Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g027610 Solanum pennellii HOM05D003718 ORTHO05D004402 0.0e+00 1300.4 690 100.0
Solyc05g046330.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 0.0e+00 1271.5 690 98.0
CAN.G106.18 Capsicum annuum HOM05D003718 ORTHO05D004402 0.0e+00 1154.0 692 88.6
Sopen07g005600 Solanum pennellii HOM05D003718 ORTHO05D004402 1.1e-308 1062.8 690 80.6
Peaxi162Scf00320g00717 Petunia axillaris HOM05D003718 ORTHO05D004402 7.0e-306 1053.5 691 80.5
CAN.G54.7 Capsicum annuum HOM05D003718 ORTHO05D004402 3.1e-298 1028.1 690 78.1
Nitab4.5_0001572g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 2.6e-292 1008.4 690 77.8
Nitab4.5_0000413g0180 Nicotiana tabacum HOM05D003718 ORTHO05D004402 7.7e-289 996.9 690 77.5
Solyc07g014700.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 7.7e-289 996.9 647 80.8
Dinv34637 Davidia involucrata HOM05D003718 ORTHO05D004402 3.3e-287 991.5 692 74.3
Peaxi162Scf00906g00225 Petunia axillaris HOM05D003718 ORTHO05D004402 2.8e-283 978.4 672 79.3
CSS0049010 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 6.3e-283 977.2 692 75.0
Cc01_g18200 Coffea canephora HOM05D003718 ORTHO05D004402 1.8e-282 975.7 693 73.2
CSS0040480 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 4.1e-282 974.5 692 74.9
Actinidia07305 Actinidia chinensis HOM05D003718 ORTHO05D004402 3.5e-281 971.5 692 74.3
Hma1.2p1_0273F.1_g109540 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 2.3e-277 958.7 693 73.9
QL09p039591 Quercus lobata HOM05D003718 ORTHO05D004402 4.0e-277 958.0 706 71.1
Cfa013046 Carpinus fangiana HOM05D003718 ORTHO05D004402 2.4e-274 948.7 687 71.8
Migut.D00439 Erythranthe guttata HOM05D003718 ORTHO05D004402 4.1e-274 948.0 692 71.2
CiPaw.03G266000 Carya illinoinensis HOM05D003718 ORTHO05D004402 4.3e-271 937.9 689 70.8
Thecc.01G255900 Theobroma cacao HOM05D003718 ORTHO05D004402 2.3e-269 932.2 693 70.4
MSTRG.21485 Avicennia marina HOM05D003718 ORTHO05D004402 3.1e-269 931.8 692 69.7
Gohir.D07G156100 Gossypium hirsutum HOM05D003718 ORTHO05D004402 5.2e-269 931.0 690 69.9
CiPaw.04G187700 Carya illinoinensis HOM05D003718 ORTHO05D004402 9.8e-268 926.8 693 70.3
Duzib211G0290 Durio zibethinus HOM05D003718 ORTHO05D004402 9.8e-268 926.8 689 69.4
Gorai.001G179000 Gossypium raimondii HOM05D003718 ORTHO05D004402 1.3e-267 926.4 690 69.6
Gohir.A07G149800 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.2e-265 919.8 690 69.4
TAR633G0796 Trochodendron aralioides HOM05D003718 ORTHO05D004402 1.6e-265 919.5 692 69.2
CANSAT01G0671 Cannabis sativa HOM05D003718 ORTHO05D004402 2.1e-265 919.1 690 69.6
Duzib133G1085 Durio zibethinus HOM05D003718 ORTHO05D004402 1.3e-264 916.4 693 70.1
TWI75G1389 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 1.7e-264 916.0 689 69.4
Atru.chr5.1725 Acer truncatum HOM05D003718 ORTHO05D004402 2.3e-264 915.6 687 68.7
DCAR_000921 Daucus carota HOM05D003718 ORTHO05D004402 2.3e-264 915.6 692 69.2
Oeu052043.2 Olea europaea HOM05D003718 ORTHO05D004402 5.1e-264 914.4 800 62.8
MD05G1194900 Malus domestica HOM05D003718 ORTHO05D004402 1.1e-263 913.3 689 69.1
SalBow4G0483 Salvia bowleyana HOM05D003718 ORTHO05D004402 1.1e-263 913.3 711 67.4
