8e-108 395.6 246 78.0
Ca_07888_v3 Cicer arietinum L. HOM05D003698 ORTHO05D004320 8.0e-108 394.0 244 78.3
Dinv32446 Davidia involucrata HOM05D003698 ORTHO05D004320 8.0e-108 394.0 247 78.9
FvH4_7g13630 Fragaria vesca HOM05D003698 ORTHO05D004320 8.0e-108 394.0 246 76.8
FAN01G1997 Fragaria x ananassa HOM05D003698 ORTHO05D004320 8.0e-108 394.0 246 76.8
FAN06G0259 Fragaria x ananassa HOM05D003698 ORTHO05D004320 8.0e-108 394.0 246 76.8
Manes.05G037500 Manihot esculenta HOM05D003698 ORTHO05D004320 1.0e-107 393.7 244 78.7
Potri.014G080300 Populus trichocarpa HOM05D003698 ORTHO05D004320 1.0e-107 393.7 245 79.2
CANSAT56G2897 Cannabis sativa HOM05D003698 ORTHO05D004320 1.8e-107 392.9 244 77.5
Oeu014677.1 Olea europaea HOM05D003698 ORTHO05D004320 2.3e-107 392.5 250 76.8
RcHm_v2.0_Chr1g0353671 Rosa chinensis HOM05D003698 ORTHO05D004320 2.3e-107 392.5 247 76.5
Manes.01G259900 Manihot esculenta HOM05D003698 ORTHO05D004320 3.0e-107 392.1 244 78.7
Nn1g01429 Nelumbo nucifera HOM05D003698 ORTHO05D004320 3.0e-107 392.1 250 76.0
Actinidia09997 Actinidia chinensis HOM05D003698 ORTHO05D004320 4.0e-107 391.7 247 78.1
Eucgr.E00182 Eucalyptus grandis HOM05D003698 ORTHO05D004320 4.0e-107 391.7 248 77.8
Hma1.2p1_0033F.1_g020410 Hydrangea macrophylla HOM05D003698 ORTHO05D004320 4.0e-107 391.7 247 77.7
MSTRG.4868 Avicennia marina HOM05D003698 ORTHO05D004320 5.2e-107 391.3 246 77.6
MD01G1053400 Malus domestica HOM05D003698 ORTHO05D004320 6.8e-107 391.0 246 76.0
Rhsim07G0018200 Rhododendron simsii HOM05D003698 ORTHO05D004320 6.8e-107 391.0 247 78.1
QL08p049567 Quercus lobata HOM05D003698 ORTHO05D004320 2.0e-106 389.4 244 77.0
PSO478G0134 Papaver somniferum HOM05D003698 ORTHO05D004320 2.6e-106 389.0 247 75.7
Cc02_g37580 Coffea canephora HOM05D003698 ORTHO05D004320 3.4e-106 388.7 244 78.7
PSO782G3808 Papaver somniferum HOM05D003698 ORTHO05D004320 4.4e-106 388.3 247 75.7
TAR629G2702 Trochodendron aralioides HOM05D003698 ORTHO05D004320 4.4e-106 388.3 244 77.5
MD07G1141700 Malus domestica HOM05D003698 ORTHO05D004320 5.7e-106 387.9 246 76.0
Os04g0682300 Oryza sativa ssp. japonica HOM05D003698 ORTHO05D004320 5.7e-106 387.9 248 77.8
ECA236G4925 Erigeron canadensis HOM05D003698 ORTHO05D004320 7.5e-106 387.5 247 74.5
TWI59G0409 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 9.8e-106 387.1 247 76.1
PGR042G0708 Punica granatum HOM05D003698 ORTHO05D004320 1.3e-105 386.7 246 76.8
Zm00001eb065790 Zea mays HOM05D003698 ORTHO05D004320 1.3e-105 386.7 244 76.6
Sabra14G0058400 Salix brachista HOM05D003698 ORTHO05D004320 1.7e-105 386.3 240 78.8
AUR62036720 Chenopodium quinoa HOM05D003698 ORTHO05D004320 2.2e-105 386.0 246 74.8
Sed0025976 Sechium edule HOM05D003698 ORTHO05D004320 2.2e-105 386.0 245 76.7
TWI14G1008 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 3.7e-105 385.2 244 76.2
MELO3C026482.2 Cucumis melo HOM05D003698 ORTHO05D004320 6.4e-105 384.4 245 76.7
Atru.chr5.444 Acer truncatum HOM05D003698 ORTHO05D004320 1.1e-104 383.6 229 82.1
ClCG11G000500 Citrullus lanatus HOM05D003698 ORTHO05D004320 1.1e-104 383.6 245 76.3