Potri.002G036600 Populus trichocarpa HOM05D003718 ORTHO05D004402 2.1e-262 909.1 690 69.1
vmacro14814 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 2.8e-262 908.7 646 73.8
TWI12G1081 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 6.2e-262 907.5 688 68.9
GSVIVG01028357001 Vitis vinifera HOM05D003718 ORTHO05D004402 1.4e-261 906.4 686 68.8
Prupe.8G221600 Prunus persica HOM05D003718 ORTHO05D004402 3.1e-261 905.2 687 69.1
Manes.12G033700 Manihot esculenta HOM05D003718 ORTHO05D004402 9.9e-260 900.2 692 67.5
Potri.005G226100 Populus trichocarpa HOM05D003718 ORTHO05D004402 3.7e-259 898.3 690 68.0
Duzib138G1036 Durio zibethinus HOM05D003718 ORTHO05D004402 4.9e-259 897.9 687 68.1
Gohir.D11G137575 Gossypium hirsutum HOM05D003718 ORTHO05D004402 4.9e-259 897.9 689 67.9
Gorai.007G147600 Gossypium raimondii HOM05D003718 ORTHO05D004402 4.9e-259 897.9 689 67.8
Gohir.A11G131600 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.1e-258 896.7 689 68.4
Nitab4.5_0005411g0050 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.1e-258 896.7 650 75.8
MELO3C025537.2 Cucumis melo HOM05D003718 ORTHO05D004402 1.4e-258 896.3 686 67.9
Sabra05G0174600 Salix brachista HOM05D003718 ORTHO05D004402 1.9e-258 896.0 712 66.9
TAR362G0778 Trochodendron aralioides HOM05D003718 ORTHO05D004402 1.9e-258 896.0 694 68.7
CsaV3_1G015830 Cucumis sativus L. HOM05D003718 ORTHO05D004402 4.1e-258 894.8 686 67.3
RcHm_v2.0_Chr6g0287811 Rosa chinensis HOM05D003718 ORTHO05D004402 4.1e-258 894.8 691 69.3
ECA236G3831 Erigeron canadensis HOM05D003718 ORTHO05D004402 2.1e-257 892.5 693 68.3
FvH4_2g21250 Fragaria vesca HOM05D003718 ORTHO05D004402 4.6e-257 891.3 685 69.3
MD10G1181500 Malus domestica HOM05D003718 ORTHO05D004402 6.0e-257 891.0 694 67.7
Nn1g02814 Nelumbo nucifera HOM05D003718 ORTHO05D004402 1.3e-256 889.8 694 66.6
Ciclev10019124m.g Citrus clementina HOM05D003718 ORTHO05D004402 5.1e-256 887.9 688 67.2
Glyma.03G164400 Glycine max HOM05D003718 ORTHO05D004402 5.6e-255 884.4 686 67.8
Sed0001928 Sechium edule HOM05D003718 ORTHO05D004402 9.5e-255 883.6 686 66.8
FAN15G3248 Fragaria x ananassa HOM05D003718 ORTHO05D004402 3.6e-254 881.7 713 67.0
Sabra02G0029600 Salix brachista HOM05D003718 ORTHO05D004402 8.1e-254 880.6 728 65.2
Manes.13G035300 Manihot esculenta HOM05D003718 ORTHO05D004402 1.8e-253 879.4 698 67.0
HanXRQChr04g0110491 Helianthus annuus HOM05D003718 ORTHO05D004402 2.4e-253 879.0 644 69.9
Lsat_1_v5_gn_8_92540 Lactuca sativa HOM05D003718 ORTHO05D004402 5.2e-253 877.9 675 68.0
FAN24G2691 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.5e-252 876.3 706 67.6
Lalb_Chr21g0313961 Lupinus albus HOM05D003718 ORTHO05D004402 1.3e-251 873.2 694 67.7
Glyma.19G165800 Glycine max HOM05D003718 ORTHO05D004402 2.2e-251 872.5 689 67.5
Phvul.001G162000 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 6.4e-251 870.9 693 66.8
SGA_v2.0_scaffold138G35211 Striga asiatica HOM05D003718 ORTHO05D004402 6.4e-251 870.9 803 60.4
arahy.Tifrunner.gnm1.ann1.FU7SP6 Arachis hypogaea HOM05D003718 ORTHO05D004402 8.4e-251 870.5 705 66.0
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 2.4e-250 869.0 693 67.0