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 1.1e-104 383.6 249 75.9
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 1.1e-104 383.6 286 69.6
Aa31LG1G27240 Aethionema arabicum HOM05D003698 ORTHO05D004320 1.4e-104 383.3 246 75.2
Aqoxy7G00375 Aquilegia oxysepala HOM05D003698 ORTHO05D004320 2.4e-104 382.5 244 76.2
MBI18_g09776_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 2.4e-104 382.5 290 67.9
TWI59G0439 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 4.1e-104 381.7 247 74.9
PGR044G0179 Punica granatum HOM05D003698 ORTHO05D004320 5.4e-104 381.3 246 76.4
SalBow5G4069 Salvia bowleyana HOM05D003698 ORTHO05D004320 5.4e-104 381.3 246 75.2
SGA_v2.0_scaffold11G05655 Striga asiatica HOM05D003698 ORTHO05D004320 5.4e-104 381.3 246 76.0
CDE05G2621 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 9.2e-104 380.6 247 74.5
CDE08G1212 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 9.2e-104 380.6 247 74.1
Hund16943 Selenicereus undatus HOM05D003698 ORTHO05D004320 9.2e-104 380.6 247 74.5
ATR0680G146 Amborella trichopoda HOM05D003698 ORTHO05D004320 3.5e-103 378.6 244 73.8
AL4G44990 Arabidopsis lyrata HOM05D003698 ORTHO05D004320 4.6e-103 378.3 246 74.8
BcaC01g05105 Brassica carinata HOM05D003698 ORTHO05D004320 7.8e-103 377.5 246 73.6
C03p30280 Brassica napus HOM05D003698 ORTHO05D004320 7.8e-103 377.5 246 73.6
BolC3t15377H Brassica oleracea HOM05D003698 ORTHO05D004320 7.8e-103 377.5 246 73.6
BraA03t11743Z Brassica rapa HOM05D003698 ORTHO05D004320 1.0e-102 377.1 246 73.2
Thhalv10001604m.g Eutrema salsugineum HOM05D003698 ORTHO05D004320 1.0e-102 377.1 246 73.6
A03p25370 Brassica napus HOM05D003698 ORTHO05D004320 2.3e-102 375.9 246 73.2
BcaB01g03252 Brassica carinata HOM05D003698 ORTHO05D004320 3.9e-102 375.2 244 73.8
Ciclev10024269m.g Citrus clementina HOM05D003698 ORTHO05D004320 3.9e-102 375.2 280 68.9
BcaB02g09006 Brassica carinata HOM05D003698 ORTHO05D004320 6.6e-102 374.4 246 73.2
THA.LOC104827595 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 6.6e-102 374.4 246 72.8
CARHR141060 Cardamine hirsuta HOM05D003698 ORTHO05D004320 1.5e-101 373.2 246 73.2
unitig_22.g6808 Utricularia gibba HOM05D003698 ORTHO05D004320 1.5e-101 373.2 246 74.4
AT2G45790 Arabidopsis thaliana HOM05D003698 ORTHO05D004320 1.9e-101 372.9 246 73.6
BcaC02g12181 Brassica carinata HOM05D003698 ORTHO05D004320 1.9e-101 372.9 246 72.8
A05p05780 Brassica napus HOM05D003698 ORTHO05D004320 2.5e-101 372.5 246 72.8
C04p06720 Brassica napus HOM05D003698 ORTHO05D004320 2.5e-101 372.5 246 72.8
BolC4t22293H Brassica oleracea HOM05D003698 ORTHO05D004320 2.5e-101 372.5 246 72.8
BraA05t19544Z Brassica rapa HOM05D003698 ORTHO05D004320 2.5e-101 372.5 246 72.8
Carub.0004s2849 Capsella rubella HOM05D003698 ORTHO05D004320 2.5e-101 372.5 246 73.2
THA.LOC104817282 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 2.5e-101 372.5 246 72.8
arahy.Tifrunner.gnm1.ann1.0R79PA Arachis hypogaea HOM05D003698 ORTHO05D004320 3.3e-101 372.1 222 81.5
CiPaw.02G028200 Carya illinoinensis HOM05D003698 ORTHO05D004320 3.3e-101 372.1 248 76.2
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 1.6e-100 369.8 231 77.5
Sp4g27860 Schrenkiella parvula HOM05D003698 ORTHO05D004320 2.1e-100 369.4 246 72.8
BraA04t18865Z Brassica rapa HOM05D003698 ORTHO05D004320 3.6e-100 368.6 246 72.0
A04p34040 Brassica napus HOM05D003698 ORTHO05D004320 4.7e-100 368.2 246 72.0
Ah.13g077050 Amaranthus hybridus HOM05D003698 ORTHO05D004320 2.3e-99 365.9 271 66.8
Mapoly0004s0121 Marchantia polymorpha HOM05D003698 ORTHO05D004320 2.3e-99 365.9 242 74.0
C04p71840 Brassica napus HOM05D003698 ORTHO05D004320 6.8e-99 364.4 244 71.7
BolC4t28682H Brassica oleracea HOM05D003698 ORTHO05D004320 6.8e-99 364.4 246 71.1
CsaV3_5G014110 Cucumis sativus L. HOM05D003698 ORTHO05D004320 1.5e-98 363.2 235 76.2
SGA_v2.0_scaffold43G16443 Striga asiatica HOM05D003698 ORTHO05D004320 2.0e-98 362.8 226 79.6
BcaC02g07054 Brassica carinata HOM05D003698 ORTHO05D004320 1.3e-97 360.1 243 71.2
CSS0039842 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 2.9e-97 359.0 251 74.1
PGSC0003DMG400005806 Solanum tuberosum HOM05D003698 ORTHO05D004320 3.7e-97 358.6 229 80.3
CSS0025539 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 4.9e-97 358.2 219 79.5
SMO367G1007 Selaginella moellendorffii HOM05D003698 ORTHO05D004320 8.3e-97 357.5 239 71.1
HanXRQChr04g0121661 Helianthus annuus HOM05D003698 ORTHO05D004320 2.4e-96 355.9 224 75.0
Pp3c23_11670 Physcomitrium patens HOM05D003698 ORTHO05D004320 4.1e-96 355.1 246 68.7
Cre14.g626900 Chlamydomonas reinhardtii HOM05D003698 ORTHO05D004320 2.7e-95 352.4 237 70.9
Oeu014681.1 Olea europaea HOM05D003698 ORTHO05D004320 1.7e-94 349.7 225 75.6
EL10Ac1g02076 Beta vulgaris HOM05D003698 ORTHO05D004320 4.3e-93 345.1 354 52.5
Lsat_1_v5_gn_7_5261 Lactuca sativa HOM05D003698 ORTHO05D004320 4.3e-93 345.1 243 70.0
SHI30460 Sapria himalayana HOM05D003698 ORTHO05D004320 4.7e-92 341.7 226 73.5
CBR_g44345 Chara braunii HOM05D003698 ORTHO05D004320 6.8e-91 337.8 241 67.6
CBR_g41657 Chara braunii HOM05D003698 ORTHO05D004320 1.2e-90 337.0 241 67.6
Lj7A516T66 Lonicera japonica HOM05D003698 ORTHO05D004320 2.6e-90 335.9 227 71.4
TWI59G0950 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 4.1e-88 328.6 212 75.9
CAN.G134.78 Capsicum annuum HOM05D003698 ORTHO05D004320 1.2e-87 327.0 189 83.1
SalBow5G5099 Salvia bowleyana HOM05D003698 ORTHO05D004320 3.5e-87 325.5 212 75.0
PRCOL_00001907 Prasinoderma coloniale HOM05D003698 ORTHO05D004320 1.5e-85 320.1 240 64.2
CBR_g4022 Chara braunii HOM05D003698 ORTHO05D004320 9.5e-85 317.4 246 58.9
MCO01G022 Micromonas commoda HOM05D003698 ORTHO05D004320 6.8e-83 311.2 237 60.8
DCAR_008599 Daucus carota HOM05D003698 ORTHO05D004320 5.8e-82 308.1 202 73.8
Eucgr.E00184 Eucalyptus grandis HOM05D003698 ORTHO05D004320 1.3e-81 307.0 186 78.0
AagrBONN_evm.TU.Sc2ySwM_117.907 Anthoceros agrestis HOM05D003698 ORTHO05D004320 1.1e-80 303.9 213 69.5
EL10Ac7g16340 Beta vulgaris HOM05D003698 ORTHO05D004320 1.4e-80 303.5 230 65.7
RhsimUnG0002300 Rhododendron simsii HOM05D003698 ORTHO05D004320 9.2e-80 300.8 300 56.3
Migut.N01427 Erythranthe guttata HOM05D003698 ORTHO05D004320 1.3e-78 297.0 200 75.5