Eucgr.K03255 Eucalyptus grandis HOM05D003718 ORTHO05D004402 4.2e-250 868.2 691 67.0
arahy.Tifrunner.gnm1.ann1.QXN52H Arachis hypogaea HOM05D003718 ORTHO05D004402 9.2e-250 867.1 705 65.7
Aqoxy1G01842 Aquilegia oxysepala HOM05D003718 ORTHO05D004402 2.7e-249 865.5 690 65.7
Lalb_Chr02g0152551 Lupinus albus HOM05D003718 ORTHO05D004402 1.7e-248 862.8 685 67.6
FAN27G0576 Fragaria x ananassa HOM05D003718 ORTHO05D004402 6.6e-248 860.9 739 64.4
Lj5g0026512 Lotus japonicus HOM05D003718 ORTHO05D004402 1.1e-247 860.1 691 66.6
VMungo1383G2169 Vigna mungo HOM05D003718 ORTHO05D004402 4.3e-247 858.2 693 65.5
Nn3g19693 Nelumbo nucifera HOM05D003718 ORTHO05D004402 8.1e-246 854.0 694 65.4
Ca_09672_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 2.4e-245 852.4 690 66.1
AUR62013766 Chenopodium quinoa HOM05D003718 ORTHO05D004402 7.6e-244 847.4 685 65.3
Psat6g054080 Pisum sativum HOM05D003718 ORTHO05D004402 8.4e-243 844.0 687 65.4
Medtr1g069780 Medicago truncatula HOM05D003718 ORTHO05D004402 5.4e-242 841.3 682 65.2
Rhsim01G0262400 Rhododendron simsii HOM05D003718 ORTHO05D004402 1.3e-240 836.6 657 68.5
Phvul.007G191800 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 1.5e-239 833.2 668 66.0
THA.LOC104806254 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 2.8e-238 828.9 686 63.3
Glyma.10G038000 Glycine max HOM05D003718 ORTHO05D004402 8.1e-238 827.4 663 66.2
PGR031G0689 Punica granatum HOM05D003718 ORTHO05D004402 5.3e-237 824.7 676 64.2
THA.LOC104812416 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 8.4e-235 817.4 690 62.5
CARHR227730 Cardamine hirsuta HOM05D003718 ORTHO05D004402 1.1e-234 817.0 686 62.7
TPR.G5874 Trifolium pratense HOM05D003718 ORTHO05D004402 2.4e-234 815.8 646 66.1
Thhalv10024580m.g Eutrema salsugineum HOM05D003718 ORTHO05D004402 7.1e-234 814.3 686 62.5
PSO210G5136 Papaver somniferum HOM05D003718 ORTHO05D004402 2.1e-233 812.8 693 63.1
Rhsim13G0036100 Rhododendron simsii HOM05D003718 ORTHO05D004402 2.3e-232 809.3 613 70.3
ClCG03G002590 Citrullus lanatus HOM05D003718 ORTHO05D004402 3.0e-232 808.9 686 62.8
AL7G32970 Arabidopsis lyrata HOM05D003718 ORTHO05D004402 8.7e-232 807.4 686 61.8
arahy.Tifrunner.gnm1.ann1.EWE7BX Arachis hypogaea HOM05D003718 ORTHO05D004402 3.3e-231 805.4 725 60.0
VMungo0720G0687 Vigna mungo HOM05D003718 ORTHO05D004402 5.6e-231 804.7 668 63.6
Carub.0007s2028 Capsella rubella HOM05D003718 ORTHO05D004402 7.4e-231 804.3 688 61.6
Lsat_1_v5_gn_5_182920 Lactuca sativa HOM05D003718 ORTHO05D004402 7.4e-231 804.3 694 63.7
Sp7g19230 Schrenkiella parvula HOM05D003718 ORTHO05D004402 9.6e-231 803.9 686 62.7
PSO832G2930 Papaver somniferum HOM05D003718 ORTHO05D004402 1.3e-230 803.5 693 62.6
AT4G21150 Arabidopsis thaliana HOM05D003718 ORTHO05D004402 2.1e-230 802.7 686 61.7
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 2.4e-229 799.3 643 66.9
CDE07G1087 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 6.9e-229 797.7 691 60.9
arahy.Tifrunner.gnm1.ann1.B1YDGW Arachis hypogaea HOM05D003718 ORTHO05D004402 4.5e-228 795.0 708 60.3
Hund17111 Selenicereus undatus HOM05D003718 ORTHO05D004402 1.7e-227 793.1 643 63.5
BcaC09g51252 Brassica carinata HOM05D003718 ORTHO05D004402 3.5e-225 785.4 686 60.8
BolC1t01458H Brassica oleracea HOM05D003718 ORTHO05D004402 4.6e-225 785.0 686 60.8
EL10Ac1g00739 Beta vulgaris HOM05D003718 ORTHO05D004402 4.3e-223 778.5 714 59.2
CDE04G2599 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 4.3e-223 778.5 691 59.9
TPR.G9204 Trifolium pratense HOM05D003718 ORTHO05D004402 9.6e-223 777.3 712 60.7
Psat3g056400 Pisum sativum HOM05D003718 ORTHO05D004402 1.1e-221 773.9 686 61.7
Os01g0911200 Oryza sativa ssp. japonica HOM05D003718 ORTHO05D004402 1.8e-221 773.1 692 59.7
ATR0736G006 Amborella trichopoda HOM05D003718 ORTHO05D004402 3.1e-221 772.3 645 63.7
unitig_22.g5287 Utricularia gibba HOM05D003718 ORTHO05D004402 3.1e-221 772.3 708 59.5
COL.COLO4_04023 Corchorus olitorius HOM05D003718 ORTHO05D004402 1.4e-218 763.5 626 65.3
BcaNung03839 Brassica carinata HOM05D003718 ORTHO05D004402 3.2e-218 762.3 685 59.4
Zm00001eb143710 Zea mays HOM05D003718 ORTHO05D004402 1.0e-216 757.3 690 58.1
Zm00001eb365020 Zea mays HOM05D003718 ORTHO05D004402 1.8e-216 756.5 684 58.6
BraA03t14340Z Brassica rapa HOM05D003718 ORTHO05D004402 6.7e-216 754.6 703 58.7
Sc02g0003190 Simmondsia chinensis HOM05D003718 ORTHO05D004402 2.4e-213 746.1 615 64.4
AUR62023389 Chenopodium quinoa HOM05D003718 ORTHO05D004402 5.3e-213 745.0 685 60.0
BraA01t01195Z Brassica rapa HOM05D003718 ORTHO05D004402 2.2e-211 739.6 648 59.9
Ca_08683_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 1.1e-210 737.3 687 60.3
A01p12510 Brassica napus HOM05D003718 ORTHO05D004402 5.5e-210 734.9 648 59.3
C01p15100 Brassica napus HOM05D003718 ORTHO05D004402 1.2e-209 733.8 647 59.4
HPP92_000351 Vanilla planifolia HOM05D003718 ORTHO05D004402 5.7e-207 724.9 684 56.6
unitig_8.g3735 Utricularia gibba HOM05D003718 ORTHO05D004402 8.2e-206 721.1 653 59.3
Aa31LG6G3160 Aethionema arabicum HOM05D003718 ORTHO05D004402 2.4e-205 719.5 654 59.2
Nitab4.5_0005095g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 7.7e-204 714.5 502 76.7
A03p52670 Brassica napus HOM05D003718 ORTHO05D004402 4.2e-202 708.8 656 58.2
C07p51100 Brassica napus HOM05D003718 ORTHO05D004402 3.6e-201 705.7 663 57.8
BolC7t45610H Brassica oleracea HOM05D003718 ORTHO05D004402 3.6e-201 705.7 663 57.8
BolC3t20629H Brassica oleracea HOM05D003718 ORTHO05D004402 1.1e-191 674.1 727 53.0
C03p83480 Brassica napus HOM05D003718 ORTHO05D004402 4.8e-182 642.1 737 50.7
Cpa.g.sc20.44 Carica papaya HOM05D003718 ORTHO05D004402 4.7e-177 625.5 696 52.6
Ah.05g177770 Amaranthus hybridus HOM05D003718 ORTHO05D004402 2.0e-167 593.6 536 58.0
BcaC01g00710 Brassica carinata HOM05D003718 ORTHO05D004402 5.4e-165 585.5 550 58.4
Mapoly0028s0115 Marchantia polymorpha HOM05D003718 ORTHO05D004402 5.1e-147 525.8 694 45.7
Actinidia37517 Actinidia chinensis HOM05D003718 ORTHO05D004402 6.2e-145 518.8 563 54.2
CsaV3_UNG055470 Cucumis sativus L. HOM05D003718 ORTHO05D004402 1.4e-133 481.1 432 60.2
AUR62043414 Chenopodium quinoa HOM05D003718 ORTHO05D004402 1.3e-126 458.0 356 68.8
vmacro02673 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 1.1e-114 418.3 321 69.8
SEGI_27157 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 3.8e-110 403.3 361 57.9