Nn6g33536 Nelumbo nucifera HOM05D003698 ORTHO05D004320 9.9e-74 280.8 232 64.7
SEGI_40114 Sequoiadendron giganteum HOM05D003698 ORTHO05D004320 4.9e-73 278.5 164 79.3
Cpa.g.sc170.35 Carica papaya HOM05D003698 ORTHO05D004320 6.0e-71 271.6 148 83.8
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 2.3e-70 269.6 212 67.0
MSTRG.28213 Avicennia marina HOM05D003698 ORTHO05D004320 1.5e-69 266.9 183 75.4
Lj9A580G54 Lonicera japonica HOM05D003698 ORTHO05D004320 2.1e-68 263.1 154 77.3
AUR62013874 Chenopodium quinoa HOM05D003698 ORTHO05D004320 2.4e-67 259.6 211 62.6
Cfa027079 Carpinus fangiana HOM05D003698 ORTHO05D004320 5.3e-67 258.5 248 51.2
CSS0016921 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 1.2e-63 247.3 140 83.6
Haze_15453 Corylus avellana HOM05D003698 ORTHO05D004320 2.7e-63 246.1 153 77.8
Haze_05811 Corylus avellana HOM05D003698 ORTHO05D004320 1.7e-62 243.4 150 77.3
CSS0047600 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 2.4e-56 223.0 156 69.9
FAN06G0644 Fragaria x ananassa HOM05D003698 ORTHO05D004320 9.3e-56 221.1 151 72.8
HPP92_000764 Vanilla planifolia HOM05D003698 ORTHO05D004320 2.7e-55 219.5 214 58.4
FAN03G0966 Fragaria x ananassa HOM05D003698 ORTHO05D004320 4.6e-55 218.8 120 81.7
Cpa.g.c46781 Carica papaya HOM05D003698 ORTHO05D004320 2.1e-39 166.8 96 83.3
Prupe.8G033900 Prunus persica HOM05D003698 ORTHO05D004320 4.6e-39 165.6 89 83.1
Cpa.g.c40434 Carica papaya HOM05D003698 ORTHO05D004320 8.2e-36 154.8 116 70.7
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 7.9e-31 138.3 71 87.3
CANSAT25G0181 Cannabis sativa HOM05D003698 ORTHO05D004320 9.7e-29 131.3 69 81.2
RcHm_v2.0_Chr1g0364561 Rosa chinensis HOM05D003698 ORTHO05D004320 2.0e-26 123.6 87 72.4
TPR.G40455 Trifolium pratense HOM05D003698 ORTHO05D004320 4.5e-26 122.5 74 81.1
MBI17_g19515_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 7.2e-24 115.2 74 74.3
CAN.G134.80 Capsicum annuum HOM05D003698 ORTHO05D004320 1.1e-19 101.3 61 83.6
RcHm_v2.0_Chr4g0404481 Rosa chinensis HOM05D003698 ORTHO05D004320 5.3e-19 99.0 81 60.5
CANSAT11G2537 Cannabis sativa HOM05D003698 ORTHO05D004320 5.0e-17 92.4 44 84.1
RcHm_v2.0_Chr5g0045001 Rosa chinensis HOM05D003698 ORTHO05D004320 8.5e-17 91.7 85 57.6
TPR.G18261 Trifolium pratense HOM05D003698 ORTHO05D004320 9.4e-16 88.2 74 64.9
PGR044G1122 Punica granatum HOM05D003698 ORTHO05D004320 8.0e-15 85.1 104 50.0
ClCG03G012620 Citrullus lanatus HOM05D003698 ORTHO05D004320 1.6e-10 70.9 37 81.1
TPR.G42 Trifolium pratense HOM05D003698 ORTHO05D004320 1.0e-09 68.2 30 90.0
Hund27303 Selenicereus undatus HOM05D000402 ORTHO05D000263 1.1e-08 64.7 34 85.3
MBI17_g19513_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 1.5e-08 64.3 37 73.0
Haze_02709 Corylus avellana HOM05D050389 ORTHO05D165297 3.6e-07 59.7 38 76.3
Haze_05812 Corylus avellana HOM05D003698 ORTHO05D004320 4.7e-07 59.3 37 73.0
CSS0029944 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 1.0e-06 58.2 74 47.3


User provided reference genes

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