HanXRQChr11g0336771 Helianthus annuus HOM05D003718 ORTHO05D004402 1.6e-105 387.9 379 58.8
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 2.7e-100 370.5 428 50.5
EL10Ac1g02094 Beta vulgaris HOM05D003718 ORTHO05D004402 2.2e-97 360.9 307 59.9
FAN20G1425 Fragaria x ananassa HOM05D003718 ORTHO05D004402 5.5e-93 346.3 321 61.4
Haze_21407 Corylus avellana HOM05D003718 ORTHO05D004402 2.2e-89 334.3 302 58.9
A08p15230 Brassica napus HOM05D003718 ORTHO05D001664 2.0e-87 327.8 607 38.2
AagrBONN_evm.TU.Sc2ySwM_340.234 Anthoceros agrestis HOM05D003718 ORTHO05D004402 7.9e-84 315.8 420 45.2
CBR_g32152 Chara braunii HOM05D003718 ORTHO05D004402 8.5e-70 269.2 634 34.1
Hma1.2p1_0576F.1_g181950 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 8.8e-67 259.2 309 51.1
Pp3c7_6480 Physcomitrium patens HOM05D003718 ORTHO05D004402 6.3e-65 253.1 384 43.8
Actinidia09538 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.4e-56 225.3 156 76.9
Psat7g093680 Pisum sativum HOM05D003718 ORTHO05D004402 1.6e-55 221.9 299 45.8
Actinidia09536 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.7e-55 221.1 263 52.1
HPP92_000418 Vanilla planifolia HOM05D003718 ORTHO05D004402 1.6e-47 195.3 645 27.6
FAN27G1677 Fragaria x ananassa HOM05D003718 ORTHO05D004402 4.6e-47 193.7 187 56.1
SEGI_31370 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 2.1e-44 184.9 223 51.1
arahy.Tifrunner.gnm1.ann1.S1G2KX Arachis hypogaea HOM05D003718 ORTHO05D004402 3.3e-37 161.0 118 66.9
SHI09762 Sapria himalayana HOM05D003718 ORTHO05D004402 8.1e-36 156.4 193 47.7
Actinidia09537 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.4e-35 155.6 162 54.9
CsaV3_UNG055460 Cucumis sativus L. HOM05D003718 ORTHO05D004402 1.4e-35 155.6 192 48.4
SMO367G0218 Selaginella moellendorffii HOM05D003718 ORTHO05D004402 1.3e-33 149.1 135 57.8
Actinidia25800 Actinidia chinensis HOM05D003718 ORTHO05D004402 6.0e-31 140.2 194 45.9
Psat6g086960 Pisum sativum HOM05D003718 ORTHO05D004402 9.5e-29 132.9 90 75.6
Actinidia30158 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.8e-28 131.3 88 70.5
arahy.Tifrunner.gnm1.ann1.6B4W14 Arachis hypogaea HOM05D003718 ORTHO05D004402 4.0e-27 127.5 79 79.7
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 8.9e-27 126.3 80 77.5
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 1.4e-24 119.0 140 49.3
Lsat_1_v5_gn_4_881 Lactuca sativa HOM05D003718 ORTHO05D004402 2.6e-18 98.2 162 38.9
Cre08.g368450 Chlamydomonas reinhardtii HOM05D003718 ORTHO05D004402 7.6e-18 96.7 299 29.4
Lsat_1_v5_gn_3_107020 Lactuca sativa HOM05D003718 ORTHO05D004402 2.2e-17 95.1 105 51.4
Psat6g087000 Pisum sativum HOM05D003718 ORTHO05D004402 1.1e-16 92.8 61 80.3
Actinidia30157 Actinidia chinensis HOM05D003718 ORTHO05D057597 2.7e-15 88.2 86 57.0
arahy.Tifrunner.gnm1.ann1.LM6F6Z Arachis hypogaea HOM05D003718 ORTHO05D004402 1.7e-14 85.5 115 40.9
Lsat_1_v5_gn_9_27880 Lactuca sativa HOM05D003718 ORTHO05D004402 5.1e-14 84.0 177 34.5
Gohir.A01G185580 Gossypium hirsutum HOM05D003718 ORTHO05D000087 5.8e-10 70.5 49 69.4
Actinidia25801 Actinidia chinensis HOM05D003718 ORTHO05D004402 9.9e-10 69.7 118 39.8


User provided reference genes

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